FvH4_3g43030

Outer envelope protein 80

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
35948364 .. 35954715
6352 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43030.t2

Sequence Viewer

Length: 1335 bp
ATGGATCGGGGACTTTTTGCCATGGTTTCAGCTGTTGAGGTTCTATCAGGAGGTATTCTTAAGTTACAAGTTTCAGAAACTGAAGTCAATAACATCGCCATAAGATTCCTTGACAGGAAGACGGGTGAGCCTACTATAGGGAAGACAAAGCCAGAAACGATACTTCGCCAACTCACAACTAAAAAAGGACAGGTCTACAGTATGCTTCAAGGAAAGAGAGATGTGGAAACAGTATTGACTATGGGGCTTATGGAAGATGTTAGCATTATCCCCCAACCAGCAGAAAGTGGTAAGGTTGATATTGTAATGAACGTTGTTGAGCGGCCAAGTGGAGGTTTTTCTGCTGGTGGTGGTATATCAAGTGGAATAACAAGCGGCCCTTTGTCAGGACTCATTGGAAGCTTTGCCTATTCTCATAGGAATCTCTTTGGAAGAAACCAAAAGCTGCACGTTTCTTTAGAGAGGGGCCAGATAGACTCTTTATTTCGTATAAACTACTCAGACCCATGGATTTCAGGGGACGATATGAGGACGTCCCGGACAATAATGGTTCAGAATTCAAGGACCCCTGGCACACTTATCCATGGTAACCAACTTGATGGTAGCAACTTGACCATTGGTCGCATCTCAGCTGGTATTGATTTCAGCCGACCAATTAGGCCAAAATGGAGTGGCACGGCTGGGCTTACGTATCAGCATGCTGGTGCTCGTGATGAAGAAGGAAGTCCTATTATCAAGGATTTCTTTAGCAGTCCCCTAACTGCAAGTGGTAATAGCTATGATGAGATGCTGCTGGCAAAACTTGAGACTGTCTACACAGGTTCTGGTGACCGTGGGTCTTCAATGTTGAAATTCAACATGGAACAAGGACTTCCGGTTTTGCCTGATTGGTTGTTTTTCAACAGAACGAACGCTCGTGCCAGGAAAGATCTAGAAATCGGCCTTGCTCACCTTCTTTTTAGCGTATCTGGTGGCCATGTGATTGGTAACTTCCCACCACATGAAGCATTTGTCATTGGAGGAACAAATAGCGTAAGAGGTTATGAAGAAGGTGCTGTGGGTTCTGGTAGATCTTATGCAGTTGGCTCTGGAGAAATTTCTTTTCCCCTGGTGGGGCCAGTTGGGGGAGTTATTTTTGCTGACTATGGCACGGATCTTGGATCAGGTCCAACTGTTCCTGGTGATCCTGCCGGAGCTAGGCTTAAGCCTGGAAGCGGGTATGGCTATGGGTTGGGAATCAGATTGGACTCGCCTTTGGGACCACTTCGTCTTGAATATGCATTTAACGACAAGGGTACACCGAGATTTCACTTTGGGGTCGGCCACCGGAACTAG

Protein Analysis

445

Amino Acids

47.47

Weight (kDa)

7.91

Isoelectric Point (pI)

