Rh5DG527600

Oleosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017637
Physical Location & Seq
Reverse (-)
81495065 .. 81495490
426 bp
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UTR
Exon/CDS
Intron
Rh5DG527600.1

Sequence Viewer

Length: 426 bp
ATGGAGGGTCGTCATCAACAACAGGGTCTTGGTCAGGCTCGGGGTCAGGGTAGGCATCAACAGCAGGCATATGGCACCATGGTGATTGTGGCATCCGTCATAGGCTTAGCCATTGGGGGGTCGCTTCTTGGCTTGATGGGGCTCAGCTTCTTGGCATCATTGACACTACTACTTTTCAGCTCGCCGCTCTTGTTGATCTTCAGTCCTCTCCTGTTTTTCGCCAGTTTGGTGTTTGTGGGATCACTTGTCGGGTTTGCTGCGGCCGCAACCATGGCTCTCACCGGCGTGTCGGCTCTCGGGTGGATTTTTCAGGAGGTTGGAGGCCAAAGGCTTCTGGGTTTTGGCGGTGGCGTTATGGCGGGTAGAGTTAAGGAACAAAGCAAGGATTGGGGTAGATATTTGCAGCAGGGCGGGATGGGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

141

Amino Acids

14.7

Weight (kDa)

10.4

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 29 - 110 4.9e-12 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g41901
malus_domestica MD03G1040200.v1.1
prunus_persica Prupe.6G032500_v2.0.a1
pyrus_communis pycom03g03090
rosa_chinensis RchiOBHm_Chr5g0075111
rosa_laevigata RLG00000036530
rosa_roxburghii Rroxscaffold_1G00006510
rosa_samantha Rh5AG493600 Rh5BG515100 Rh5CG538900 Rh5DG527600
rosa_wichuraiana Rw5G045790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 187
AciI CCGC 6 cut(s) 185, 260, 264, 345, 359, 411
AclWI GGATC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 117
AleI CACNNNNGTG 2 cut(s) 80, 284
AluBI AGCT 2 cut(s) 147, 180
AluI AGCT 2 cut(s) 147, 180
AlwI GGATC 1 cut(s) 247
Ama87I CYCGRG 2 cut(s) 39, 296
AoxI GGCC 2 cut(s) 261, 322
ApeKI GCWGC 2 cut(s) 257, 403
AsuHPI GGTGA 2 cut(s) 94, 271
AvaI CYCGRG 2 cut(s) 39, 296
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 244, 415
BccI CCATC 2 cut(s) 130, 409
BisI GCNGC 5 cut(s) 185, 258, 261, 264, 404
BlpI GCTNAGC 2 cut(s) 106, 143
BlsI GCNGC 5 cut(s) 186, 259, 262, 265, 405
BmeT110I CYCGRG 2 cut(s) 39, 296
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 3 cut(s) 64, 101, 164
Bpu1102I GCTNAGC 2 cut(s) 106, 143
BsaJI CCNNGG 2 cut(s) 78, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 78, 270
BseGI GGATG 2 cut(s) 92, 420
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 157
BseNI ACTGG 1 cut(s) 222
BseX3I CGGCCG 1 cut(s) 261
BseXI GCAGC 2 cut(s) 244, 415
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 2 cut(s) 263, 324
BshNI GGYRCC 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 264
BsiHKCI CYCGRG 2 cut(s) 39, 296
BsiSI CCGG 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 117
BsnI GGCC 2 cut(s) 263, 324
BsoBI CYCGRG 2 cut(s) 39, 296
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 2 cut(s) 195, 239
Bsp1720I GCTNAGC 2 cut(s) 106, 143
Bsp19I CCATGG 2 cut(s) 78, 270
BspACI CCGC 6 cut(s) 185, 260, 264, 345, 359, 411
BspANI GGCC 2 cut(s) 263, 324
BspCNI CTCAG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 74
BsrBI CCGCTC 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 1 cut(s) 222
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 78, 270
