Prupe.6G020300_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
1617628 .. 1620360
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G020300.1

Sequence Viewer

Length: 1620 bp
ATGAAAAGGGCACCTTTTTGGTTGTTCAAGTTGTCCCCAGACCATTTGGCTTTGTGCTTGCAAAAATGTCTGAAAGCGAAGGCTCTGAGACAAGGAAAGCAAGTTCATGCAATGTTGTTAACAAGTCGGGTTGACATGAACTTGTTATCTTTGAGCTCAAAACTTGTTGGGACGTATGCTAGTTGTGGGGATATGGGTTCTGCAAAGCTTGTGTTTGATAAAATTCCCAAGCCAAATGTTTTTGCATTAAATTGGATGGTGTTGGCCTCTGCCTTTAATGGGCATTATGATGAAGCAATTAGGTACTTTTATTTGATGCAAGAATTGGGAGTTGTTGGCAATAAGTTCACGTTTCCAGTCATGCTTAAAGTCTGTGTTGGCTTGATGGATTTGAATAAGGGAAAAGAAGTTCATGCTGTGGTAAATAAACTTGGTTTTGCAAAGGATGTCTCTTTGGCAAATGCCCTGATAGACATGTATTGTAAATGTGGAAGCGTATGTCATGCTCACCGCGTGTTTGACAGAATGCTCGACAGAGATGTTGCTTCTTGGACATCAATGATATGCGGGTATTTTAATGTAGCAAAGACTGATCAAGCCCTTCTTTTGTTCGAGAGGATGAAGTTGGATGAATTGGAACCAAATTATTTCACATGGAATGCAATGATAGCTGGGTTTGCTCGGTGTGGAGATACAGAGCGAGCATATGCACTTCTCTCTAGAATGACTGAAGGAGGACTGGTTCCAGATTTGGTTACTTGGAATGCAATAATTGCTGGTTTTTCCCAAAGCCAGCATGCTGGTGAAGCATTTAAAGTGTTCCGTGTCATGTTGCTGTCTGGAACTAAACCGAACCTTGTGACAATCACAGGGTTGCTCCCAGCTTGTGGGTTGATTGGTTCAATTCGAAGAGGGAGAGAAATTCATGGATTGATCTATAGGATAGGCTTTGACATAAATGTCTTTGTTGCTAGTGCTCTTATTGATATGTACTCGAAATGTGGCAGTGTGGAAAAAGCTCGAAGTGTATTTGACCGGATTCCTGTAAACCACGTTGCATCATGGAACGCATTGATTGGATGTTATGGCAAGTATGGTATGGTTGATTCCTCCATAGAGCTTTTTGAAAGAATGCAAGAGGGAGGAGTGCAGGCAAATGAAGTGACTTTGACATGTGTACTTTCTGCATGCAGCCATAGTGGTTATGTGGAAAAAGGCTTAAAGATTTTCCGGTCCATGAAAGGGAGTCATGGAGTTGAGGCAAGTAAAGAACATTACGCTTGTGTTGTTGATCTCTTGTGCCGGTCAGGAAAAATGGTAGAAGCTTACGAATTGGTCAGGGAAATGCCTGTTGAGGTCACCGAATCCATTGTTGGCGCCTTTTTCAACGGGTGTAAAGTCCATGGAAGAAGAGATCTTGCAAAGATGATGGCTGAAGCTATTCTAAAAATGGAGTTAAAGAGACCTGGAGGTTTTGTGACACTTTCAAATATCTATGCTGCTGATGGAGAATGGGAAGAGGTTGAGAAAGTAAGGAAGGTGATGAAGCAGAGGAAGGTCCTCAAGAAACCTGGATCTAGTTGGCTTGATAAAGGGATGGCTTTGCAGGAGTGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

540

Amino Acids

60.01

Weight (kDa)

9.02

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014707)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 959
AccB1I GGYRCC 2 cut(s) 10, 1376
AccB7I CCANNNNNTGG 1 cut(s) 887
AccII CGCG 1 cut(s) 513
AciI CCGC 2 cut(s) 511, 567
AclWI GGATC 1 cut(s) 1582
AcsI RAATTY 2 cut(s) 222, 921
AcuI CTGAAG 2 cut(s) 750, 1455
AcyI GRCGYC 1 cut(s) 1377
AdeI CACNNNGTG 1 cut(s) 514
AfaI GTAC 3 cut(s) 305, 992, 1179
AfiI CCNNNNNNNGG 3 cut(s) 279, 887, 1242
AflIII ACRYGT 2 cut(s) 474, 1172
AgsI TTSAA 6 cut(s) 28, 394, 903, 1127, 1387, 1488
AjnI CCWGG 2 cut(s) 1465, 1570
AjuI GAANNNNNNNTTGG 2 cut(s) 1356, 1388
AloI GAACNNNNNNTCC 6 cut(s) 87, 119, 393, 425, 726, 758
