Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8015760.1

Orthogroup ID

OG0014707

Physical Location & Seq

Genomic Coordinates Reverse (-)

47 .. 508

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8015760.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgcaagagggaggagttcaggctaatgaagtgactttgagttgtgtactttctgcatgcagccatagtggttctgtagaaaagggtttagagatattcaggtccatgaaagagtgccatggagttgaggcaagtaaagaacattatggttgtgtcgtcgatctcttgtgccgttcagggaagatggtagaagcttatgagtttgtgaagtccattcctttagaagtcactgaatccattattggagctttgctgaacgggtgtaaagtccatggaagaagagatcttgctaaattgatggctcaggatattctgaaaatggagttaaagagacctggaggttttgtaacactctcaaatatctatgctgctgatggagaatgggaagaagttgagtatgtaaggaaggtgatgaagcagaggaaggtccttaagaaacctggatttagttcactcgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

153

Amino Acids

16.91

Weight (kDa)

6.9

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43470
malus_domestica	MD11G1024300.v1.1
prunus_persica	Prupe.6G020300_v2.0.a1
pyrus_communis	pycom11g01920
rosa_chinensis	RchiOBHm_Chr5g0077881
rosa_laevigata	RLG00000036722
rosa_multiflora	Rmu_co8015760.1_g000001 Rmu_sc0031428.1_g000002 Rmu_ssc0000186.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004300
rosa_rugosa	Rorug05G0456900 Rorug05G0456900
rosa_samantha	Rh5AG511300 Rh5BG534000 Rh5CG557500 Rh5DG545500
rosa_wichuraiana	Rw5G047450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	48
AflII	CTTAAG	1 cut(s)	431
AjnI	CCWGG	2 cut(s)	334, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	2 cut(s)	194, 248
AluI	AGCT	2 cut(s)	194, 248
Alw26I	GTCTC	1 cut(s)	325
ApeKI	GCWGC	2 cut(s)	60, 368
AspS9I	GGNCC	2 cut(s)	102, 427
AsuHPI	GGTGA	1 cut(s)	421
AvaII	GGWCC	2 cut(s)	102, 427
BbvI	GCAGC	2 cut(s)	72, 355
BccI	CCATC	3 cut(s)	178, 292, 368
BceAI	ACGGC	1 cut(s)	156
BciT130I	CCWGG	2 cut(s)	336, 441
BcoDI	GTCTC	1 cut(s)	325
BfmI	CTRYAG	1 cut(s)	75
BfrI	CTTAAG	1 cut(s)	431
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	2 cut(s)	61, 369
BlsI	GCNGC	2 cut(s)	62, 370
Bme1390I	CCNGG	2 cut(s)	336, 441
Bme18I	GGWCC	2 cut(s)	102, 427
BmgT120I	GGNCC	2 cut(s)	102, 427
BmrFI	CCNGG	2 cut(s)	336, 441
BpmI	CTGGAG	1 cut(s)	357
Bpu10I	CCTNAGC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	118, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
BseBI	CCWGG	2 cut(s)	336, 441
BseDI	CCNNGG	2 cut(s)	118, 271
BseMII	CTCAG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	72, 355
BsmAI	GTCTC	1 cut(s)	325
Bso31I	GGTCTC	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	160, 283
Bsp19I	CCATGG	2 cut(s)	118, 271
BspCNI	CTCAG	1 cut(s)	316
BspTI	CTTAAG	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	118, 271
BssMI	GATC	2 cut(s)	160, 283
BssT1I	CCWWGG	2 cut(s)	118, 271
Bst2UI	CCWGG	2 cut(s)	336, 441
Bst6I	CTCTTC	1 cut(s)	274
BstAFI	CTTAAG	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	2 cut(s)	118, 271
BstKTI	GATC	2 cut(s)	163, 286
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	2 cut(s)	160, 283
BstNI	CCWGG	2 cut(s)	336, 441
BstNSI	RCATGY	1 cut(s)	60
BstSCI	CCNGG	2 cut(s)	334, 439
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	72, 355
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BtgI	CCRYGG	2 cut(s)	118, 271
