FvH4_3g43470

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014707
Physical Location & Seq
Forward (+)
36217945 .. 36220487
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43470.t1

Sequence Viewer

Length: 1587 bp
ATGAAGTCTTTTTCAGTGTTCAAGTTCTCCCCAGACCATTTTGCTTATTGCTTGCAGAAATGCCTGAAAGCAAAGACTTTGAGACAAGGGAAGCAAGTCCATGCAGTGTTGTTATTAACTGGGTTTGACATGAACTTGTTATCTATGAGCTCCAAGCTTGTTGGCATGTACGCAAGTTGTGGGGATGTGAGTTCTGCACGGAAGGTGTTTGATGAAATTCCCAACCCAAATGTGTTCTCATTGAATTGGATGGTTTTGGCTTCGGCGTTTAATGGGTGGTTTGAGCAAGCAATTGGGTACTTTTCTTTGATGCAAGAGATGGGAATGGTTGGGAATAAGTTCAGTTTTCCTGTGATGCTTAAGGTTTGTGTTGGTTTGATGGATTTGAATAAGGGGAAGGAAGTTCATGCTGTGGTGTATAAGATGGGGTTCGAAAAGGATGTTGCTTTGGGGAATACATTGGTTGATATGTATTGCAAATGTGGAAGCTTGTGTTATGGTCATAGAGTTTTTGATCGAATGCATGAAAGAGATGTAGCTTCTTGGACATCTATGATATGTGGGTATTGTAATGTGGGAAGGACTGATCAAGGGGCAATGTTGTTTGAGAGGATGAAGTTAGAGGGGTTGGAACCGAATGATTTCACTTGGAATGCAGTGATAGCCGGGTATGCTCGGAGTGGAGATAGCAATCGAGTATATGTGCTGCTATCTAGGATGACTAAAGAAGGGTTTGTTCCTGATTTGGTTACATGGAATGCAATAATTTCAGGTTTTACCCAAAGCCAGGAGGCAGGTGAAGCCTTTAAGTTTTTCAGTGCTATGTTAGTGTCTGGAGTTAAACCCAACCTGGTCACTATCACAGGTTTGCTCCCAGCTTGTGGATTGATTGGTTCAGTTGAAAGAGGGAGAGAGATTCATGGATTGATATTTAGGATGGGGTTTGACATCAATGTCTTTGTTGCTAGTGCTCTTATTGACATGTACTCGAAATGTGGCAGTGTTAAAAATGCTCGAAGTGTATTTGACTGGACTCCTGTAAACAATGTTGCGTCGTGGAATGCAATGATTGGATGTTATGGTAAGCATGGTCTGGTTGATTCTGCGGTAGAGCTTTTCGATAGAATGCAAGAGGAAGGAGTTCAGGCTACTGTAGTGACTTTAACTTCTGTACTTTCTGCATGCAGCCATAGTGGTTCTGTAGAAAAGGGTTTAGAGATATTCAGGTCCATGAAAGAGAGCCATGGAATTGTGGTGTGTAAAGAACATTATGGGTGTGTTGTTGATCTCTTGTGCCGTTCAGGGAAGATGGTAGAAGCTTACGAGTTTGTAAAGTCCATTCCAATAAATGTCACCGAATCCATGATTGGAGCTTTTTTCAACGGGTGTAAAGTCCATGAAAGGAGAGATCTTGCTAAATTGATGGCTGATGATATTCTAAAAATGGAGTTAAAGAGACCTGGAGGTTTTGTAACACTTTCAAATATCTATGCTGCTGATGGAGAGTGGGAAGAAGTTGAGTATGTAAGGAAGGTGATGAAGCAGAGGAAGGTCCTTAAGAAACCTGGATTTAGTTGGCTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

529

Amino Acids

58.78

Weight (kDa)

