Prupe.1G020400_v2.0.a1

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016813
Physical Location & Seq
Reverse (-)
1444124 .. 1446149
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G020400.1

Sequence Viewer

Length: 738 bp
ATGGCGCTAAAGTTCATGAAGGGTCGTGACTTGGAGGCAGGCAGAGGTCAAAATGGGGAGCAACAATTGTACCCGAACCAGATGGAGACCCCTCAGCTCCGATGGGCTTTCATCCGCAAGGTCTACATGATCGTCGCCTTTCAGTTGCTTCTCACCGTTGGCATTTCCTACGCCGTCGTTTCGATCCCCGCCATTCCCGAATTCGTCAGATCCTTGGCCGGCACCATCACTTTCATTTGCATTTTTATCGCTGCCATAGCTGTTACGATTGCCTTGTACTATTTCCACAAGAAGCATCCGGTGAATTATGTGCTTCTTATTCTGTTTACGATTTTACTTTCGATTACGGTGGGATTCTGCTGTTCCTTTAGACCAGGGAAAAGTATTCTTCTAGCTGTTATTTTGACGGCTACGGTGGTTGTGAGCCTCACCATATACACATTCTGGGCAGTCAAGAGAGGCCAGGATTTCAGCTTCCTTGGCCCATTTTTGTTTGCTGCAACCCTCATGCTTATGATGTTTGGCCTCATCCAGATATTTTTTCCCTTGGGGCCTCTTTCAAGGATGGTATATTCTGCATTGGGGGCTCTTCTATGTTGTGCTTATATTGTGTACGACACAGACAATCTGATAAAGCGGCTGAGCTACGATGAGTACATATTCGGTGCTCTCTCTATATATATTGATGTTGTCCAACTCTTCCTCTTCCTTCTCTCTTTAATTAGCGGCGGTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

246

Amino Acids

27.5

Weight (kDa)

9.21

Isoelectric Point (pI)