25.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Omp85 PF01103 376 - 678 4e-62 Omp85 superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1266
AatII GACGTC 1 cut(s) 536
AccBSI CCGCTC 1 cut(s) 322
AccI GTMKAC 2 cut(s) 195, 813
AciI CCGC 3 cut(s) 322, 375, 1215
AclI AACGTT 1 cut(s) 312
AclWI GGATC 4 cut(s) 12, 1161, 1168, 1178
AcoI YGGCCR 3 cut(s) 323, 973, 1321
AcsI RAATTY 3 cut(s) 556, 851, 1095
AcuI CTGAAG 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 533
AfaI GTAC 1 cut(s) 1297
AfiI CCNNNNNNNGG 8 cut(s) 137, 332, 386, 1112, 1113, 1124, 1197, 1214
AflII CTTAAG 2 cut(s) 59, 1202
AgsI TTSAA 7 cut(s) 209, 561, 843, 850, 856, 901, 1274
AhdI GACNNNNNGTC 2 cut(s) 618, 835
AjnI CCWGG 5 cut(s) 568, 920, 1107, 1177, 1207
AluBI AGCT 6 cut(s) 32, 402, 445, 632, 777, 1196
AluI AGCT 6 cut(s) 32, 402, 445, 632, 777, 1196
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 1 cut(s) 800
AlwI GGATC 4 cut(s) 12, 1161, 1168, 1178
AlwNI CAGNNNCTG 2 cut(s) 80, 824
AoxI GGCC 8 cut(s) 323, 376, 466, 659, 940, 973, 1115, 1321
ApeKI GCWGC 2 cut(s) 445, 790
ApoI RAATTY 3 cut(s) 556, 851, 1095
AspS9I GGNCC 6 cut(s) 377, 466, 564, 1115, 1166, 1259
AsuC2I CCSGG 1 cut(s) 538
AsuHPI GGTGA 4 cut(s) 137, 839, 941, 1193
AvaII GGWCC 3 cut(s) 564, 1166, 1259
BalI TGGCCA 1 cut(s) 975
BauI CACGAG 2 cut(s) 708, 915
BbsI GAAGAC 3 cut(s) 125, 149, 831
Bbv12I GWGCWC 1 cut(s) 709
BbvI GCAGC 2 cut(s) 432, 777
BccI CCATC 1 cut(s) 593
BceAI ACGGC 1 cut(s) 693
BciT130I CCWGG 5 cut(s) 570, 922, 1109, 1179, 1209
BcnI CCSGG 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 800
BfaI CTAG 3 cut(s) 932, 1197, 1333
BfmI CTRYAG 2 cut(s) 135, 196
BfrI CTTAAG 2 cut(s) 59, 1202
BglII AGATCT 2 cut(s) 928, 1070
BisI GCNGC 4 cut(s) 323, 376, 446, 791
BlsI GCNGC 4 cut(s) 324, 377, 447, 792
Bme1390I CCNGG 6 cut(s) 538, 570, 922, 1109, 1179, 1209
Bme18I GGWCC 3 cut(s) 564, 1166, 1259
BmeRI GACNNNNNGTC 2 cut(s) 618, 835
BmgT120I GGNCC 6 cut(s) 377, 466, 564, 1115, 1166, 1259
BmiI GGNNCC 4 cut(s) 467, 566, 1116, 1260
BmrFI CCNGG 6 cut(s) 538, 570, 922, 1109, 1179, 1209
BmsI GCATC 2 cut(s) 633, 777
BpiI GAAGAC 3 cut(s) 125, 149, 831
BpmI CTGGAG 1 cut(s) 1110
BpuEI CTTGAG 1 cut(s) 824
BpuMI CCSGG 1 cut(s) 538
BsaAI YACGTR 1 cut(s) 690
BsaHI GRCGYC 1 cut(s) 533
BsaJI CCNNGG 6 cut(s) 21, 506, 568, 583, 832, 1107
BsaWI WCCGGW 2 cut(s) 874, 1326
Bsc4I CCNNNNNNNGG 8 cut(s) 137, 332, 386, 1112, 1113, 1124, 1197, 1214
Bse1I ACTGG 1 cut(s) 1118
BseBI CCWGG 5 cut(s) 570, 922, 1109, 1179, 1209
BseDI CCNNGG 6 cut(s) 21, 506, 568, 583, 832, 1107
BseLI CCNNNNNNNGG 8 cut(s) 137, 332, 386, 1112, 1113, 1124, 1197, 1214
BseMII CTCAG 2 cut(s) 513, 642
BseNI ACTGG 1 cut(s) 1118
BseXI GCAGC 2 cut(s) 432, 777
BseYI CCCAGC 1 cut(s) 680