8.2

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 177 - 218 5.7e-10 PPR repeat family
PPR PF01535 181 - 210 4.4e-06 PPR repeat
PPR_long PF17177 196 - 302 1.2e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 214 - 251 2.2e-06 PPR repeat family
PPR_3 PF13812 236 - 295 6.4e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 247 - 294 6.9e-11 PPR repeat family
PPR_2 PF13041 349 - 396 3.4e-12 PPR repeat family
PPR_1 PF12854 349 - 377 4e-06 PPR repeat
PPR PF01535 352 - 381 3.2e-10 PPR repeat
E_motif PF20431 469 - 527 8.9e-14 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014707)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43470
malus_domestica MD11G1024300.v1.1
prunus_persica Prupe.6G020300_v2.0.a1
pyrus_communis pycom11g01920
rosa_chinensis RchiOBHm_Chr5g0077881
rosa_laevigata RLG00000036722
rosa_multiflora Rmu_co8015760.1_g000001 Rmu_sc0031428.1_g000002 Rmu_ssc0000186.1_g000002
rosa_roxburghii Rroxscaffold_1G00004300
rosa_rugosa Rorug05G0456900 Rorug05G0456900
rosa_samantha Rh5AG511300 Rh5BG534000 Rh5CG557500 Rh5DG545500
rosa_wichuraiana Rw5G047450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 785
AasI GACNNNNNNGTC 1 cut(s) 953
Acc36I ACCTGC 1 cut(s) 785
AccB7I CCANNNNNTGG 1 cut(s) 881
AciI CCGC 1 cut(s) 1106
AcsI RAATTY 1 cut(s) 216
AfaI GTAC 4 cut(s) 170, 299, 986, 1173
AfiI CCNNNNNNNGG 2 cut(s) 787, 881
AflII CTTAAG 2 cut(s) 359, 1556
AflIII ACRYGT 1 cut(s) 981
AgsI TTSAA 6 cut(s) 22, 244, 388, 902, 1381, 1482
AjnI CCWGG 4 cut(s) 786, 849, 1459, 1564
AjuI GAANNNNNNNTTGG 2 cut(s) 1350, 1382
AluBI AGCT 8 cut(s) 150, 157, 489, 539, 878, 1114, 1319, 1373
AluI AGCT 8 cut(s) 150, 157, 489, 539, 878, 1114, 1319, 1373
Alw21I GWGCWC 2 cut(s) 152, 973
Alw26I GTCTC 2 cut(s) 76, 1450
ApeKI GCWGC 3 cut(s) 706, 1185, 1493
ApoI RAATTY 1 cut(s) 216
Asp700I GAANNNNTTC 3 cut(s) 338, 641, 1140
AspS9I GGNCC 2 cut(s) 1227, 1552
AsuC2I CCSGG 1 cut(s) 667
AsuHPI GGTGA 3 cut(s) 809, 1345, 1546
AsuII TTCGAA 1 cut(s) 432
AvaII GGWCC 2 cut(s) 1227, 1552
BanII GRGCYC 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 152, 973
BbvI GCAGC 3 cut(s) 693, 1197, 1480
BccI CCATC 8 cut(s) 244, 313, 373, 418, 931, 1303, 1417, 1493
BceAI ACGGC 1 cut(s) 1281
BciT130I CCWGG 4 cut(s) 788, 851, 1461, 1566
BclI TGATCA 1 cut(s) 586
BcnI CCSGG 1 cut(s) 667
BcoDI GTCTC 2 cut(s) 76, 1450
BfaI CTAG 2 cut(s) 714, 966
BfmI CTRYAG 2 cut(s) 1152, 1200
BfrI CTTAAG 2 cut(s) 359, 1556
BfuAI ACCTGC 1 cut(s) 785
BglII AGATCT 1 cut(s) 1408
BisI GCNGC 3 cut(s) 707, 1186, 1494
BlsI GCNGC 3 cut(s) 708, 1187, 1495
Bme1390I CCNGG 5 cut(s) 667, 788, 851, 1461, 1566
