Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8452603.1

Orthogroup ID

OG0010341

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1724

Gene Structure 1723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8452603.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

gacccctggcacacttatccatggtaaccaacttgatggtagcaacttgaccattggtcgcatctcggctggtattgattacagccgtccaattagaccaaagtggagcggaacggctgggcttacctttcagcatgctggtgctcgtgatgaaaaaggaagtcctattatcaaggatttcttcagcagtcccctaactgcaagtggtaatagctatgatgatatgctgcttgctaaacttgagactgtctacacaggttctggtgacagtgggtcttcaatgttgaaattcaacatggaacaaggacttccagttttgcctgattggttgtttttcaacagaatgaacgctcgtgccaggaaagatctagaaattggccctactcaccttctttttagcgtatctggtggccatgtggttggtaacttcccaccacatgaagcatttgtcattggtggaacaaatagtgtaagaggttatgaagagggtgctgtgggttctggtagatcttatgcggttggctgtggagaaatttctttccccctgttggggccagttgggggagttatttttgctgactatggcacggatcttgcatcaggtccaactgttcctggtagaaagctcaatgtcacccgagacatggctaagagtgaaggtttggcatttgatgtaatacttgaggatgggttgggctttggttctttgaaaccatacccttttaatttttggtccgacaaaatctttggaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag POTRA

Protein Analysis

250

Amino Acids

26.57

Weight (kDa)

5.72

Isoelectric Point (pI)

