FvH4_4g01040

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016813
Physical Location & Seq
Reverse (-)
997991 .. 999962
1972 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01040.t1

Sequence Viewer

Length: 726 bp
ATGGGGTTCCGATTACCACAGTTCATGAAGAGTGGCGACGTAGAGGCCCAAAAAGATGGCCAACTTTACCCTAATCAAATGGAGACGCCTCAGCTCCGTTGGGCCTTCATCCGCAAGGTTTACAGCATTGTCCTCTTCCAGCTGGCTCTCACCGTCGCAGTTGCCGCCGTCGTCGTCACCGTCGAGGACATTCCCAAATTCTTTAGAACCGGTCCCGGTTTAGGAACCCTAGTGGTCATCATTATCCTTACTGTAGCCATTGCTATTTCGTTGTGGTGGTTGCACAACAAGCATCCTTGGAATTATGTGCTGCTTATTTTGTTTACCATTTTTAAGGCGATTACGATTGGGTTTTGTTGTGCGTATAAAGAAGGAAAGATTGTTTTGCTGGCCGTGATTCTGACGGCGACGGTGTTTCTTGCCCTGACTCTATACACATTCTGGGCAGTCAAAAGAGGAGCAGATTTCTCCTTCATGGGGCCATTTTTGTTTGCTGCATGTATCATGCTTTTTACATTTGCCCTCATTCAGTTTATCGTACCTATGGGGCCTTGGTGGAAGTGTACACTTGCAGCCTTGGGAGCGATTCTGGCCTGTGCGTTTATTGTATACGACACAGACAACATCATCAAGCGCCTGAGCTACGACGAGTACATCTTGGGAGCTATCTCCATATACGCCGATATTGTCCTGCTTTTTCTTTCTCTTCTAGGGTTTGACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

242

Amino Acids

27.11

Weight (kDa)

8.56

Isoelectric Point (pI)