AluBI AGCT 8 cut(s) 156, 208, 671, 884, 1019, 1120, 1325, 1439
AluI AGCT 8 cut(s) 156, 208, 671, 884, 1019, 1120, 1325, 1439
Alw21I GWGCWC 2 cut(s) 158, 979
Alw26I GTCTC 3 cut(s) 82, 454, 1456
AlwI GGATC 1 cut(s) 1582
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 2 cut(s) 1191, 1499
ApoI RAATTY 2 cut(s) 222, 921
Asp700I GAANNNNTTC 1 cut(s) 1440
AspLEI GCGC 1 cut(s) 1379
AspS9I GGNCC 2 cut(s) 1233, 1558
AsuHPI GGTGA 4 cut(s) 500, 815, 1351, 1552
AsuII TTCGAA 1 cut(s) 907
AvaII GGWCC 2 cut(s) 1233, 1558
BaeGI GKGCMC 1 cut(s) 13
BanI GGYRCC 2 cut(s) 10, 1376
BanII GRGCYC 1 cut(s) 158
Bbv12I GWGCWC 2 cut(s) 158, 979
BbvI GCAGC 2 cut(s) 1203, 1486
BccI CCATC 5 cut(s) 250, 379, 1423, 1499, 1591
BciT130I CCWGG 2 cut(s) 1467, 1572
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 3 cut(s) 82, 454, 1456
BfaI CTAG 4 cut(s) 180, 720, 972, 1578
BfmI CTRYAG 1 cut(s) 937
BfoI RGCGCY 1 cut(s) 1380
BglII AGATCT 1 cut(s) 1414
BisI GCNGC 2 cut(s) 1192, 1500
BlsI GCNGC 2 cut(s) 1193, 1501
Bme1390I CCNGG 2 cut(s) 1467, 1572
Bme18I GGWCC 2 cut(s) 1233, 1558
BmgT120I GGNCC 2 cut(s) 1233, 1558
BmiI GGNNCC 4 cut(s) 12, 639, 744, 1378
BmrFI CCNGG 2 cut(s) 1467, 1572
BmsI GCATC 2 cut(s) 306, 1067
BpmI CTGGAG 1 cut(s) 1488
Bpu14I TTCGAA 1 cut(s) 907
BpuEI CTTGAG 1 cut(s) 1547
BsaHI GRCGYC 1 cut(s) 1377
BsaI GGTCTC 1 cut(s) 1456
BsaJI CCNNGG 1 cut(s) 1402
BsaWI WCCGGW 2 cut(s) 1035, 1230
BsaXI ACNNNNNCTCC 5 cut(s) 726, 756, 1461, 1491, 1601
Bsc4I CCNNNNNNNGG 3 cut(s) 279, 887, 1242
Bse118I RCCGGY 1 cut(s) 1302
Bse1I ACTGG 2 cut(s) 356, 744
Bse3DI GCAATG 2 cut(s) 117, 669
BseBI CCWGG 2 cut(s) 1467, 1572
BseDI CCNNGG 1 cut(s) 1402
BseGI GGATG 6 cut(s) 261, 451, 624, 634, 1085, 1602
BseLI CCNNNNNNNGG 3 cut(s) 279, 887, 1242
BseMI GCAATG 2 cut(s) 117, 669
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 2 cut(s) 356, 744
BseRI GAGGAG 1 cut(s) 1158
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 2 cut(s) 1203, 1486
BseYI CCCAGC 2 cut(s) 671, 880
BsgI GTGCAG 1 cut(s) 1169
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 1 cut(s) 266
BshNI GGYRCC 2 cut(s) 10, 1376
BsiHKAI GWGCWC 2 cut(s) 158, 979
BsiSI CCGG 3 cut(s) 1036, 1231, 1303
BslFI GGGAC 2 cut(s) 19, 184
BslI CCNNNNNNNGG 3 cut(s) 279, 887, 1242
BsmAI GTCTC 3 cut(s) 82, 454, 1456
BsmFI GGGAC 2 cut(s) 19, 184
BsmI GAATGC 4 cut(s) 531, 664, 769, 1137
BsnI GGCC 1 cut(s) 266
Bso31I GGTCTC 1 cut(s) 1456
Bsp119I TTCGAA 1 cut(s) 907
Bsp1286I GDGCHC 3 cut(s) 13, 158, 979
Bsp143I GATC 5 cut(s) 592, 933, 1291, 1414, 1574