Bme18I GGWCC 2 cut(s) 1227, 1552
BmgT120I GGNCC 2 cut(s) 1227, 1552
BmiI GGNNCC 1 cut(s) 633
BmrFI CCNGG 5 cut(s) 667, 788, 851, 1461, 1566
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 300, 345
BmuI ACTGGG 1 cut(s) 129
BpmI CTGGAG 2 cut(s) 855, 1482
Bpu14I TTCGAA 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 667
BsaBI GATNNNNATC 1 cut(s) 690
BsaI GGTCTC 1 cut(s) 1450
BsaJI CCNNGG 1 cut(s) 1243
BsaXI ACNNNNNCTCC 2 cut(s) 1455, 1485
Bsc4I CCNNNNNNNGG 2 cut(s) 787, 881
Bse1I ACTGG 2 cut(s) 124, 1034
Bse3DI GCAATG 2 cut(s) 603, 1071
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 4 cut(s) 788, 851, 1461, 1566
BseDI CCNNGG 1 cut(s) 1243
BseGI GGATG 7 cut(s) 190, 255, 445, 618, 723, 942, 1079
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 2 cut(s) 787, 881
BseMI GCAATG 2 cut(s) 603, 1071
BseNI ACTGG 2 cut(s) 124, 1034
BseXI GCAGC 3 cut(s) 693, 1197, 1480
BseYI CCCAGC 1 cut(s) 874
BsgI GTGCAG 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 152, 973
BsiSI CCGG 1 cut(s) 666
BslI CCNNNNNNNGG 2 cut(s) 787, 881
BsmAI GTCTC 2 cut(s) 76, 1450
BsmI GAATGC 5 cut(s) 525, 658, 763, 1066, 1131
Bso31I GGTCTC 1 cut(s) 1450
Bsp119I TTCGAA 1 cut(s) 432
Bsp1286I GDGCHC 2 cut(s) 152, 973
Bsp143I GATC 4 cut(s) 514, 586, 1285, 1408
Bsp19I CCATGG 1 cut(s) 1243
BspACI CCGC 1 cut(s) 1106
BspLI GGNNCC 1 cut(s) 633
BspMI ACCTGC 1 cut(s) 785
BspT104I TTCGAA 1 cut(s) 432
BspTI CTTAAG 2 cut(s) 359, 1556
BspTNI GGTCTC 1 cut(s) 1450
BsrDI GCAATG 2 cut(s) 603, 1071
BsrI ACTGG 2 cut(s) 124, 1034
BssECI CCNNGG 1 cut(s) 1243
BssMI GATC 4 cut(s) 514, 586, 1285, 1408
BssT1I CCWWGG 1 cut(s) 1243
Bst2UI CCWGG 4 cut(s) 788, 851, 1461, 1566
Bst4CI ACNGT 1 cut(s) 1153
BstAFI CTTAAG 2 cut(s) 359, 1556
BstBI TTCGAA 1 cut(s) 432
BstC8I GCNNGC 3 cut(s) 53, 288, 1183
BstDSI CCRYGG 1 cut(s) 1243
BstF5I GGATG 7 cut(s) 190, 255, 445, 618, 723, 942, 1079
BstKTI GATC 4 cut(s) 517, 589, 1288, 1411
BstMAI GTCTC 2 cut(s) 76, 1450
BstMBI GATC 4 cut(s) 514, 586, 1285, 1408
BstMWI GCNNNNNNNGC 3 cut(s) 662, 671, 800
BstNI CCWGG 4 cut(s) 788, 851, 1461, 1566
BstNSI RCATGY 3 cut(s) 169, 985, 1185
BstSCI CCNGG 5 cut(s) 665, 786, 849, 1459, 1564
BstSFI CTRYAG 2 cut(s) 1152, 1200
BstV1I GCAGC 3 cut(s) 693, 1197, 1480
BstX2I RGATCY 1 cut(s) 1408
BstYI RGATCY 1 cut(s) 1408
BtgI CCRYGG 1 cut(s) 1243
BtsCI GGATG 7 cut(s) 190, 255, 445, 618, 723, 942, 1079
BtsI GCAGTG 3 cut(s) 111, 663, 1006
BtsIMutI CAGTG 5 cut(s) 21, 111, 663, 823, 1006
BveI ACCTGC 1 cut(s) 785
Cac8I GCNNGC 3 cut(s) 53, 288, 1183
Cfr13I GGNCC 2 cut(s) 1227, 1552
CseI GACGC 1 cut(s) 1041