27.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016813)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01040
malus_domestica MD13G1198700.v1.1
prunus_persica Prupe.1G020400_v2.0.a1
pyrus_communis pycom13g17250
rosa_chinensis RchiOBHm_Chr4g0387621
rosa_laevigata RLG00000010106
rosa_roxburghii Rroxscaffold_5G00334300
rosa_rugosa Rorug03G0311500 Rorug03G0311600
rosa_samantha Rh4AG017200 Rh4BG012000 Rh4CG018400 Rh4DG013000
rosa_wichuraiana Rw4G001100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccI GTMKAC 1 cut(s) 123
AciI CCGC 5 cut(s) 115, 189, 637, 726, 729
AclWI GGATC 2 cut(s) 178, 204
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 4 cut(s) 71, 278, 614, 656
AgsI TTSAA 1 cut(s) 561
AjnI CCWGG 2 cut(s) 373, 462
AluBI AGCT 5 cut(s) 97, 260, 395, 474, 645
AluI AGCT 5 cut(s) 97, 260, 395, 474, 645
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 2 cut(s) 178, 204
AoxI GGCC 5 cut(s) 216, 460, 481, 523, 551
ApeKI GCWGC 2 cut(s) 251, 497
ApoI RAATTY 1 cut(s) 200
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 482, 551
AsuHPI GGTGA 3 cut(s) 145, 313, 421
BaeI ACNNNNGTAYC 2 cut(s) 53, 86
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 589
Bbv12I GWGCWC 1 cut(s) 670
BbvCI CCTCAGC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 238, 484
BccI CCATC 4 cut(s) 76, 96, 233, 559
BceAI ACGGC 2 cut(s) 158, 423
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 2 cut(s) 375, 464
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 392
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 4 cut(s) 252, 498, 638, 727
BlpI GCTNAGC 1 cut(s) 641
BlsI GCNGC 4 cut(s) 253, 499, 639, 728
Bme1390I CCNGG 2 cut(s) 375, 464
BmgT120I GGNCC 2 cut(s) 482, 551
BmiI GGNNCC 2 cut(s) 223, 552
BmrFI CCNGG 2 cut(s) 375, 464
BmsI GCATC 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 641
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 213, 374, 478, 546
BsaWI WCCGGW 1 cut(s) 298
Bse118I RCCGGY 1 cut(s) 218
BseBI CCWGG 2 cut(s) 375, 464
BseDI CCNNGG 4 cut(s) 213, 374, 478, 546
BseGI GGATG 4 cut(s) 111, 295, 528, 570
BseMII CTCAG 2 cut(s) 107, 632
BseXI GCAGC 2 cut(s) 238, 484
BshFI GGCC 5 cut(s) 218, 462, 483, 525, 553
BshNI GGYRCC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 670
BsiSI CCGG 2 cut(s) 219, 299
BsmAI GTCTC 1 cut(s) 80
BsnI GGCC 5 cut(s) 218, 462, 483, 525, 553
Bso31I GGTCTC 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 589, 670
Bsp143I GATC 3 cut(s) 129, 183, 209
Bsp1720I GCTNAGC 1 cut(s) 641
BspACI CCGC 5 cut(s) 115, 189, 637, 726, 729
BspANI GGCC 5 cut(s) 218, 462, 483, 525, 553
BspCNI CTCAG 2 cut(s) 106, 633
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 223, 552
BspPI GGATC 2 cut(s) 178, 204
BspQI GCTCTTC 1 cut(s) 594
BspT107I GGYRCC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 4 cut(s) 213, 374, 478, 546
BssMI GATC 3 cut(s) 129, 183, 209
BssT1I CCWWGG 3 cut(s) 213, 478, 546
Bst2UI CCWGG 2 cut(s) 375, 464
Bst4CI ACNGT 3 cut(s) 157, 349, 415
Bst6I CTCTTC 3 cut(s) 594, 704, 710
BstC8I GCNNGC 2 cut(s) 40, 220
BstDEI CTNAG 2 cut(s) 93, 641
BstF5I GGATG 4 cut(s) 111, 295, 528, 570
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 132, 186, 212
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 3 cut(s) 129, 183, 209
BstMWI GCNNNNNNNGC 3 cut(s) 257, 480, 584
BstNI CCWGG 2 cut(s) 375, 464
BstSCI CCNGG 2 cut(s) 373, 462
BstV1I GCAGC 2 cut(s) 238, 484
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 5 cut(s) 218, 462, 483, 525, 553
BtsCI GGATG 4 cut(s) 111, 295, 528, 570
Cac8I GCNNGC 2 cut(s) 40, 220
CciI TCATGA 1 cut(s) 15
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 482, 551
Csp6I GTAC 4 cut(s) 70, 277, 613, 655
CviAII CATG 3 cut(s) 16, 127, 508
CviQI GTAC 4 cut(s) 70, 277, 613, 655
DdeI CTNAG 2 cut(s) 93, 641
DpnI GATC 3 cut(s) 131, 185, 211
DpnII GATC 3 cut(s) 129, 183, 209
