Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0017637

Physical Location & Seq

Genomic Coordinates Forward (+)

2498954 .. 2499530

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G032500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGGTTCATGGGAAGCAGCAGGCCTCAGGCACCAAGGTGGTCTTGGCAGCCATGGGAGGCTTGGCAATTGGAGGGTCGCTTGTGTTCTTGATGGGTTTCAGTTTCTTGGCCTCACTGACGCTTCTGGTTTTGAGCTCACCGCTTCTGTTGATCTTCAGCCCTTTGCTGTTTTTTGCTGGGTTTGTGTTTGTGGGAGCAGTGGTTGGGTTTGCTGTGGCTGGAGCCATGGCCCTCACAGGCATGTCTACTTTGGGGTGGATTTTTCAGGAGCTAGGAGGCACAAGTCTTTTGGGATTTGGTGGTGGTCTGGCCGAGAGATTGAAGGAACAAGGAAAAGATTGGGCTGGGTTCTTGCAGCATGGGAATGAGCAAGGCATCAAGATCGCTCGTAGAGGCCAGAACTTATTAGTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

140

Amino Acids

14.4

Weight (kDa)

9.4

Isoelectric Point (pI)

28.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41901
malus_domestica	MD03G1040200.v1.1
prunus_persica	Prupe.6G032500_v2.0.a1
pyrus_communis	pycom03g03090
rosa_chinensis	RchiOBHm_Chr5g0075111
rosa_laevigata	RLG00000036530
rosa_roxburghii	Rroxscaffold_1G00006510
rosa_samantha	Rh5AG493600 Rh5BG515100 Rh5CG538900 Rh5DG527600
rosa_wichuraiana	Rw5G045790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	248
AciI	CCGC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	325
AleI	CACNNNNGTG	1 cut(s)	38
AluBI	AGCT	2 cut(s)	138, 274
AluI	AGCT	2 cut(s)	138, 274
Alw21I	GWGCWC	1 cut(s)	140
AoxI	GGCC	5 cut(s)	24, 111, 231, 312, 397
ApeKI	GCWGC	3 cut(s)	19, 50, 358
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	132
AxyI	CCTNAGG	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	31, 62, 370
BccI	CCATC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	3 cut(s)	20, 51, 359
BlsI	GCNGC	3 cut(s)	21, 52, 360
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	34, 226
BmsI	GCATC	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	36, 54, 228
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bse21I	CCTNAGG	1 cut(s)	28
BseDI	CCNNGG	3 cut(s)	36, 54, 228
BseMII	CTCAG	1 cut(s)	42
BseXI	GCAGC	3 cut(s)	31, 62, 370
BseYI	CCCAGC	2 cut(s)	179, 347
BshFI	GGCC	5 cut(s)	26, 113, 233, 314, 399
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	140
BsnI	GGCC	5 cut(s)	26, 113, 233, 314, 399
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	153, 384
Bsp19I	CCATGG	2 cut(s)	54, 228
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	5 cut(s)	26, 113, 233, 314, 399
BspCNI	CTCAG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	34, 226
BspT107I	GGYRCC	1 cut(s)	32
BssECI	CCNNGG	3 cut(s)	36, 54, 228
BssMI	GATC	2 cut(s)	153, 384
BssT1I	CCWWGG	3 cut(s)	36, 54, 228
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	28
BstDSI	CCRYGG	2 cut(s)	54, 228
BstKTI	GATC	2 cut(s)	156, 387
BstMBI	GATC	2 cut(s)	153, 384
BstNSI	RCATGY	1 cut(s)	247
BstV1I	GCAGC	3 cut(s)	31, 62, 370
Bsu36I	CCTNAGG	1 cut(s)	28
BsuRI	GGCC	5 cut(s)	26, 113, 233, 314, 399
BtgI	CCRYGG	2 cut(s)	54, 228
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	116, 207
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	130
CviAII	CATG	5 cut(s)	11, 55, 229, 244, 362
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	2 cut(s)	155, 386
DpnII	GATC	2 cut(s)	153, 384
EaeI	YGGCCR	1 cut(s)	312
Ecl136II	GAGCTC	1 cut(s)	138
Eco130I	CCWWGG	3 cut(s)	36, 54, 228
Eco147I	AGGCCT	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	142
Eco81I	CCTNAGG	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	138
EcoT14I	CCWWGG	3 cut(s)	36, 54, 228
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	3 cut(s)	36, 54, 228
FaeI	CATG	5 cut(s)	14, 58, 232, 247, 365
FaiI	YATR	5 cut(s)	12, 56, 230, 245, 363
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	5 cut(s)	10, 54, 228, 243, 361
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	20, 51, 359
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	3 cut(s)	20, 51, 359
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	3 cut(s)	20, 51, 359
GsaI	CCCAGC	2 cut(s)	183, 351
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	5 cut(s)	26, 113, 233, 314, 399
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	5 cut(s)	14, 58, 232, 247, 365
HphI	GGTGA	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188III	TCNNGA	3 cut(s)	91, 269, 382
Hpy8I	GTNNAC	1 cut(s)	249
HpyAV	CCTTC	1 cut(s)	319
HpyCH4V	TGCA	1 cut(s)	358
HpyF3I	CTNAG	1 cut(s)	28
Hsp92II	CATG	5 cut(s)	14, 58, 232, 247, 365
Kzo9I	GATC	2 cut(s)	153, 384
LmnI	GCTCC	3 cut(s)	197, 224, 271
Lsp1109I	GCAGC	3 cut(s)	31, 62, 370
LweI	GCATC	1 cut(s)	387
MaeI	CTAG	1 cut(s)	275
MalI	GATC	2 cut(s)	155, 386
MboI	GATC	2 cut(s)	153, 384
MboII	GAAGA	1 cut(s)	148
MfeI	CAATTG	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	1 cut(s)	69
MnlI	CCTC	7 cut(s)	37, 53, 68, 124, 245, 272, 389
MslI	CAYNNNNRTG	3 cut(s)	38, 242, 366
MunI	CAATTG	1 cut(s)	69
NcoI	CCATGG	2 cut(s)	54, 228
NdeII	GATC	2 cut(s)	153, 384
NlaIII	CATG	5 cut(s)	14, 58, 232, 247, 365
NlaIV	GGNNCC	2 cut(s)	34, 226
NmeAIII	GCCGAG	1 cut(s)	340
NspI	RCATGY	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	21, 52, 360
Psp124BI	GAGCTC	1 cut(s)	140
PspFI	CCCAGC	2 cut(s)	179, 347
PspN4I	GGNNCC	2 cut(s)	34, 226
PspPI	GGNCC	1 cut(s)	232
RseI	CAYNNNNRTG	3 cut(s)	38, 242, 366
SacI	GAGCTC	1 cut(s)	140
SatI	GCNGC	3 cut(s)	20, 51, 359
Sau3AI	GATC	2 cut(s)	153, 384
Sau96I	GGNCC	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	4 cut(s)	9, 42, 140, 276
SfaNI	GCATC	1 cut(s)	387
SmiMI	CAYNNNNRTG	3 cut(s)	38, 242, 366
Sse9I	AATT	1 cut(s)	69
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	26
StyI	CCWWGG	3 cut(s)	36, 54, 228
TasI	AATT	1 cut(s)	69
TscAI	CASTG	2 cut(s)	123, 207
TseI	GCWGC	3 cut(s)	19, 50, 358
TspRI	CASTG	2 cut(s)	123, 207
XceI	RCATGY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	2 cut(s)	43, 61
XmiI	GTMKAC	1 cut(s)	248
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.