Rh4CG018400

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0016813
Physical Location & Seq
Reverse (-)
3694900 .. 3697384
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG018400.1

Sequence Viewer

Length: 552 bp
ATGGGTTTACCACAGTTCATGAAGAGTACCGACGTAGAGGCCCAAAAAAATGGCCAACTTTACCCTAATCAGATGGAGACGCCTCAGCTCCGCTGGGCCTTCATCCGCAAGGTTTACAGCATTATCTGCTGCCAGCTGGCTCTCACCGTCGCAGTCGCCGCCGTCGTGGTCACCGTCAAAGAGATTTCCAAGTTCTTCCATACGTTAGAAGGACTAATCACCTTCGTATGCCTCATTATCCTTACCGTAGCCATTGCTATTTCGTTGTGGTGGTTGCACAACAAGCATCCTTGGAATTATTTGCTGCTCATTTTGTTTACCTTTGCTGAGGCGATTGTGATCGGGGTCTGTTGTTCATATAAACAAGGGAAGGTTATCATGCTGGCTGTGATTCTGACGCTGACGGTGGTTGTTGGCTTAACTGCATACACATTCTGGGCAGTTAAAAGAGGAGCGGATTTCGCCTTCCTTGGACCATTTTTATTCGCTGCATCGCTCATGCTTTTTACTTTTGCCCTCATTCAGGTAATTACACCGGTAGCATTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

183

Amino Acids

20.47

Weight (kDa)

8.96

Isoelectric Point (pI)