BsgI GTGCAG 1 cut(s) 431
BshFI GGCC 8 cut(s) 325, 378, 468, 661, 942, 975, 1117, 1323
BsiHKAI GWGCWC 1 cut(s) 709
BsiSI CCGG 4 cut(s) 538, 875, 1191, 1327
BslFI GGGAC 5 cut(s) 24, 520, 533, 738, 1272
BslI CCNNNNNNNGG 8 cut(s) 137, 332, 386, 1112, 1113, 1124, 1197, 1214
BsmAI GTCTC 1 cut(s) 800
BsmFI GGGAC 5 cut(s) 24, 520, 533, 738, 1272
BsnI GGCC 8 cut(s) 325, 378, 468, 661, 942, 975, 1117, 1323
Bsp1286I GDGCHC 1 cut(s) 709
Bsp143I GATC 6 cut(s) 4, 928, 1070, 1153, 1160, 1183
Bsp19I CCATGG 3 cut(s) 21, 506, 583
BspACI CCGC 3 cut(s) 322, 375, 1215
BspANI GGCC 8 cut(s) 325, 378, 468, 661, 942, 975, 1117, 1323
BspCNI CTCAG 2 cut(s) 512, 641
BspLI GGNNCC 4 cut(s) 467, 566, 1116, 1260
BspPI GGATC 4 cut(s) 12, 1161, 1168, 1178
BspTI CTTAAG 2 cut(s) 59, 1202
BsrBI CCGCTC 1 cut(s) 322
BsrI ACTGG 1 cut(s) 1118
BssECI CCNNGG 6 cut(s) 21, 506, 568, 583, 832, 1107
BssMI GATC 6 cut(s) 4, 928, 1070, 1153, 1160, 1183
BssNI GRCGYC 1 cut(s) 533
BssSI CACGAG 2 cut(s) 708, 915
BssT1I CCWWGG 3 cut(s) 21, 506, 583
Bst2BI CACGAG 2 cut(s) 708, 915
Bst2UI CCWGG 5 cut(s) 570, 922, 1109, 1179, 1209
Bst4CI ACNGT 5 cut(s) 200, 232, 811, 833, 1174
BstACI GRCGYC 1 cut(s) 533
BstAFI CTTAAG 2 cut(s) 59, 1202
BstBAI YACGTR 1 cut(s) 690
BstC8I GCNNGC 2 cut(s) 699, 795
BstDEI CTNAG 2 cut(s) 499, 628
BstDSI CCRYGG 4 cut(s) 21, 506, 583, 832
BstEII GGTNACC 2 cut(s) 587, 827
BstENI CCTNNNNNAGG 2 cut(s) 135, 384
BstKTI GATC 6 cut(s) 7, 931, 1073, 1156, 1163, 1186
BstMAI GTCTC 1 cut(s) 800
BstMBI GATC 6 cut(s) 4, 928, 1070, 1153, 1160, 1183
BstMWI GCNNNNNNNGC 1 cut(s) 1221
BstNI CCWGG 5 cut(s) 570, 922, 1109, 1179, 1209
BstNSI RCATGY 1 cut(s) 701
BstPI GGTNACC 2 cut(s) 587, 827
BstSCI CCNGG 6 cut(s) 536, 568, 920, 1107, 1177, 1207
BstSFI CTRYAG 2 cut(s) 135, 196
BstSNI TACGTA 1 cut(s) 690
BstV1I GCAGC 2 cut(s) 432, 777
BstV2I GAAGAC 3 cut(s) 125, 149, 831
BstX2I RGATCY 3 cut(s) 928, 1070, 1153
BstXI CCANNNNNNTGG 2 cut(s) 599, 983
BstYI RGATCY 3 cut(s) 928, 1070, 1153
BsuRI GGCC 8 cut(s) 325, 378, 468, 661, 942, 975, 1117, 1323
BtgI CCRYGG 4 cut(s) 21, 506, 583, 832
BtgZI GCGATG 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 699, 795
CaiI CAGNNNCTG 2 cut(s) 80, 824
Cfr13I GGNCC 6 cut(s) 377, 466, 564, 1115, 1166, 1259
Csp6I GTAC 1 cut(s) 1296
CviAII CATG 7 cut(s) 22, 507, 584, 698, 859, 977, 1001
CviQI GTAC 1 cut(s) 1296
DdeI CTNAG 2 cut(s) 499, 628
DpnI GATC 6 cut(s) 6, 930, 1072, 1155, 1162, 1185
DpnII GATC 6 cut(s) 4, 928, 1070, 1153, 1160, 1183
DrdI GACNNNNNNGTC 1 cut(s) 1266
DriI GACNNNNNGTC 2 cut(s) 618, 835
DseDI GACNNNNNNGTC 1 cut(s) 1266
EaeI YGGCCR 3 cut(s) 323, 973, 1321
Eam1105I GACNNNNNGTC 2 cut(s) 618, 835
Eco105I TACGTA 1 cut(s) 690
Eco130I CCWWGG 3 cut(s) 21, 506, 583
