RLG00000036530

Oleosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017637
Physical Location & Seq
Reverse (-)
81602735 .. 81603462
728 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036530

Sequence Viewer

Length: 357 bp
ATGGAGGGTCGTCATCAACAACAGGGTCTTGGTCAGGCTCGGGGTCAGGGCAGGCATCAACAGCAGGCATCTGGCACCATGGTGATTGTGGCATCCGTCATAGGCTTAGCCATTGGGGGGTCGCTTCTTGGCTTGATGGGGCTCAGCTTCTTGGCATCATTGGCACTACTACTTTTCAGCTCGCCGCTCTTGTTGATCTTCAGTCCTCTCCTGTTTTTCGCCAGTTTGGTGTTTGTGGGATCACTTGTCGGGTTTGCTGCGGCTGCAACCATGGCTCTCACCGGAGTGTCGGCTCTCGGGTGGATTTTTCAGGAGGAAGCGACTGGATCATACAATTCCACACAAACTCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

119

Amino Acids

12.23

Weight (kDa)

6.25

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 29 - 105 2.4e-10 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g41901
malus_domestica MD03G1040200.v1.1
prunus_persica Prupe.6G032500_v2.0.a1
pyrus_communis pycom03g03090
rosa_chinensis RchiOBHm_Chr5g0075111
rosa_laevigata RLG00000036530
rosa_roxburghii Rroxscaffold_1G00006510
rosa_samantha Rh5AG493600 Rh5BG515100 Rh5CG538900 Rh5DG527600
rosa_wichuraiana Rw5G045790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 187
AciI CCGC 2 cut(s) 185, 260
AclWI GGATC 2 cut(s) 247, 334
AcuI CTGAAG 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 117
AleI CACNNNNGTG 2 cut(s) 80, 284
AluBI AGCT 2 cut(s) 147, 180
AluI AGCT 2 cut(s) 147, 180
AlwI GGATC 2 cut(s) 247, 334
Ama87I CYCGRG 2 cut(s) 39, 296
ApeKI GCWGC 2 cut(s) 257, 263
AsuHPI GGTGA 2 cut(s) 94, 271
AvaI CYCGRG 2 cut(s) 39, 296
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 244, 250
BccI CCATC 1 cut(s) 130
BisI GCNGC 4 cut(s) 185, 258, 261, 264
BlpI GCTNAGC 2 cut(s) 106, 143
BlsI GCNGC 4 cut(s) 186, 259, 262, 265
BmeT110I CYCGRG 2 cut(s) 39, 296
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 4 cut(s) 64, 77, 101, 164
Bpu1102I GCTNAGC 2 cut(s) 106, 143
BsaJI CCNNGG 2 cut(s) 78, 270
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 2 cut(s) 222, 328
BseDI CCNNGG 2 cut(s) 78, 270
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 157
BseNI ACTGG 2 cut(s) 222, 328
BseXI GCAGC 2 cut(s) 244, 250
BshNI GGYRCC 1 cut(s) 74
BsiHKCI CYCGRG 2 cut(s) 39, 296
BsiSI CCGG 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 117
BsoBI CYCGRG 2 cut(s) 39, 296
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 3 cut(s) 195, 239, 326
Bsp1720I GCTNAGC 2 cut(s) 106, 143
Bsp19I CCATGG 2 cut(s) 78, 270
BspACI CCGC 2 cut(s) 185, 260
BspCNI CTCAG 1 cut(s) 156
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 2 cut(s) 247, 334
BspT107I GGYRCC 1 cut(s) 74