28.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 35 - 238 3.9e-43 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016813)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01040
malus_domestica MD13G1198700.v1.1
prunus_persica Prupe.1G020400_v2.0.a1
pyrus_communis pycom13g17250
rosa_chinensis RchiOBHm_Chr4g0387621
rosa_laevigata RLG00000010106
rosa_roxburghii Rroxscaffold_5G00334300
rosa_rugosa Rorug03G0311500 Rorug03G0311600
rosa_samantha Rh4AG017200 Rh4BG012000 Rh4CG018400 Rh4DG013000
rosa_wichuraiana Rw4G001100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 609
AciI CCGC 2 cut(s) 112, 165
AcoI YGGCCR 2 cut(s) 58, 390
AcsI RAATTY 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 3 cut(s) 540, 565, 653
AfiI CCNNNNNNNGG 2 cut(s) 221, 477
AgeI ACCGGT 1 cut(s) 209
AluBI AGCT 4 cut(s) 94, 142, 642, 665
AluI AGCT 4 cut(s) 94, 142, 642, 665
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 7 cut(s) 45, 58, 102, 390, 479, 548, 591
ApeKI GCWGC 3 cut(s) 310, 494, 572
ApoI RAATTY 1 cut(s) 197
AsiGI ACCGGT 1 cut(s) 209
AspLEI GCGC 1 cut(s) 636
AspS9I GGNCC 5 cut(s) 46, 102, 212, 479, 548
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 142, 169
AvaII GGWCC 1 cut(s) 212
BalI TGGCCA 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 3 cut(s) 297, 481, 584
BccI CCATC 1 cut(s) 50
BceAI ACGGC 3 cut(s) 152, 377, 420
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 230, 710
BfmI CTRYAG 1 cut(s) 252
BfoI RGCGCY 1 cut(s) 637
BisI GCNGC 4 cut(s) 165, 311, 495, 573
BlsI GCNGC 4 cut(s) 166, 312, 496, 574
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 5 cut(s) 46, 102, 212, 479, 548
BmiI GGNNCC 5 cut(s) 8, 214, 226, 480, 549
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 301
Bpu10I CCTNAGC 2 cut(s) 90, 638
BpuMI CCSGG 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 296, 551, 576
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 477
Bse118I RCCGGY 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 296, 551, 576
BseGI GGATG 2 cut(s) 108, 292
BseLI CCNNNNNNNGG 2 cut(s) 221, 477
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 2 cut(s) 104, 629
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 3 cut(s) 297, 481, 584
BshFI GGCC 7 cut(s) 47, 60, 104, 392, 481, 550, 593
BshTI ACCGGT 1 cut(s) 209
BsiSI CCGG 2 cut(s) 210, 216
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 2 cut(s) 221, 477
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 7 cut(s) 47, 60, 104, 392, 481, 550, 593
Bsp1407I TGTACA 1 cut(s) 563
BspACI CCGC 2 cut(s) 112, 165
BspANI GGCC 7 cut(s) 47, 60, 104, 392, 481, 550, 593
BspCNI CTCAG 2 cut(s) 103, 630
BspHI TCATGA 1 cut(s) 24
BspLI GGNNCC 5 cut(s) 8, 214, 226, 480, 549
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 563
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 3 cut(s) 296, 551, 576
BssNAI GTATAC 1 cut(s) 610
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 3 cut(s) 296, 551, 576
Bst1107I GTATAC 1 cut(s) 610
Bst4CI ACNGT 5 cut(s) 21, 154, 181, 253, 412
Bst6I CTCTTC 3 cut(s) 23, 140, 711
BstACI GRCGYC 1 cut(s) 86
BstAUI TGTACA 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 144, 390
BstDEI CTNAG 2 cut(s) 90, 638
BstF5I GGATG 2 cut(s) 108, 292
BstH2I RGCGCY 1 cut(s) 637
BstHHI GCGC 1 cut(s) 636
BstMAI GTCTC 1 cut(s) 77
BstMWI GCNNNNNNNGC 4 cut(s) 164, 289, 581, 590
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 3 cut(s) 297, 481, 584
BstXI CCANNNNNNTGG 1 cut(s) 56
BstZ17I GTATAC 1 cut(s) 610
BsuRI GGCC 7 cut(s) 47, 60, 104, 392, 481, 550, 593
BtsCI GGATG 2 cut(s) 108, 292
Cac8I GCNNGC 2 cut(s) 144, 390
CciI TCATGA 1 cut(s) 24
CfoI GCGC 1 cut(s) 636
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 5 cut(s) 46, 102, 212, 479, 548
CseI GACGC 1 cut(s) 94
Csp6I GTAC 3 cut(s) 539, 564, 652
CspAI ACCGGT 1 cut(s) 209
CviAII CATG 4 cut(s) 25, 475, 498, 505
CviQI GTAC 3 cut(s) 539, 564, 652
DdeI CTNAG 2 cut(s) 90, 638
EaeI YGGCCR 2 cut(s) 58, 390
Eam1104I CTCTTC 3 cut(s) 23, 140, 711
EarI CTCTTC 3 cut(s) 23, 140, 711
Eco130I CCWWGG 3 cut(s) 296, 551, 576
Eco47I GGWCC 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 548
EcoT14I CCWWGG 3 cut(s) 296, 551, 576
ErhI CCWWGG 3 cut(s) 296, 551, 576
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 4 cut(s) 28, 478, 501, 508
FaqI GGGAC 1 cut(s) 198
FatI CATG 4 cut(s) 24, 474, 497, 504
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 4 cut(s) 165, 311, 495, 573
FokI GGATG 2 cut(s) 95, 279
Fsp4HI GCNGC 4 cut(s) 165, 311, 495, 573
FspBI CTAG 2 cut(s) 230, 710
GlaI GCGC 1 cut(s) 635
GluI GCNGC 4 cut(s) 165, 311, 495, 573
HaeII RGCGCY 1 cut(s) 637
HaeIII GGCC 7 cut(s) 47, 60, 104, 392, 481, 550, 593
HapII CCGG 2 cut(s) 210, 216
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 636
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 4 cut(s) 28, 478, 501, 508
Hin6I GCGC 1 cut(s) 634
HinP1I GCGC 1 cut(s) 634
HinfI GANTC 3 cut(s) 397, 427, 586
HpaII CCGG 2 cut(s) 210, 216
HphI GGTGA 2 cut(s) 142, 169
Hpy166II GTNNAC 5 cut(s) 121, 324, 564, 566, 610
Hpy188I TCNGA 2 cut(s) 11, 402
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 5 cut(s) 121, 324, 564, 566, 610
Hpy99I CGWCG 7 cut(s) 41, 158, 173, 176, 185, 412, 650
HpyAV CCTTC 3 cut(s) 115, 365, 481
HpyCH4III ACNGT 5 cut(s) 21, 154, 181, 253, 412
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 3 cut(s) 283, 497, 572
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 289, 581, 590
HpyF3I CTNAG 2 cut(s) 90, 638
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 4 cut(s) 28, 478, 501, 508
HspAI GCGC 1 cut(s) 634
LmnI GCTCC 4 cut(s) 99, 458, 581, 662
Lsp1109I GCAGC 3 cut(s) 297, 481, 584
LweI GCATC 1 cut(s) 301
MaeI CTAG 2 cut(s) 230, 710
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 175
MboII GAAGA 3 cut(s) 40, 127, 698
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 2 cut(s) 197, 301
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 1 cut(s) 421
MnlI CCTC 6 cut(s) 37, 99, 143, 178, 449, 533
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
MseI TTAA 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 2 cut(s) 210, 216
MspR9I CCNGG 1 cut(s) 216
MwoI GCNNNNNNNGC 4 cut(s) 164, 289, 581, 590
NciI CCSGG 1 cut(s) 216
NlaIII CATG 4 cut(s) 28, 478, 501, 508
NlaIV GGNNCC 5 cut(s) 8, 214, 226, 480, 549
NmuCI GTSAC 1 cut(s) 175
NspI RCATGY 1 cut(s) 501
PagI TCATGA 1 cut(s) 24
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 180
PfeI GAWTC 2 cut(s) 397, 586
PinAI ACCGGT 1 cut(s) 209
PkrI GCNGC 4 cut(s) 166, 312, 496, 574
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PspN4I GGNNCC 5 cut(s) 8, 214, 226, 480, 549
PspPI GGNCC 5 cut(s) 46, 102, 212, 479, 548
PvuII CAGCTG 1 cut(s) 142
RsaI GTAC 3 cut(s) 540, 565, 653
RsaNI GTAC 3 cut(s) 539, 564, 652
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 4 cut(s) 165, 311, 495, 573
Sau96I GGNCC 5 cut(s) 46, 102, 212, 479, 548
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 1 cut(s) 216
SetI ASST 7 cut(s) 42, 96, 120, 144, 544, 644, 667
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 212
Sse9I AATT 2 cut(s) 197, 301
SsiI CCGC 2 cut(s) 112, 165
SspMI CTAG 2 cut(s) 230, 710
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 3 cut(s) 296, 551, 576
TaaI ACNGT 5 cut(s) 21, 154, 181, 253, 412
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 183
TasI AATT 2 cut(s) 197, 301
TatI WGTACW 2 cut(s) 563, 651
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 2 cut(s) 397, 586
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 3 cut(s) 310, 494, 572
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 4 cut(s) 13, 41, 97, 463
TspGWI ACGGA 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 1 cut(s) 197
XceI RCATGY 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 2 cut(s) 230, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.