Bsp19I CCATGG 1 cut(s) 1402
BspACI CCGC 2 cut(s) 511, 567
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 4 cut(s) 12, 639, 744, 1378
BspPI GGATC 1 cut(s) 1582
BspT104I TTCGAA 1 cut(s) 907
BspT107I GGYRCC 2 cut(s) 10, 1376
BspTNI GGTCTC 1 cut(s) 1456
BsrDI GCAATG 2 cut(s) 117, 669
BsrFI RCCGGY 1 cut(s) 1302
BsrI ACTGG 2 cut(s) 356, 744
BssAI RCCGGY 1 cut(s) 1302
BssECI CCNNGG 1 cut(s) 1402
BssMI GATC 5 cut(s) 592, 933, 1291, 1414, 1574
BssNI GRCGYC 1 cut(s) 1377
BssT1I CCWWGG 1 cut(s) 1402
Bst2UI CCWGG 2 cut(s) 1467, 1572
Bst6I CTCTTC 3 cut(s) 904, 1405, 1512
BstACI GRCGYC 1 cut(s) 1377
BstAPI GCANNNNNTGC 1 cut(s) 773
BstBI TTCGAA 1 cut(s) 907
BstC8I GCNNGC 6 cut(s) 59, 702, 794, 798, 1152, 1189
BstDEI CTNAG 1 cut(s) 86
BstDSI CCRYGG 1 cut(s) 1402
BstEII GGTNACC 1 cut(s) 1357
BstF5I GGATG 6 cut(s) 261, 451, 624, 634, 1085, 1602
BstFNI CGCG 1 cut(s) 513
BstH2I RGCGCY 1 cut(s) 1380
BstHHI GCGC 1 cut(s) 1379
BstKTI GATC 5 cut(s) 595, 936, 1294, 1417, 1577
BstMAI GTCTC 3 cut(s) 82, 454, 1456
BstMBI GATC 5 cut(s) 592, 933, 1291, 1414, 1574
BstMWI GCNNNNNNNGC 4 cut(s) 668, 677, 773, 806
BstNI CCWGG 2 cut(s) 1467, 1572
BstNSI RCATGY 4 cut(s) 478, 800, 1176, 1191
BstPI GGTNACC 1 cut(s) 1357
BstSCI CCNGG 2 cut(s) 1465, 1570
BstSFI CTRYAG 1 cut(s) 937
BstSLI GKGCMC 1 cut(s) 13
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 2 cut(s) 1203, 1486
BstX2I RGATCY 2 cut(s) 1414, 1574
BstXI CCANNNNNNTGG 1 cut(s) 800
BstYI RGATCY 2 cut(s) 1414, 1574
BsuRI GGCC 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 1402
BtsCI GGATG 6 cut(s) 261, 451, 624, 634, 1085, 1602
BtsI GCAGTG 1 cut(s) 1012
BtsIMutI CAGTG 1 cut(s) 1012
Cac8I GCNNGC 6 cut(s) 59, 702, 794, 798, 1152, 1189
CfoI GCGC 1 cut(s) 1379
Cfr10I RCCGGY 1 cut(s) 1302
Cfr13I GGNCC 2 cut(s) 1233, 1558
Csp6I GTAC 3 cut(s) 304, 991, 1178
CviQI GTAC 3 cut(s) 304, 991, 1178
DdeI CTNAG 1 cut(s) 86
DinI GGCGCC 1 cut(s) 1378
DpnI GATC 5 cut(s) 594, 935, 1293, 1416, 1576
DpnII GATC 5 cut(s) 592, 933, 1291, 1414, 1574
DraI TTTAAA 1 cut(s) 814
DraIII CACNNNGTG 1 cut(s) 514
DrdI GACNNNNNNGTC 1 cut(s) 959
DseDI GACNNNNNNGTC 1 cut(s) 959
Eam1104I CTCTTC 3 cut(s) 904, 1405, 1512
EarI CTCTTC 3 cut(s) 904, 1405, 1512
Ecl136II GAGCTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 1402
Eco24I GRGCYC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 1456
Eco47I GGWCC 2 cut(s) 1233, 1558
Eco53kI GAGCTC 1 cut(s) 156
Eco57I CTGAAG 2 cut(s) 750, 1455
Eco91I GGTNACC 1 cut(s) 1357
EcoICRI GAGCTC 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 1558