BssMI GATC 2 cut(s) 195, 239
BssT1I CCWWGG 2 cut(s) 78, 270
BstC8I GCNNGC 2 cut(s) 66, 182
BstDEI CTNAG 2 cut(s) 106, 143
BstDSI CCRYGG 2 cut(s) 78, 270
BstF5I GGATG 2 cut(s) 92, 420
BstKTI GATC 2 cut(s) 198, 242
BstMBI GATC 2 cut(s) 195, 239
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 3 cut(s) 61, 263, 272
BstV1I GCAGC 2 cut(s) 244, 415
BstZI CGGCCG 1 cut(s) 261
BsuRI GGCC 2 cut(s) 263, 324
BtgI CCRYGG 2 cut(s) 78, 270
BtsCI GGATG 2 cut(s) 92, 420
Cac8I GCNNGC 2 cut(s) 66, 182
CciNI GCGGCCGC 1 cut(s) 261
Cfr10I RCCGGY 1 cut(s) 281
CviAII CATG 2 cut(s) 79, 271
DdeI CTNAG 2 cut(s) 106, 143
DpnI GATC 2 cut(s) 197, 241
DpnII GATC 2 cut(s) 195, 239
EaeI YGGCCR 1 cut(s) 261
EagI CGGCCG 1 cut(s) 261
EclXI CGGCCG 1 cut(s) 261
Eco130I CCWWGG 2 cut(s) 78, 270
Eco24I GRGCYC 1 cut(s) 144
Eco52I CGGCCG 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 184
Eco88I CYCGRG 2 cut(s) 39, 296
EcoT14I CCWWGG 2 cut(s) 78, 270
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 2 cut(s) 78, 270
FaeI CATG 2 cut(s) 82, 274
FaiI YATR 7 cut(s) 70, 72, 80, 101, 272, 356, 424
FatI CATG 2 cut(s) 78, 270
FauI CCCGC 2 cut(s) 352, 404
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 5 cut(s) 185, 258, 261, 264, 404
FokI GGATG 1 cut(s) 79
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 5 cut(s) 185, 258, 261, 264, 404
GluI GCNGC 5 cut(s) 185, 258, 261, 264, 404
HaeIII GGCC 2 cut(s) 263, 324
HapII CCGG 1 cut(s) 282
Hin1II CATG 2 cut(s) 82, 274
HpaII CCGG 1 cut(s) 282
HphI GGTGA 2 cut(s) 94, 271
Hpy188III TCNNGA 1 cut(s) 311
HpyCH4V TGCA 1 cut(s) 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 263, 272
HpyF3I CTNAG 2 cut(s) 106, 143
Hsp92II CATG 2 cut(s) 82, 274
Kzo9I GATC 2 cut(s) 195, 239
Lsp1109I GCAGC 2 cut(s) 244, 415
LweI GCATC 3 cut(s) 64, 101, 164
MalI GATC 2 cut(s) 197, 241
MbiI CCGCTC 1 cut(s) 187
MboI GATC 2 cut(s) 195, 239
MboII GAAGA 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 3 cut(s) 216, 307, 314
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 2 cut(s) 80, 284
MspI CCGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 61, 263, 272
NcoI CCATGG 2 cut(s) 78, 270
NdeI CATATG 1 cut(s) 70
NdeII GATC 2 cut(s) 195, 239
NlaIII CATG 2 cut(s) 82, 274
NlaIV GGNNCC 1 cut(s) 76
NotI GCGGCCGC 1 cut(s) 261
OliI CACNNNNGTG 2 cut(s) 80, 284
PkrI GCNGC 5 cut(s) 186, 259, 262, 265, 405
PspN4I GGNNCC 1 cut(s) 76
RseI CAYNNNNRTG 2 cut(s) 80, 284
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 5 cut(s) 185, 258, 261, 264, 404
Sau3AI GATC 2 cut(s) 195, 239
SduI GDGCHC 1 cut(s) 144
SetI ASST 3 cut(s) 149, 182, 318
SfaNI GCATC 3 cut(s) 64, 101, 164
SgrAI CRCCGGYG 1 cut(s) 281
SmiMI CAYNNNNRTG 2 cut(s) 80, 284
SsiI CCGC 6 cut(s) 185, 260, 264, 345, 359, 411
StyI CCWWGG 2 cut(s) 78, 270
TauI GCSGC 3 cut(s) 187, 263, 266
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TseI GCWGC 2 cut(s) 257, 403
TspGWI ACGGA 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.