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 3 cut(s) 594, 704, 710
EarI CTCTTC 3 cut(s) 594, 704, 710
Eco130I CCWWGG 3 cut(s) 213, 478, 546
Eco24I GRGCYC 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 551
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 373, 462
EcoT14I CCWWGG 3 cut(s) 213, 478, 546
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 3 cut(s) 213, 478, 546
FaeI CATG 3 cut(s) 19, 130, 511
FatI CATG 3 cut(s) 15, 126, 507
FauI CCCGC 1 cut(s) 196
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 4 cut(s) 252, 498, 638, 727
FokI GGATG 4 cut(s) 98, 282, 515, 577
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 4 cut(s) 252, 498, 638, 727
FspBI CTAG 1 cut(s) 392
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 252, 498, 638, 727
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 218, 462, 483, 525, 553
HapII CCGG 2 cut(s) 219, 299
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 19, 130, 511
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 354
HpaII CCGG 2 cut(s) 219, 299
HphI GGTGA 3 cut(s) 145, 313, 421
Hpy166II GTNNAC 3 cut(s) 124, 327, 613
Hpy188I TCNGA 3 cut(s) 101, 209, 630
Hpy188III TCNNGA 5 cut(s) 16, 26, 197, 454, 532
Hpy8I GTNNAC 3 cut(s) 124, 327, 613
Hpy99I CGWCG 2 cut(s) 137, 179
HpyAV CCTTC 2 cut(s) 13, 719
HpyCH4III ACNGT 3 cut(s) 157, 349, 415
HpyCH4V TGCA 3 cut(s) 240, 500, 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 480, 584
HpyF3I CTNAG 2 cut(s) 93, 641
Hsp92II CATG 3 cut(s) 19, 130, 511
HspAI GCGC 1 cut(s) 5
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 3 cut(s) 129, 183, 209
LguI GCTCTTC 1 cut(s) 594
LmnI GCTCC 2 cut(s) 58, 102
Lsp1109I GCAGC 2 cut(s) 238, 484
LweI GCATC 1 cut(s) 304
MaeI CTAG 1 cut(s) 392
MaeIII GTNAC 2 cut(s) 26, 262
MalI GATC 3 cut(s) 131, 185, 211
MboI GATC 3 cut(s) 129, 183, 209
MboII GAAGA 4 cut(s) 380, 581, 691, 697
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 589, 670
MluCI AATT 4 cut(s) 65, 200, 304, 720
MmeI TCCRAC 1 cut(s) 718
MnlI CCTC 9 cut(s) 28, 38, 102, 437, 452, 515, 536, 564, 713
MroNI GCCGGC 1 cut(s) 218
MseI TTAA 1 cut(s) 719
MslI CAYNNNNRTG 1 cut(s) 512
MspI CCGG 2 cut(s) 219, 299
MspR9I CCNGG 2 cut(s) 375, 464
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 2 cut(s) 375, 464
MwoI GCNNNNNNNGC 3 cut(s) 257, 480, 584
NaeI GCCGGC 1 cut(s) 220
NdeII GATC 3 cut(s) 129, 183, 209
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 3 cut(s) 19, 130, 511
NlaIV GGNNCC 2 cut(s) 223, 552
NmuCI GTSAC 1 cut(s) 26
PagI TCATGA 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 594
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 354
PkrI GCNGC 4 cut(s) 253, 499, 639, 728
Psp6I CCWGG 2 cut(s) 373, 462
PspGI CCWGG 2 cut(s) 373, 462
PspN4I GGNNCC 2 cut(s) 223, 552
PspPI GGNCC 2 cut(s) 482, 551
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 4 cut(s) 71, 278, 614, 656
RsaNI GTAC 4 cut(s) 70, 277, 613, 655
RseI CAYNNNNRTG 1 cut(s) 512
SapI GCTCTTC 1 cut(s) 594
SaqAI TTAA 1 cut(s) 719
SatI GCNGC 4 cut(s) 252, 498, 638, 727
Sau3AI GATC 3 cut(s) 129, 183, 209
Sau96I GGNCC 2 cut(s) 482, 551
ScrFI CCNGG 2 cut(s) 375, 464
SduI GDGCHC 2 cut(s) 589, 670
SetI ASST 8 cut(s) 49, 99, 123, 262, 397, 476, 647, 737
SfaNI GCATC 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 512
Sse9I AATT 4 cut(s) 65, 200, 304, 720
SsiI CCGC 5 cut(s) 115, 189, 637, 726, 729
SspMI CTAG 1 cut(s) 392
StyD4I CCNGG 2 cut(s) 373, 462
StyI CCWWGG 3 cut(s) 213, 478, 546
TaaI ACNGT 3 cut(s) 157, 349, 415
TaqI TCGA 2 cut(s) 182, 341
TasI AATT 4 cut(s) 65, 200, 304, 720
TatI WGTACW 2 cut(s) 276, 654
TauI GCSGC 2 cut(s) 640, 729
TfiI GAWTC 1 cut(s) 354
Tru1I TTAA 1 cut(s) 719
Tru9I TTAA 1 cut(s) 719
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 2 cut(s) 251, 497
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 4 cut(s) 4, 32, 100, 223
XapI RAATTY 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.