CsiI ACCWGGT 1 cut(s) 849
Csp6I GTAC 4 cut(s) 169, 298, 985, 1172
CviQI GTAC 4 cut(s) 169, 298, 985, 1172
DpnI GATC 4 cut(s) 516, 588, 1287, 1410
DpnII GATC 4 cut(s) 514, 586, 1285, 1408
DrdI GACNNNNNNGTC 1 cut(s) 953
DseDI GACNNNNNNGTC 1 cut(s) 953
Ecl136II GAGCTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 1243
Eco24I GRGCYC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 1450
Eco47I GGWCC 2 cut(s) 1227, 1552
Eco53kI GAGCTC 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 1552
EcoRII CCWGG 4 cut(s) 786, 849, 1459, 1564
EcoT14I CCWWGG 1 cut(s) 1243
EcoT22I ATGCAT 1 cut(s) 525
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 1243
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 3 cut(s) 707, 1186, 1494
FokI GGATG 7 cut(s) 197, 262, 452, 625, 730, 949, 1086
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 3 cut(s) 707, 1186, 1494
FspBI CTAG 2 cut(s) 714, 966
GluI GCNGC 3 cut(s) 707, 1186, 1494
GsaI CCCAGC 1 cut(s) 878
GsuI CTGGAG 2 cut(s) 855, 1482
HapII CCGG 1 cut(s) 666
HgaI GACGC 1 cut(s) 1041
HindIII AAGCTT 3 cut(s) 155, 487, 1317
HinfI GANTC 4 cut(s) 916, 1033, 1100, 1358
HpaII CCGG 1 cut(s) 666
HphI GGTGA 3 cut(s) 809, 1345, 1546
Hpy166II GTNNAC 1 cut(s) 1042
Hpy188I TCNGA 1 cut(s) 678
Hpy188III TCNNGA 2 cut(s) 740, 834
Hpy8I GTNNAC 1 cut(s) 1042
Hpy99I CGWCG 1 cut(s) 1057
HpyAV CCTTC 7 cut(s) 196, 391, 573, 722, 1130, 1525, 1543
HpyCH4III ACNGT 1 cut(s) 1153
HpyF10VI GCNNNNNNNGC 3 cut(s) 662, 671, 800
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 4 cut(s) 514, 586, 1285, 1408
LmnI GCTCC 3 cut(s) 155, 876, 1370
Lsp1109I GCAGC 3 cut(s) 693, 1197, 1480
LweI GCATC 2 cut(s) 300, 345
MabI ACCWGGT 1 cut(s) 849
MaeI CTAG 2 cut(s) 714, 966
MaeIII GTNAC 5 cut(s) 748, 853, 1156, 1351, 1471
MalI GATC 4 cut(s) 516, 588, 1287, 1410
MboI GATC 4 cut(s) 514, 586, 1285, 1408
MboII GAAGA 2 cut(s) 1318, 1523
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 1 cut(s) 1408
MhlI GDGCHC 2 cut(s) 152, 973
MluCI AATT 6 cut(s) 216, 244, 291, 765, 1248, 1418
MlyI GAGTC 1 cut(s) 1027
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 7 cut(s) 603, 616, 784, 899, 1126, 1457, 1539
Mph1103I ATGCAT 1 cut(s) 525
MroXI GAANNNNTTC 3 cut(s) 338, 641, 1140
MseI TTAA 9 cut(s) 116, 270, 360, 807, 840, 1005, 1163, 1451, 1557
MspCI CTTAAG 2 cut(s) 359, 1556
MspI CCGG 1 cut(s) 666
MspR9I CCNGG 5 cut(s) 667, 788, 851, 1461, 1566
MunI CAATTG 1 cut(s) 291
Mva1269I GAATGC 5 cut(s) 525, 658, 763, 1066, 1131
MvaI CCWGG 4 cut(s) 788, 851, 1461, 1566
MwoI GCNNNNNNNGC 3 cut(s) 662, 671, 800
NciI CCSGG 1 cut(s) 667
NcoI CCATGG 1 cut(s) 1243