Eco47I GGWCC 3 cut(s) 564, 1166, 1259
Eco57I CTGAAG 1 cut(s) 102
Eco91I GGTNACC 2 cut(s) 587, 827
EcoNI CCTNNNNNAGG 2 cut(s) 135, 384
EcoO109I RGGNCCY 1 cut(s) 564
EcoO65I GGTNACC 2 cut(s) 587, 827
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 5 cut(s) 568, 920, 1107, 1177, 1207
EcoT14I CCWWGG 3 cut(s) 21, 506, 583
EcoT22I ATGCAT 1 cut(s) 1282
ErhI CCWWGG 3 cut(s) 21, 506, 583
FaeI CATG 7 cut(s) 25, 510, 587, 701, 862, 980, 1004
FalI AAGNNNNNCTT 4 cut(s) 364, 396, 728, 760
FaqI GGGAC 5 cut(s) 24, 520, 533, 738, 1272
FatI CATG 7 cut(s) 21, 506, 583, 697, 858, 976, 1000
FauI CCCGC 1 cut(s) 1208
FblI GTMKAC 2 cut(s) 195, 813
Fnu4HI GCNGC 4 cut(s) 323, 376, 446, 791
Fsp4HI GCNGC 4 cut(s) 323, 376, 446, 791
FspBI CTAG 3 cut(s) 932, 1197, 1333
GluI GCNGC 4 cut(s) 323, 376, 446, 791
GsaI CCCAGC 1 cut(s) 684
GsuI CTGGAG 1 cut(s) 1110
HaeIII GGCC 8 cut(s) 325, 378, 468, 661, 942, 975, 1117, 1323
HapII CCGG 4 cut(s) 538, 875, 1191, 1327
Hin1I GRCGYC 1 cut(s) 533
Hin1II CATG 7 cut(s) 25, 510, 587, 701, 862, 980, 1004
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 6 cut(s) 105, 390, 421, 476, 1236, 1247
HpaII CCGG 4 cut(s) 538, 875, 1191, 1327
HphI GGTGA 4 cut(s) 137, 839, 941, 1193
Hpy166II GTNNAC 3 cut(s) 196, 814, 1298
Hpy188I TCNGA 4 cut(s) 76, 502, 555, 1241
Hpy188III TCNNGA 6 cut(s) 48, 387, 710, 932, 1089, 1271
Hpy8I GTNNAC 3 cut(s) 196, 814, 1298
HpyAV CCTTC 3 cut(s) 713, 962, 1043
HpyCH4III ACNGT 5 cut(s) 200, 232, 811, 833, 1174
HpyCH4IV ACGT 4 cut(s) 312, 450, 533, 689
HpyCH4V TGCA 4 cut(s) 448, 764, 1079, 1280
HpyF10VI GCNNNNNNNGC 1 cut(s) 1221
HpyF3I CTNAG 2 cut(s) 499, 628
HpySE526I ACGT 4 cut(s) 312, 450, 533, 689
Hsp92I GRCGYC 1 cut(s) 533
Hsp92II CATG 7 cut(s) 25, 510, 587, 701, 862, 980, 1004
Kzo9I GATC 6 cut(s) 4, 928, 1070, 1153, 1160, 1183
LmnI GCTCC 1 cut(s) 1193
Lsp1109I GCAGC 2 cut(s) 432, 777
LweI GCATC 2 cut(s) 633, 777
MaeI CTAG 3 cut(s) 932, 1197, 1333
MaeII ACGT 4 cut(s) 312, 450, 533, 689
MaeIII GTNAC 4 cut(s) 63, 587, 827, 986
MalI GATC 6 cut(s) 6, 930, 1072, 1155, 1162, 1185
MbiI CCGCTC 1 cut(s) 322
MboI GATC 6 cut(s) 4, 928, 1070, 1153, 1160, 1183
MboII GAAGA 7 cut(s) 130, 154, 266, 444, 728, 831, 1058
MflI RGATCY 3 cut(s) 928, 1070, 1153
MhlI GDGCHC 1 cut(s) 709
MlsI TGGCCA 1 cut(s) 975
MluCI AATT 4 cut(s) 556, 654, 851, 1095
MluNI TGGCCA 1 cut(s) 975
MlyI GAGTC 3 cut(s) 384, 470, 1241
MmeI TCCRAC 1 cut(s) 1193
MnlI CCTC 7 cut(s) 31, 44, 326, 456, 522, 1013, 1031
Mox20I TGGCCA 1 cut(s) 975
Mph1103I ATGCAT 1 cut(s) 1282
MscI TGGCCA 1 cut(s) 975
MseI TTAA 3 cut(s) 60, 1203, 1284
MslI CAYNNNNRTG 1 cut(s) 702
Msp20I TGGCCA 1 cut(s) 975
MspA1I CMGCKG 2 cut(s) 32, 632
MspCI CTTAAG 2 cut(s) 59, 1202
MspI CCGG 4 cut(s) 538, 875, 1191, 1327
