pycom03g03090

Oleosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0017637
Physical Location & Seq
Forward (+)
2447791 .. 2448219
429 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g03090.1

Sequence Viewer

Length: 429 bp
ATGGAGATTCAGCATGGACAGCAGCAGCAGCAGCTGCAGACGTCAGGCACAAAAGTGTTTTTGGCTGCTTTCACTGGCTTAGCAATCGGAGGGCCGCTTGTGGGGTTGATGGGGTTCAGCTTCTTGGCCTCGGTGACGCTGCTGGTTTTGAGCTCGCCGCTTCTGCTTATTTTCAGCCCACTTCTGTTTTTTGCTGGGTTTGTGTTTGTCGGAGCCTTGGCTGGGTTTGCTGTGGCTGCTGCCCTGGCTTTTACAGGGATGACTACTCTAGGGTGGATTTTTCAGGAGCTTGCAGGTATAAGGCTTTTGGGATTTGGCGGCGGAGACGGTGGTGGTATGGTAGAGAGATTGAAGGATAAAGGAAAAGATTGGACTAGGTTTTTGCAGCATGGGACTGAACAAGATGGCAGGATTAGTAGTAGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

143

Amino Acids

14.95

Weight (kDa)

8.23

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 21 - 99 1.7e-09 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g41901
malus_domestica MD03G1040200.v1.1
prunus_persica Prupe.6G032500_v2.0.a1
pyrus_communis pycom03g03090
rosa_chinensis RchiOBHm_Chr5g0075111
rosa_laevigata RLG00000036530
rosa_roxburghii Rroxscaffold_1G00006510
rosa_samantha Rh5AG493600 Rh5BG515100 Rh5CG538900 Rh5DG527600
rosa_wichuraiana Rw5G045790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 284
AciI CCGC 4 cut(s) 95, 158, 318, 321
AcyI GRCGYC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 101, 222
AgsI TTSAA 1 cut(s) 352
AjnI CCWGG 1 cut(s) 243
AleI CACNNNNGTG 1 cut(s) 53
AluBI AGCT 4 cut(s) 34, 120, 153, 289
AluI AGCT 4 cut(s) 34, 120, 153, 289
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 318
AlwNI CAGNNNCTG 1 cut(s) 34
AoxI GGCC 2 cut(s) 92, 126
ArsI GACNNNNNNTTYG 2 cut(s) 364, 396
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 145
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 155
BccI CCATC 2 cut(s) 103, 398
BciT130I CCWGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 2 cut(s) 269, 375
BfmI CTRYAG 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 284
BlpI GCTNAGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 245
Bpu1102I GCTNAGC 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 129, 216, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 222
Bse1I ACTGG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 3 cut(s) 129, 216, 243
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 101, 222
BseNI ACTGG 1 cut(s) 79
BseYI CCCAGC 2 cut(s) 194, 221
BshFI GGCC 2 cut(s) 94, 128
BsiHKAI GWGCWC 1 cut(s) 155
BslFI GGGAC 1 cut(s) 406
BslI CCNNNNNNNGG 2 cut(s) 101, 222
BsmAI GTCTC 1 cut(s) 318
BsmBI CGTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 406
BsnI GGCC 2 cut(s) 94, 128
Bsp1286I GDGCHC 1 cut(s) 155
Bsp1720I GCTNAGC 1 cut(s) 79
BspACI CCGC 4 cut(s) 95, 158, 318, 321
BspANI GGCC 2 cut(s) 94, 128
BspLI GGNNCC 1 cut(s) 214
BspMAI CTGCAG 1 cut(s) 39
BspMI ACCTGC 1 cut(s) 284
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 3 cut(s) 129, 216, 243
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 34
BstC8I GCNNGC 2 cut(s) 155, 291
BstDEI CTNAG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 264
BstMAI GTCTC 1 cut(s) 318
BstMWI GCNNNNNNNGC 8 cut(s) 19, 28, 31, 34, 163, 227, 236, 245
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 35
BsuRI GGCC 2 cut(s) 94, 128
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 72
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 2 cut(s) 155, 291
CaiI CAGNNNCTG 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 92
CseI GACGC 1 cut(s) 145
CviAII CATG 2 cut(s) 14, 389
DdeI CTNAG 1 cut(s) 79
EciI GGCGGA 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 318
FaeI CATG 2 cut(s) 17, 392
FaiI YATR 4 cut(s) 15, 299, 338, 390
FaqI GGGAC 1 cut(s) 406
FatI CATG 2 cut(s) 13, 388
FokI GGATG 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 155
FspBI CTAG 2 cut(s) 269, 375
GsaI CCCAGC 2 cut(s) 198, 225
HaeIII GGCC 2 cut(s) 94, 128
HgaI GACGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 17, 392
HinfI GANTC 1 cut(s) 7
HphI GGTGA 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 89, 212
Hpy188III TCNNGA 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 37, 293, 385
HpyF10VI GCNNNNNNNGC 8 cut(s) 19, 28, 31, 34, 163, 227, 236, 245
HpyF3I CTNAG 1 cut(s) 79
HpySE526I ACGT 1 cut(s) 41
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 17, 392
LmnI GCTCC 2 cut(s) 212, 286
MaeI CTAG 2 cut(s) 269, 375
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 3 cut(s) 83, 139, 416
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 8 cut(s) 19, 28, 31, 34, 163, 227, 236, 245
NlaIII CATG 2 cut(s) 17, 392
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 133
OliI CACNNNNGTG 1 cut(s) 53
PfeI GAWTC 1 cut(s) 7
Psp124BI GAGCTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 243
PspFI CCCAGC 2 cut(s) 194, 221
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 92
PstI CTGCAG 1 cut(s) 39
PstNI CAGNNNCTG 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 53
SacI GAGCTC 1 cut(s) 155
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 155
SetI ASST 7 cut(s) 36, 44, 122, 155, 291, 298, 380
SfcI CTRYAG 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 53
SsiI CCGC 4 cut(s) 95, 158, 318, 321
SspMI CTAG 2 cut(s) 269, 375
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 329
TaiI ACGT 1 cut(s) 44
TauI GCSGC 3 cut(s) 97, 160, 321
TfiI GAWTC 1 cut(s) 7
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspRI CASTG 1 cut(s) 79
XspI CTAG 2 cut(s) 269, 375
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.