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	102, 427
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	4 cut(s)	57, 106, 119, 272
CviJI	RGCY	5 cut(s)	23, 63, 194, 248, 302
CviKI_1	RGCY	5 cut(s)	23, 63, 194, 248, 302
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	2 cut(s)	162, 285
DpnII	GATC	2 cut(s)	160, 283
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	118, 271
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	102, 427
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	334, 439
EcoT14I	CCWWGG	2 cut(s)	118, 271
ErhI	CCWWGG	2 cut(s)	118, 271
FaeI	CATG	4 cut(s)	60, 109, 122, 275
FaiI	YATR	9 cut(s)	58, 66, 107, 120, 147, 198, 273, 366, 399
FatI	CATG	4 cut(s)	56, 105, 118, 271
Fnu4HI	GCNGC	2 cut(s)	61, 369
Fsp4HI	GCNGC	2 cut(s)	61, 369
GluI	GCNGC	2 cut(s)	61, 369
GsuI	CTGGAG	1 cut(s)	357
Hin1II	CATG	4 cut(s)	60, 109, 122, 275
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	1 cut(s)	233
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	2 cut(s)	47, 452
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	2 cut(s)	47, 452
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	400, 418
HpyCH4V	TGCA	3 cut(s)	4, 56, 60
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	4 cut(s)	60, 109, 122, 275
Kzo9I	GATC	2 cut(s)	160, 283
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	8 cut(s)	5, 85, 162, 290, 321, 348, 426, 453
Lsp1109I	GCAGC	2 cut(s)	72, 355
MaeIII	GTNAC	3 cut(s)	31, 226, 346
MalI	GATC	2 cut(s)	162, 285
MboI	GATC	2 cut(s)	160, 283
MboII	GAAGA	4 cut(s)	193, 288, 291, 398
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	1 cut(s)	293
MnlI	CCTC	4 cut(s)	5, 121, 332, 414
MseI	TTAA	3 cut(s)	326, 432, 460
MspCI	CTTAAG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	336, 441
MvaI	CCWGG	2 cut(s)	336, 441
NcoI	CCATGG	2 cut(s)	118, 271
NdeII	GATC	2 cut(s)	160, 283
NlaIII	CATG	4 cut(s)	60, 109, 122, 275
NmuCI	GTSAC	2 cut(s)	31, 226
NspI	RCATGY	1 cut(s)	60
PaeI	GCATGC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	62, 370
PpuMI	RGGWCCY	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	334, 439
PspGI	CCWGG	2 cut(s)	334, 439
PspPI	GGNCC	2 cut(s)	102, 427
PspPPI	RGGWCCY	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	326, 432, 460
SatI	GCNGC	2 cut(s)	61, 369
Sau3AI	GATC	2 cut(s)	160, 283
Sau96I	GGNCC	2 cut(s)	102, 427
ScrFI	CCNGG	2 cut(s)	336, 441
SetI	ASST	8 cut(s)	104, 196, 250, 337, 343, 411, 429, 442
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	2 cut(s)	102, 427
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SphI	GCATGC	1 cut(s)	60
Sse9I	AATT	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	334, 439
StyI	CCWWGG	2 cut(s)	118, 271
TaqI	TCGA	2 cut(s)	159, 456
TasI	AATT	1 cut(s)	293
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	3 cut(s)	326, 432, 460
Tru9I	TTAA	3 cut(s)	326, 432, 460
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	2 cut(s)	31, 226
TseI	GCWGC	2 cut(s)	60, 368
Tsp45I	GTSAC	2 cut(s)	31, 226
TspDTI	ATGAA	3 cut(s)	42, 122, 428
TspRI	CASTG	1 cut(s)	235
Vha464I	CTTAAG	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	102, 427
XceI	RCATGY	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.