MspR9I CCNGG 6 cut(s) 538, 570, 922, 1109, 1179, 1209
MvaI CCWGG 5 cut(s) 570, 922, 1109, 1179, 1209
MwoI GCNNNNNNNGC 1 cut(s) 1221
NciI CCSGG 1 cut(s) 538
NcoI CCATGG 3 cut(s) 21, 506, 583
NdeII GATC 6 cut(s) 4, 928, 1070, 1153, 1160, 1183
NlaIII CATG 7 cut(s) 25, 510, 587, 701, 862, 980, 1004
NlaIV GGNNCC 4 cut(s) 467, 566, 1116, 1260
NmuCI GTSAC 1 cut(s) 827
NsiI ATGCAT 1 cut(s) 1282
NspI RCATGY 1 cut(s) 701
PaeI GCATGC 1 cut(s) 701
PfeI GAWTC 3 cut(s) 105, 421, 1236
PfoI TCCNGGA 1 cut(s) 536
PkrI GCNGC 4 cut(s) 324, 377, 447, 792
PleI GAGTC 3 cut(s) 384, 470, 1241
PpsI GAGTC 3 cut(s) 384, 470, 1241
Ppu21I YACGTR 1 cut(s) 690
PpuMI RGGWCCY 1 cut(s) 564
Psp1406I AACGTT 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 564
Psp6I CCWGG 5 cut(s) 568, 920, 1107, 1177, 1207
PspEI GGTNACC 2 cut(s) 587, 827
PspFI CCCAGC 1 cut(s) 680
PspGI CCWGG 5 cut(s) 568, 920, 1107, 1177, 1207
PspN4I GGNNCC 4 cut(s) 467, 566, 1116, 1260
PspPI GGNCC 6 cut(s) 377, 466, 564, 1115, 1166, 1259
PspPPI RGGWCCY 1 cut(s) 564
PstNI CAGNNNCTG 2 cut(s) 80, 824
PsuI RGATCY 3 cut(s) 928, 1070, 1153
PvuII CAGCTG 2 cut(s) 32, 632
RsaI GTAC 1 cut(s) 1297
RsaNI GTAC 1 cut(s) 1296
RseI CAYNNNNRTG 1 cut(s) 702
SaqAI TTAA 3 cut(s) 60, 1203, 1284
SatI GCNGC 4 cut(s) 323, 376, 446, 791
Sau3AI GATC 6 cut(s) 4, 928, 1070, 1153, 1160, 1183
Sau96I GGNCC 6 cut(s) 377, 466, 564, 1115, 1166, 1259
SchI GAGTC 3 cut(s) 384, 470, 1241
ScrFI CCNGG 6 cut(s) 538, 570, 922, 1109, 1179, 1209
SduI GDGCHC 1 cut(s) 709
SfaNI GCATC 2 cut(s) 633, 777
SfcI CTRYAG 2 cut(s) 135, 196
SinI GGWCC 3 cut(s) 564, 1166, 1259
SmiMI CAYNNNNRTG 1 cut(s) 702
SmlI CTYRAG 3 cut(s) 59, 803, 1202
SmoI CTYRAG 3 cut(s) 59, 803, 1202
SnaBI TACGTA 1 cut(s) 690
SphI GCATGC 1 cut(s) 701
Sse9I AATT 4 cut(s) 556, 654, 851, 1095
SsiI CCGC 3 cut(s) 322, 375, 1215
SspMI CTAG 3 cut(s) 932, 1197, 1333
StyD4I CCNGG 6 cut(s) 536, 568, 920, 1107, 1177, 1207
StyI CCWWGG 3 cut(s) 21, 506, 583
TaaI ACNGT 5 cut(s) 200, 232, 811, 833, 1174
TaiI ACGT 4 cut(s) 315, 453, 536, 692
TasI AATT 4 cut(s) 556, 654, 851, 1095
TauI GCSGC 2 cut(s) 325, 378
TfiI GAWTC 3 cut(s) 105, 421, 1236
Tru1I TTAA 3 cut(s) 60, 1203, 1284
Tru9I TTAA 3 cut(s) 60, 1203, 1284
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 2 cut(s) 445, 790
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 4 cut(s) 323, 729, 1017, 1059
TspGWI ACGGA 1 cut(s) 1166
Vha464I CTTAAG 2 cut(s) 59, 1202
VpaK11BI GGWCC 3 cut(s) 564, 1166, 1259
XagI CCTNNNNNAGG 2 cut(s) 135, 384
XapI RAATTY 3 cut(s) 556, 851, 1095
XbaI TCTAGA 1 cut(s) 931
XceI RCATGY 1 cut(s) 701
XmiI GTMKAC 2 cut(s) 195, 813
XspI CTAG 3 cut(s) 932, 1197, 1333
ZraI GACGTC 1 cut(s) 534
Zsp2I ATGCAT 1 cut(s) 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.