EcoO65I GGTNACC 1 cut(s) 1357
EcoRII CCWGG 2 cut(s) 1465, 1570
EcoT14I CCWWGG 1 cut(s) 1402
EcoT38I GRGCYC 1 cut(s) 158
EgeI GGCGCC 1 cut(s) 1378
EheI GGCGCC 1 cut(s) 1378
ErhI CCWWGG 1 cut(s) 1402
FalI AAGNNNNNCTT 3 cut(s) 30, 588, 620
FaqI GGGAC 2 cut(s) 19, 184
FauI CCCGC 1 cut(s) 560
FauNDI CATATG 1 cut(s) 706
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 2 cut(s) 1192, 1500
FokI GGATG 6 cut(s) 268, 458, 631, 641, 1092, 1609
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 1192, 1500
FspBI CTAG 4 cut(s) 180, 720, 972, 1578
GlaI GCGC 1 cut(s) 1378
GluI GCNGC 2 cut(s) 1192, 1500
GsaI CCCAGC 2 cut(s) 675, 884
GsuI CTGGAG 1 cut(s) 1488
HaeII RGCGCY 1 cut(s) 1380
HaeIII GGCC 1 cut(s) 266
HapII CCGG 3 cut(s) 1036, 1231, 1303
HhaI GCGC 1 cut(s) 1379
Hin1I GRCGYC 1 cut(s) 1377
Hin6I GCGC 1 cut(s) 1377
HinP1I GCGC 1 cut(s) 1377
HincII GTYRAC 2 cut(s) 120, 133
HindII GTYRAC 2 cut(s) 120, 133
HindIII AAGCTT 2 cut(s) 206, 1323
HinfI GANTC 4 cut(s) 1039, 1106, 1246, 1364
HpaI GTTAAC 1 cut(s) 120
HpaII CCGG 3 cut(s) 1036, 1231, 1303
HphI GGTGA 4 cut(s) 500, 815, 1351, 1552
Hpy166II GTNNAC 5 cut(s) 120, 133, 348, 1048, 1178
Hpy188I TCNGA 2 cut(s) 72, 87
Hpy188III TCNNGA 6 cut(s) 613, 720, 746, 840, 1308, 1564
Hpy8I GTNNAC 5 cut(s) 120, 133, 348, 1048, 1178
HpyAV CCTTC 5 cut(s) 73, 611, 725, 1531, 1549
HpyCH4IV ACGT 3 cut(s) 173, 350, 1053
HpyF10VI GCNNNNNNNGC 4 cut(s) 668, 677, 773, 806
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 3 cut(s) 173, 350, 1053
Hsp92I GRCGYC 1 cut(s) 1377
HspAI GCGC 1 cut(s) 1377
KasI GGCGCC 1 cut(s) 1376
Ksp22I TGATCA 1 cut(s) 592
KspAI GTTAAC 1 cut(s) 120
Kzo9I GATC 5 cut(s) 592, 933, 1291, 1414, 1574
LmnI GCTCC 1 cut(s) 882
Lsp1109I GCAGC 2 cut(s) 1203, 1486
LweI GCATC 2 cut(s) 306, 1067
MaeI CTAG 4 cut(s) 180, 720, 972, 1578
MaeII ACGT 3 cut(s) 173, 350, 1053
MaeIII GTNAC 5 cut(s) 754, 859, 1162, 1357, 1477
MalI GATC 5 cut(s) 594, 935, 1293, 1416, 1576
MboI GATC 5 cut(s) 592, 933, 1291, 1414, 1574
MboII GAAGA 4 cut(s) 921, 1419, 1422, 1529
MflI RGATCY 2 cut(s) 1414, 1574
MhlI GDGCHC 3 cut(s) 13, 158, 979
Mly113I GGCGCC 1 cut(s) 1377
MlyI GAGTC 1 cut(s) 1255
MmeI TCCRAC 1 cut(s) 606
MroXI GAANNNNTTC 1 cut(s) 1440
MseI TTAA 8 cut(s) 119, 248, 276, 366, 576, 813, 1220, 1457
MslI CAYNNNNRTG 2 cut(s) 288, 801
MspI CCGG 3 cut(s) 1036, 1231, 1303
MspR9I CCNGG 2 cut(s) 1467, 1572
Mva1269I GAATGC 4 cut(s) 531, 664, 769, 1137
MvaI CCWGG 2 cut(s) 1467, 1572
MvnI CGCG 1 cut(s) 513
MwoI GCNNNNNNNGC 4 cut(s) 668, 677, 773, 806
NarI GGCGCC 1 cut(s) 1377
NcoI CCATGG 1 cut(s) 1402