24.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19620
fragaria_vesca	FvH4_3g43030 FvH4_3g43030 FvH4_3g43030 FvH4_3g43030
malus_domestica	MD03G1024500.v1.1 MD11G1029600.v1.1
prunus_persica	Prupe.6G023900_v2.0.a1 Prupe.6G023900_v2.0.a1
pyrus_communis	pycom03g02130 pycom11g02310
rosa_chinensis	RchiOBHm_Chr5g0077091
rosa_laevigata	RLG00000036659
rosa_multiflora	Rmu_co8452603.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005020
rosa_rugosa	Rorug05G0451500
rosa_samantha	Rh5AG505600 Rh5BG527600 Rh5CG551900 Rh5DG540000
rosa_wichuraiana	Rw5G047070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	250
AciI	CCGC	2 cut(s)	109, 516
AclWI	GGATC	1 cut(s)	598
AcoI	YGGCCR	1 cut(s)	410
AcsI	RAATTY	2 cut(s)	288, 532
AcuI	CTGAAG	1 cut(s)	167
AfiI	CCNNNNNNNGG	5 cut(s)	548, 549, 550, 561, 644
AgsI	TTSAA	5 cut(s)	280, 287, 293, 338, 710
AhdI	GACNNNNNGTC	2 cut(s)	55, 272
AjnI	CCWGG	3 cut(s)	5, 357, 614
AluBI	AGCT	2 cut(s)	214, 626
AluI	AGCT	2 cut(s)	214, 626
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	2 cut(s)	237, 634
AlwI	GGATC	1 cut(s)	598
AlwNI	CAGNNNCTG	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	637
AoxI	GGCC	3 cut(s)	377, 410, 552
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	2 cut(s)	288, 532
ArsI	GACNNNNNNTTYG	1 cut(s)	729
AspS9I	GGNCC	4 cut(s)	378, 552, 603, 733
AsuHPI	GGTGA	3 cut(s)	276, 378, 626
AvaI	CYCGRG	1 cut(s)	637
AvaII	GGWCC	2 cut(s)	603, 733
BalI	TGGCCA	1 cut(s)	412
BauI	CACGAG	2 cut(s)	145, 352
BbsI	GAAGAC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	2 cut(s)	30, 681
BceAI	ACGGC	2 cut(s)	70, 130
BciT130I	CCWGG	3 cut(s)	7, 359, 616
BcoDI	GTCTC	2 cut(s)	237, 634
BfaI	CTAG	1 cut(s)	369
BglII	AGATCT	2 cut(s)	365, 507
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	3 cut(s)	7, 359, 616
Bme18I	GGWCC	2 cut(s)	603, 733
BmeRI	GACNNNNNGTC	2 cut(s)	55, 272
BmeT110I	CYCGRG	1 cut(s)	637
BmgT120I	GGNCC	4 cut(s)	378, 552, 603, 733
BmiI	GGNNCC	1 cut(s)	553
BmrFI	CCNGG	3 cut(s)	7, 359, 616
BmsI	GCATC	2 cut(s)	70, 606
BpiI	GAAGAC	1 cut(s)	268
BpuEI	CTTGAG	2 cut(s)	261, 702
BsaJI	CCNNGG	2 cut(s)	5, 20
Bsc4I	CCNNNNNNNGG	5 cut(s)	548, 549, 550, 561, 644
Bse1I	ACTGG	2 cut(s)	312, 555
BseBI	CCWGG	3 cut(s)	7, 359, 616
BseDI	CCNNGG	2 cut(s)	5, 20
BseGI	GGATG	1 cut(s)	692
BseLI	CCNNNNNNNGG	5 cut(s)	548, 549, 550, 561, 644
BseNI	ACTGG	2 cut(s)	312, 555
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	1 cut(s)	117
BshFI	GGCC	3 cut(s)	379, 412, 554
BsiHKAI	GWGCWC	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	637
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	5 cut(s)	548, 549, 550, 561, 644
BsmAI	GTCTC	2 cut(s)	237, 634
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	3 cut(s)	379, 412, 554
BsoBI	CYCGRG	1 cut(s)	637
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	365, 507, 590
Bsp19I	CCATGG	1 cut(s)	20
BspACI	CCGC	2 cut(s)	109, 516
BspANI	GGCC	3 cut(s)	379, 412, 554
BspLI	GGNNCC	1 cut(s)	553
BspPI	GGATC	1 cut(s)	598
BsrBI	CCGCTC	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	312, 555
BssECI	CCNNGG	2 cut(s)	5, 20
BssMI	GATC	3 cut(s)	365, 507, 590
BssSI	CACGAG	2 cut(s)	145, 352
BssT1I	CCWWGG	1 cut(s)	20
Bst2BI	CACGAG	2 cut(s)	145, 352
Bst2UI	CCWGG	3 cut(s)	7, 359, 616
Bst4CI	ACNGT	3 cut(s)	248, 270, 611
Bst6I	CTCTTC	1 cut(s)	478
BstC8I	GCNNGC	2 cut(s)	136, 232
BstDEI	CTNAG	1 cut(s)	649
BstDSI	CCRYGG	1 cut(s)	20
BstEII	GGTNACC	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	692
BstKTI	GATC	3 cut(s)	368, 510, 593
BstMAI	GTCTC	2 cut(s)	237, 634
BstMBI	GATC	3 cut(s)	365, 507, 590
BstNI	CCWGG	3 cut(s)	7, 359, 616
BstNSI	RCATGY	1 cut(s)	138
BstPI	GGTNACC	1 cut(s)	24
BstSCI	CCNGG	3 cut(s)	5, 357, 614
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	268
BstX2I	RGATCY	3 cut(s)	365, 507, 590
BstXI	CCANNNNNNTGG	2 cut(s)	36, 420
BstYI	RGATCY	3 cut(s)	365, 507, 590
BsuRI	GGCC	3 cut(s)	379, 412, 554
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	692