NdeII GATC 4 cut(s) 514, 586, 1285, 1408
NlaIV GGNNCC 1 cut(s) 633
NmuCI GTSAC 3 cut(s) 853, 1156, 1351
NsiI ATGCAT 1 cut(s) 525
NspI RCATGY 3 cut(s) 169, 985, 1185
NspV TTCGAA 1 cut(s) 432
PaeI GCATGC 1 cut(s) 1185
PaqCI CACCTGC 1 cut(s) 785
PciI ACATGT 1 cut(s) 981
PctI GAATGC 5 cut(s) 525, 658, 763, 1066, 1131
PdmI GAANNNNTTC 3 cut(s) 338, 641, 1140
PfeI GAWTC 3 cut(s) 916, 1100, 1358
PflMI CCANNNNNTGG 1 cut(s) 881
PkrI GCNGC 3 cut(s) 708, 1187, 1495
PleI GAGTC 1 cut(s) 1027
PpsI GAGTC 1 cut(s) 1027
PpuMI RGGWCCY 1 cut(s) 1552
PscI ACATGT 1 cut(s) 981
Psp124BI GAGCTC 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 1552
Psp6I CCWGG 4 cut(s) 786, 849, 1459, 1564
PspFI CCCAGC 1 cut(s) 874
PspGI CCWGG 4 cut(s) 786, 849, 1459, 1564
PspN4I GGNNCC 1 cut(s) 633
PspPI GGNCC 2 cut(s) 1227, 1552
PspPPI RGGWCCY 1 cut(s) 1552
PsuI RGATCY 1 cut(s) 1408
RsaI GTAC 4 cut(s) 170, 299, 986, 1173
RsaNI GTAC 4 cut(s) 169, 298, 985, 1172
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 9 cut(s) 116, 270, 360, 807, 840, 1005, 1163, 1451, 1557
SatI GCNGC 3 cut(s) 707, 1186, 1494
Sau3AI GATC 4 cut(s) 514, 586, 1285, 1408
Sau96I GGNCC 2 cut(s) 1227, 1552
SchI GAGTC 1 cut(s) 1027
ScrFI CCNGG 5 cut(s) 667, 788, 851, 1461, 1566
SduI GDGCHC 2 cut(s) 152, 973
SexAI ACCWGGT 1 cut(s) 849
SfaNI GCATC 2 cut(s) 300, 345
SfcI CTRYAG 2 cut(s) 1152, 1200
SfuI TTCGAA 1 cut(s) 432
SinI GGWCC 2 cut(s) 1227, 1552
SmlI CTYRAG 2 cut(s) 359, 1556
SmoI CTYRAG 2 cut(s) 359, 1556
SphI GCATGC 1 cut(s) 1185
Sse9I AATT 6 cut(s) 216, 244, 291, 765, 1248, 1418
SsiI CCGC 1 cut(s) 1106
SspMI CTAG 2 cut(s) 714, 966
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 5 cut(s) 665, 786, 849, 1459, 1564
StyI CCWWGG 1 cut(s) 1243
TaaI ACNGT 1 cut(s) 1153
TaqI TCGA 6 cut(s) 432, 517, 694, 989, 1015, 1119
TasI AATT 6 cut(s) 216, 244, 291, 765, 1248, 1418
TatI WGTACW 2 cut(s) 984, 1171
TfiI GAWTC 3 cut(s) 916, 1100, 1358
Tru1I TTAA 9 cut(s) 116, 270, 360, 807, 840, 1005, 1163, 1451, 1557
Tru9I TTAA 9 cut(s) 116, 270, 360, 807, 840, 1005, 1163, 1451, 1557
TscAI CASTG 5 cut(s) 21, 111, 663, 823, 1006
TseFI GTSAC 3 cut(s) 853, 1156, 1351
TseI GCWGC 3 cut(s) 706, 1185, 1493
Tsp45I GTSAC 3 cut(s) 853, 1156, 1351
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 5 cut(s) 21, 111, 663, 823, 1006
Van91I CCANNNNNTGG 1 cut(s) 881
Vha464I CTTAAG 2 cut(s) 359, 1556
VpaK11BI GGWCC 2 cut(s) 1227, 1552
XapI RAATTY 1 cut(s) 216
XceI RCATGY 3 cut(s) 169, 985, 1185
XmnI GAANNNNTTC 3 cut(s) 338, 641, 1140
XspI CTAG 2 cut(s) 714, 966
Zsp2I ATGCAT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.