NdeI CATATG 1 cut(s) 706
NdeII GATC 5 cut(s) 592, 933, 1291, 1414, 1574
NlaIV GGNNCC 4 cut(s) 12, 639, 744, 1378
NmuCI GTSAC 4 cut(s) 859, 1162, 1357, 1477
NspI RCATGY 4 cut(s) 478, 800, 1176, 1191
NspV TTCGAA 1 cut(s) 907
PaeI GCATGC 2 cut(s) 800, 1191
PciI ACATGT 2 cut(s) 474, 1172
PctI GAATGC 4 cut(s) 531, 664, 769, 1137
PdmI GAANNNNTTC 1 cut(s) 1440
PfeI GAWTC 3 cut(s) 1039, 1106, 1364
PflMI CCANNNNNTGG 1 cut(s) 887
PkrI GCNGC 2 cut(s) 1193, 1501
PleI GAGTC 1 cut(s) 1254
PluTI GGCGCC 1 cut(s) 1380
PpsI GAGTC 1 cut(s) 1254
PpuMI RGGWCCY 1 cut(s) 1558
PscI ACATGT 2 cut(s) 474, 1172
Psp124BI GAGCTC 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 1558
Psp6I CCWGG 2 cut(s) 1465, 1570
PspEI GGTNACC 1 cut(s) 1357
PspFI CCCAGC 2 cut(s) 671, 880
PspGI CCWGG 2 cut(s) 1465, 1570
PspN4I GGNNCC 4 cut(s) 12, 639, 744, 1378
PspPI GGNCC 2 cut(s) 1233, 1558
PspPPI RGGWCCY 1 cut(s) 1558
PsuI RGATCY 2 cut(s) 1414, 1574
RsaI GTAC 3 cut(s) 305, 992, 1179
RsaNI GTAC 3 cut(s) 304, 991, 1178
RseI CAYNNNNRTG 2 cut(s) 288, 801
SacI GAGCTC 1 cut(s) 158
SaqAI TTAA 8 cut(s) 119, 248, 276, 366, 576, 813, 1220, 1457
SatI GCNGC 2 cut(s) 1192, 1500
Sau3AI GATC 5 cut(s) 592, 933, 1291, 1414, 1574
Sau96I GGNCC 2 cut(s) 1233, 1558
SchI GAGTC 1 cut(s) 1255
ScrFI CCNGG 2 cut(s) 1467, 1572
SduI GDGCHC 3 cut(s) 13, 158, 979
SfaNI GCATC 2 cut(s) 306, 1067
SfcI CTRYAG 1 cut(s) 937
SfoI GGCGCC 1 cut(s) 1378
SfuI TTCGAA 1 cut(s) 907
SinI GGWCC 2 cut(s) 1233, 1558
SmiMI CAYNNNNRTG 2 cut(s) 288, 801
SmlI CTYRAG 1 cut(s) 1562
SmoI CTYRAG 1 cut(s) 1562
SphI GCATGC 2 cut(s) 800, 1191
SsiI CCGC 2 cut(s) 511, 567
SspDI GGCGCC 1 cut(s) 1376
SspMI CTAG 4 cut(s) 180, 720, 972, 1578
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 1465, 1570
StyI CCWWGG 1 cut(s) 1402
TaiI ACGT 3 cut(s) 176, 353, 1056
TaqI TCGA 5 cut(s) 531, 612, 907, 995, 1021
TatI WGTACW 2 cut(s) 990, 1177
TfiI GAWTC 3 cut(s) 1039, 1106, 1364
Tru1I TTAA 8 cut(s) 119, 248, 276, 366, 576, 813, 1220, 1457
Tru9I TTAA 8 cut(s) 119, 248, 276, 366, 576, 813, 1220, 1457
TscAI CASTG 1 cut(s) 1012
TseFI GTSAC 4 cut(s) 859, 1162, 1357, 1477
TseI GCWGC 2 cut(s) 1191, 1499
Tsp45I GTSAC 4 cut(s) 859, 1162, 1357, 1477
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 1 cut(s) 1012
Van91I CCANNNNNTGG 1 cut(s) 887
VpaK11BI GGWCC 2 cut(s) 1233, 1558
XapI RAATTY 2 cut(s) 222, 921
XbaI TCTAGA 1 cut(s) 719
XceI RCATGY 4 cut(s) 478, 800, 1176, 1191
XmnI GAANNNNTTC 1 cut(s) 1440
XspI CTAG 4 cut(s) 180, 720, 972, 1578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.