25.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 33 - 179 8.2e-23 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016813)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01040
malus_domestica MD13G1198700.v1.1
prunus_persica Prupe.1G020400_v2.0.a1
pyrus_communis pycom13g17250
rosa_chinensis RchiOBHm_Chr4g0387621
rosa_laevigata RLG00000010106
rosa_roxburghii Rroxscaffold_5G00334300
rosa_rugosa Rorug03G0311500 Rorug03G0311600
rosa_samantha Rh4AG017200 Rh4BG012000 Rh4CG018400 Rh4DG013000
rosa_wichuraiana Rw4G001100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 455
AciI CCGC 4 cut(s) 91, 106, 159, 455
AcoI YGGCCR 1 cut(s) 52
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 523
AgeI ACCGGT 1 cut(s) 535
AluBI AGCT 2 cut(s) 88, 136
AluI AGCT 2 cut(s) 88, 136
Alw26I GTCTC 1 cut(s) 71
AoxI GGCC 3 cut(s) 39, 52, 96
ApeKI GCWGC 3 cut(s) 129, 304, 488
AsiGI ACCGGT 1 cut(s) 535
AspS9I GGNCC 3 cut(s) 40, 96, 473
AsuHPI GGTGA 3 cut(s) 136, 163, 211
AvaII GGWCC 1 cut(s) 473
BalI TGGCCA 1 cut(s) 54
BbvCI CCTCAGC 2 cut(s) 84, 327
BbvI GCAGC 3 cut(s) 116, 291, 475
BccI CCATC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 71
BisI GCNGC 4 cut(s) 130, 159, 305, 489
BlsI GCNGC 4 cut(s) 131, 160, 306, 490
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 3 cut(s) 40, 96, 473
BmsI GCATC 2 cut(s) 295, 500
Bpu10I CCTNAGC 2 cut(s) 84, 327
BsaBI GATNNNNATC 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 290, 469
BsaWI WCCGGW 1 cut(s) 535
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse118I RCCGGY 1 cut(s) 535
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 290, 469
BseGI GGATG 2 cut(s) 102, 286
BseJI GATNNNNATC 1 cut(s) 338
BseLI CCNNNNNNNGG 1 cut(s) 523
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 98, 318
BseRI GAGGAG 1 cut(s) 465
BseXI GCAGC 3 cut(s) 116, 291, 475
BseYI CCCAGC 1 cut(s) 93
BshFI GGCC 3 cut(s) 41, 54, 98
BshTI ACCGGT 1 cut(s) 535
BsiSI CCGG 1 cut(s) 536
BslI CCNNNNNNNGG 1 cut(s) 523
BsmAI GTCTC 1 cut(s) 71
BsmBI CGTCTC 1 cut(s) 71
BsnI GGCC 3 cut(s) 41, 54, 98
Bsp143I GATC 1 cut(s) 339
BspACI CCGC 4 cut(s) 91, 106, 159, 455
BspANI GGCC 3 cut(s) 41, 54, 98
BspCNI CTCAG 2 cut(s) 97, 319
BspHI TCATGA 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 535
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 2 cut(s) 290, 469
BssMI GATC 1 cut(s) 339
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 2 cut(s) 290, 469
Bst4CI ACNGT 5 cut(s) 15, 148, 175, 247, 406
Bst6I CTCTTC 1 cut(s) 17
BstACI GRCGYC 1 cut(s) 80
BstAPI GCANNNNNTGC 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 134, 138, 384
BstDEI CTNAG 2 cut(s) 84, 327
BstEII GGTNACC 1 cut(s) 169
BstENI CCTNNNNNAGG 1 cut(s) 521
BstF5I GGATG 2 cut(s) 102, 286
BstKTI GATC 1 cut(s) 342
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 339
BstMWI GCNNNNNNNGC 4 cut(s) 126, 158, 283, 461
BstPI GGTNACC 1 cut(s) 169
BstV1I GCAGC 3 cut(s) 116, 291, 475
BstXI CCANNNNNNTGG 1 cut(s) 50
BsuRI GGCC 3 cut(s) 41, 54, 98
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 2 cut(s) 102, 286
Cac8I GCNNGC 3 cut(s) 134, 138, 384
CciI TCATGA 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 3 cut(s) 40, 96, 473
CseI GACGC 2 cut(s) 88, 406
Csp6I GTAC 1 cut(s) 27
CspAI ACCGGT 1 cut(s) 535
CviAII CATG 3 cut(s) 19, 379, 499
CviJI RGCY 9 cut(s) 41, 54, 88, 98, 136, 140, 251, 386, 417
CviKI_1 RGCY 9 cut(s) 41, 54, 88, 98, 136, 140, 251, 386, 417
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 2 cut(s) 84, 327
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco130I CCWWGG 2 cut(s) 290, 469
Eco47I GGWCC 1 cut(s) 473
Eco91I GGTNACC 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoO65I GGTNACC 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 290, 469
ErhI CCWWGG 2 cut(s) 290, 469
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 3 cut(s) 22, 382, 502
FaiI YATR 8 cut(s) 20, 201, 229, 358, 360, 380, 427, 500
FatI CATG 3 cut(s) 18, 378, 498
Fnu4HI GCNGC 4 cut(s) 130, 159, 305, 489
FokI GGATG 2 cut(s) 89, 273
Fsp4HI GCNGC 4 cut(s) 130, 159, 305, 489
GluI GCNGC 4 cut(s) 130, 159, 305, 489
GsaI CCCAGC 1 cut(s) 97
HaeIII GGCC 3 cut(s) 41, 54, 98
HapII CCGG 1 cut(s) 536
HgaI GACGC 2 cut(s) 88, 406
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 3 cut(s) 22, 382, 502
HinfI GANTC 1 cut(s) 391
HpaII CCGG 1 cut(s) 536
HphI GGTGA 3 cut(s) 136, 163, 211
Hpy166II GTNNAC 3 cut(s) 8, 115, 318
Hpy188I TCNGA 2 cut(s) 72, 396
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 3 cut(s) 8, 115, 318
Hpy99I CGWCG 3 cut(s) 35, 152, 167
HpyAV CCTTC 5 cut(s) 109, 203, 232, 364, 475
HpyCH4III ACNGT 5 cut(s) 15, 148, 175, 247, 406
HpyCH4IV ACGT 2 cut(s) 33, 203
HpyCH4V TGCA 3 cut(s) 277, 425, 491
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 158, 283, 461
HpyF3I CTNAG 2 cut(s) 84, 327
HpySE526I ACGT 2 cut(s) 33, 203
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 22, 382, 502
Kzo9I GATC 1 cut(s) 339
LmnI GCTCC 2 cut(s) 93, 452
LpnPI CCDG 6 cut(s) 79, 122, 146, 368, 421, 509
Lsp1109I GCAGC 3 cut(s) 116, 291, 475
LweI GCATC 2 cut(s) 295, 500
MaeII ACGT 2 cut(s) 33, 203
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 341
MbiI CCGCTC 1 cut(s) 455
MboI GATC 1 cut(s) 339
MboII GAAGA 2 cut(s) 34, 187
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 2 cut(s) 295, 528
MluNI TGGCCA 1 cut(s) 54
MnlI CCTC 6 cut(s) 31, 93, 242, 322, 443, 527
Mox20I TGGCCA 1 cut(s) 54
MscI TGGCCA 1 cut(s) 54
MseI TTAA 2 cut(s) 419, 444
Msp20I TGGCCA 1 cut(s) 54
MspA1I CMGCKG 2 cut(s) 93, 136
MspI CCGG 1 cut(s) 536
MwoI GCNNNNNNNGC 4 cut(s) 126, 158, 283, 461
NdeII GATC 1 cut(s) 339
NlaIII CATG 3 cut(s) 22, 382, 502
NmuCI GTSAC 1 cut(s) 169
PagI TCATGA 1 cut(s) 18
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 171
PfeI GAWTC 1 cut(s) 391
PinAI ACCGGT 1 cut(s) 535
PkrI GCNGC 4 cut(s) 131, 160, 306, 490
PspEI GGTNACC 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 93
PspPI GGNCC 3 cut(s) 40, 96, 473
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 419, 444
SatI GCNGC 4 cut(s) 130, 159, 305, 489
Sau3AI GATC 1 cut(s) 339
Sau96I GGNCC 3 cut(s) 40, 96, 473
SetI ASST 9 cut(s) 36, 90, 114, 138, 206, 224, 323, 375, 528
SfaNI GCATC 2 cut(s) 295, 500
SinI GGWCC 1 cut(s) 473
Sse9I AATT 2 cut(s) 295, 528
SsiI CCGC 4 cut(s) 91, 106, 159, 455
StyI CCWWGG 2 cut(s) 290, 469
TaaI ACNGT 5 cut(s) 15, 148, 175, 247, 406
TaiI ACGT 2 cut(s) 36, 206
TasI AATT 2 cut(s) 295, 528
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 2 cut(s) 419, 444
Tru9I TTAA 2 cut(s) 419, 444
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 3 cut(s) 129, 304, 488
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 4 cut(s) 7, 35, 91, 345
VpaK11BI GGWCC 1 cut(s) 473
XagI CCTNNNNNAGG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.