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	2 cut(s)	136, 232
CaiI	CAGNNNCTG	1 cut(s)	261
Cfr13I	GGNCC	4 cut(s)	378, 552, 603, 733
CviAII	CATG	6 cut(s)	21, 135, 296, 414, 438, 644
DdeI	CTNAG	1 cut(s)	649
DpnI	GATC	3 cut(s)	367, 509, 592
DpnII	GATC	3 cut(s)	365, 507, 590
DriI	GACNNNNNGTC	2 cut(s)	55, 272
EaeI	YGGCCR	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	478
Eam1105I	GACNNNNNGTC	2 cut(s)	55, 272
EarI	CTCTTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	603, 733
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	637
Eco91I	GGTNACC	1 cut(s)	24
EcoO65I	GGTNACC	1 cut(s)	24
EcoRII	CCWGG	3 cut(s)	5, 357, 614
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	6 cut(s)	24, 138, 299, 417, 441, 647
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	6 cut(s)	20, 134, 295, 413, 437, 643
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	699
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	1 cut(s)	228
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	3 cut(s)	379, 412, 554
Hin1II	CATG	6 cut(s)	24, 138, 299, 417, 441, 647
HphI	GGTGA	3 cut(s)	276, 378, 626
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	737
Hpy188III	TCNNGA	2 cut(s)	147, 369
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	399, 651
HpyCH4III	ACNGT	3 cut(s)	248, 270, 611
HpyCH4V	TGCA	2 cut(s)	201, 597
HpyF3I	CTNAG	1 cut(s)	649
Hsp92II	CATG	6 cut(s)	24, 138, 299, 417, 441, 647
Kzo9I	GATC	3 cut(s)	365, 507, 590
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	70, 606
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	4 cut(s)	24, 264, 423, 632
MalI	GATC	3 cut(s)	367, 509, 592
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	3 cut(s)	365, 507, 590
MboII	GAAGA	3 cut(s)	173, 268, 495
MflI	RGATCY	3 cut(s)	365, 507, 590
MhlI	GDGCHC	1 cut(s)	146
MlsI	TGGCCA	1 cut(s)	412
MluCI	AATT	5 cut(s)	91, 288, 373, 532, 725
MluNI	TGGCCA	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	630
MnlI	CCTC	3 cut(s)	468, 479, 677
Mox20I	TGGCCA	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	412
MseI	TTAA	1 cut(s)	724
MslI	CAYNNNNRTG	1 cut(s)	139
Msp20I	TGGCCA	1 cut(s)	412
MspR9I	CCNGG	3 cut(s)	7, 359, 616
MvaI	CCWGG	3 cut(s)	7, 359, 616
NcoI	CCATGG	1 cut(s)	20
NdeII	GATC	3 cut(s)	365, 507, 590
NlaIII	CATG	6 cut(s)	24, 138, 299, 417, 441, 647
NlaIV	GGNNCC	1 cut(s)	553
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	264, 632
NspI	RCATGY	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	229
Psp6I	CCWGG	3 cut(s)	5, 357, 614
PspEI	GGTNACC	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	3 cut(s)	5, 357, 614
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	4 cut(s)	378, 552, 603, 733
PstNI	CAGNNNCTG	1 cut(s)	261
PsuI	RGATCY	3 cut(s)	365, 507, 590
RseI	CAYNNNNRTG	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	724
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	365, 507, 590
Sau96I	GGNCC	4 cut(s)	378, 552, 603, 733
ScrFI	CCNGG	3 cut(s)	7, 359, 616
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	8 cut(s)	129, 216, 260, 391, 479, 605, 628, 662
SfaNI	GCATC	2 cut(s)	70, 606
SinI	GGWCC	2 cut(s)	603, 733
SmiMI	CAYNNNNRTG	1 cut(s)	139
SmlI	CTYRAG	2 cut(s)	240, 681
SmoI	CTYRAG	2 cut(s)	240, 681
SphI	GCATGC	1 cut(s)	138
Sse9I	AATT	5 cut(s)	91, 288, 373, 532, 725
SsiI	CCGC	2 cut(s)	109, 516
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	3 cut(s)	5, 357, 614
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	3 cut(s)	248, 270, 611
TasI	AATT	5 cut(s)	91, 288, 373, 532, 725
Tru1I	TTAA	1 cut(s)	724
Tru9I	TTAA	1 cut(s)	724
TscAI	CASTG	1 cut(s)	275
TseFI	GTSAC	2 cut(s)	264, 632
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	2 cut(s)	264, 632
TspDTI	ATGAA	4 cut(s)	166, 360, 454, 496
TspGWI	ACGGA	1 cut(s)	603
TspRI	CASTG	1 cut(s)	275
VpaK11BI	GGWCC	2 cut(s)	603, 733
XapI	RAATTY	2 cut(s)	288, 532
XbaI	TCTAGA	1 cut(s)	368
XceI	RCATGY	1 cut(s)	138
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.