BsrBI CCGCTC 1 cut(s) 187
BsrI ACTGG 2 cut(s) 222, 328
BssECI CCNNGG 2 cut(s) 78, 270
BssMI GATC 3 cut(s) 195, 239, 326
BssT1I CCWWGG 2 cut(s) 78, 270
BstC8I GCNNGC 3 cut(s) 53, 66, 182
BstDEI CTNAG 2 cut(s) 106, 143
BstDSI CCRYGG 2 cut(s) 78, 270
BstF5I GGATG 1 cut(s) 92
BstKTI GATC 3 cut(s) 198, 242, 329
BstMBI GATC 3 cut(s) 195, 239, 326
BstMWI GCNNNNNNNGC 4 cut(s) 61, 161, 263, 272
BstV1I GCAGC 2 cut(s) 244, 250
BtgI CCRYGG 2 cut(s) 78, 270
BtsCI GGATG 1 cut(s) 92
Cac8I GCNNGC 3 cut(s) 53, 66, 182
CciI TCATGA 1 cut(s) 349
CviAII CATG 3 cut(s) 79, 271, 350
DdeI CTNAG 2 cut(s) 106, 143
DpnI GATC 3 cut(s) 197, 241, 328
DpnII GATC 3 cut(s) 195, 239, 326
Eco130I CCWWGG 2 cut(s) 78, 270
Eco24I GRGCYC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 184
Eco88I CYCGRG 2 cut(s) 39, 296
EcoT14I CCWWGG 2 cut(s) 78, 270
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 2 cut(s) 78, 270
FaeI CATG 3 cut(s) 82, 274, 353
FaiI YATR 5 cut(s) 80, 101, 272, 331, 351
FatI CATG 3 cut(s) 78, 270, 349
Fnu4HI GCNGC 4 cut(s) 185, 258, 261, 264
FokI GGATG 1 cut(s) 79
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 4 cut(s) 185, 258, 261, 264
GluI GCNGC 4 cut(s) 185, 258, 261, 264
HapII CCGG 1 cut(s) 282
Hin1II CATG 3 cut(s) 82, 274, 353
HpaII CCGG 1 cut(s) 282
HphI GGTGA 2 cut(s) 94, 271
Hpy188III TCNNGA 2 cut(s) 311, 350
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 161, 263, 272
HpyF3I CTNAG 2 cut(s) 106, 143
Hsp92II CATG 3 cut(s) 82, 274, 353
Kzo9I GATC 3 cut(s) 195, 239, 326
Lsp1109I GCAGC 2 cut(s) 244, 250
LweI GCATC 4 cut(s) 64, 77, 101, 164
MalI GATC 3 cut(s) 197, 241, 328
MbiI CCGCTC 1 cut(s) 187
MboI GATC 3 cut(s) 195, 239, 326
MboII GAAGA 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 1 cut(s) 334
MnlI CCTC 2 cut(s) 216, 307
MslI CAYNNNNRTG 2 cut(s) 80, 284
MspI CCGG 1 cut(s) 282
MwoI GCNNNNNNNGC 4 cut(s) 61, 161, 263, 272
NcoI CCATGG 2 cut(s) 78, 270
NdeII GATC 3 cut(s) 195, 239, 326
NlaIII CATG 3 cut(s) 82, 274, 353
NlaIV GGNNCC 1 cut(s) 76
OliI CACNNNNGTG 2 cut(s) 80, 284
PagI TCATGA 1 cut(s) 349
PkrI GCNGC 4 cut(s) 186, 259, 262, 265
PspN4I GGNNCC 1 cut(s) 76
RseI CAYNNNNRTG 2 cut(s) 80, 284
SatI GCNGC 4 cut(s) 185, 258, 261, 264
Sau3AI GATC 3 cut(s) 195, 239, 326
SduI GDGCHC 1 cut(s) 144
SetI ASST 2 cut(s) 149, 182
SfaNI GCATC 4 cut(s) 64, 77, 101, 164
SmiMI CAYNNNNRTG 2 cut(s) 80, 284
Sse9I AATT 1 cut(s) 334
SsiI CCGC 2 cut(s) 185, 260
StyI CCWWGG 2 cut(s) 78, 270
TasI AATT 1 cut(s) 334
TauI GCSGC 2 cut(s) 187, 263
TseI GCWGC 2 cut(s) 257, 263
TspGWI ACGGA 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.