Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013651

Physical Location & Seq

Genomic Coordinates Forward (+)

2151507 .. 2159199

Gene Structure 7693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGATGACCATTAGCAGCAACCATGTTGTGAAAGTTAAGAGGGAGAAGCTTGAAGCATGCATGACATGCCCTGTATGCAATGAGCTGTTCAGAGAAGCCACAACTATTTCTGAATGTCTTCATACATTTTGCAAGAGGTGCATATACGACAAAATAATCAATGAAGATTGTGATAGATGTCCGGTATGCAAGACAGATTTAGGGGTTGCTCCAATGGAAAAGCTCAGGGCTGACAATAGTCTGGAAGACATAAGGGCTAAGATCTTCCCTTCTGAAAGTAAAAAGCTCAAGGCACGAGTAGCAGACCACAATCTGCAAGTTGTAGACTCTGAGAAGGTATTGCCTTCCGAAACAAGAAATGCCAAGACAACTGACGTTGGTTTGCCCTCCATATATTCATCAGGGAGAAAAAAACAGAGATTCCTCTCTTCATTAGGAACAAGCACAACTACAGCTACAACGAGTGGAAAACGGTATTTTACTAGAAAGAGTTCAGTTCAACATGAGAGTCATCTTTTGACTCGAGAAGAACTTGTTCCCAAACATGAAAAGTTTCCAGAGAGGATCAAATCATCCGAGAACCTTAGAGAATATTCAACATATGCCAGACAGAATGCTACTGAGAAGTTGTTTAAGAAAGACGAGGTGAACAATGACATCATGAACAAAGCACAACCAAGATGGACAACTGGTCTGATGGAAACTGAAAGAGAAGATGCAAGAGTGCTAAGAAAGCAAGTGTTCTTAAACCTCAACAATGAACCAGAAGAGCTTAATACCTTTCAGGAACATGGCAATAATAATGAATCTATTCCTGCACCATTAGGTTCACTGCCAATTGCTAAAGGCCAACGTGGCCACAAGAGAAAAGTAGTACCAGATCCTGAGGAGTTACAAACTCCAGCACAACATGTGGTGTTTGACGCAAATATAGAAAGTGAACCAAGATCTAAACCAATCTGGTTCTCATTGCAAGCTTATCCATGGGAAGGATATGCACCCTTGCCACAGATACCTTCGTCTTACTTGAGAGTCAAAGATGGTAACTTACCCAGTTCTTTCATAAAAAAGTATCTGGTGAGAAAGCTGCATCTTCAGAGCGAGGCAGAGGTGGAGATTCTAATGTGGGGTCGGCCGATACATCCCACATTGTTGTTGCATGACTTGGTGGATTTGTGGTTACAGAAAATATCAGCATCAAATATAATACAGTCCACAGTAGGCAGCTCGGCAAAGGAGTGTGTGATGGTTATAACCTACTGTCGAAAAGTGCTACACCGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

429

Amino Acids

48.99

Weight (kDa)

8.95

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	23 - 63	1.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	23 - 61	9e-07	RING-type zinc-finger
zf-C3HC4	PF00097	23 - 63	5.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013651)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02340 FvH4_4g02340
malus_domestica	MD13G1205400.v1.1 MD16G1207100.v1.1
prunus_persica	Prupe.1G028000_v2.0.a1 Prupe.1G028000_v2.0.a1 Prupe.1G028000_v2.0.a1 Prupe.1G028000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0389721
rosa_laevigata	RLG00000009960
rosa_multiflora	Rmu_sc0003144.1_g000010
rosa_roxburghii	Rroxscaffold_5G00335720
rosa_rugosa	Rorug03G0324900
rosa_samantha	Rh4AG029800 Rh4BG022900 Rh4CG031600 Rh4DG023200
rosa_wichuraiana	Rw4G002230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1253
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	1 cut(s)	1279
AclWI	GGATC	2 cut(s)	572, 875
AcoI	YGGCCR	2 cut(s)	856, 1133
AcuI	CTGAAG	1 cut(s)	1079
AfaI	GTAC	1 cut(s)	876
AfiI	CCNNNNNNNGG	1 cut(s)	989
AflIII	ACRYGT	1 cut(s)	910
AgsI	TTSAA	3 cut(s)	53, 500, 597
AhdI	GACNNNNNGTC	1 cut(s)	690
AluBI	AGCT	9 cut(s)	49, 85, 223, 286, 455, 772, 977, 1087, 1227
AluI	AGCT	9 cut(s)	49, 85, 223, 286, 455, 772, 977, 1087, 1227
AlwI	GGATC	2 cut(s)	572, 875
AlwNI	CAGNNNCTG	1 cut(s)	884
Ama87I	CYCGRG	1 cut(s)	522
AoxI	GGCC	3 cut(s)	847, 856, 1133
ApeKI	GCWGC	3 cut(s)	15, 1087, 1224
Asp700I	GAANNNNTTC	5 cut(s)	117, 490, 534, 552, 810
AsuHPI	GGTGA	2 cut(s)	658, 1090
AvaI	CYCGRG	1 cut(s)	522
AxyI	CCTNAGG	1 cut(s)	885
BaeI	ACNNNNGTAYC	2 cut(s)	1004, 1037
BalI	TGGCCA	1 cut(s)	858
BauI	CACGAG	1 cut(s)	294
BbsI	GAAGAC	2 cut(s)	110, 252
BbvI	GCAGC	3 cut(s)	27, 1074, 1236
BccI	CCATC	4 cut(s)	675, 691, 1034, 1240
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	450
BglI	GCCNNNNNGGC	1 cut(s)	855
BglII	AGATCT	2 cut(s)	261, 947
BisI	GCNGC	3 cut(s)	16, 1088, 1225
BlsI	GCNGC	3 cut(s)	17, 1089, 1226
BmeRI	GACNNNNNGTC	1 cut(s)	690
BmeT110I	CYCGRG	1 cut(s)	522
BmrI	ACTGGG	1 cut(s)	1047
BmsI	GCATC	3 cut(s)	706, 1099, 1205
BmuI	ACTGGG	1 cut(s)	1047
BoxI	GACNNNNGTC	1 cut(s)	237
BpiI	GAAGAC	2 cut(s)	110, 252
BpmI	CTGGAG	1 cut(s)	885
Bpu10I	CCTNAGC	1 cut(s)	224
BpuEI	CTTGAG	2 cut(s)	272, 1048
BsaJI	CCNNGG	1 cut(s)	983
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	989
Bse1I	ACTGG	2 cut(s)	694, 1053
Bse21I	CCTNAGG	1 cut(s)	885
Bse3DI	GCAATG	2 cut(s)	85, 968
BseDI	CCNNGG	1 cut(s)	983
BseGI	GGATG	2 cut(s)	572, 1141
BseLI	CCNNNNNNNGG	1 cut(s)	989
BseMI	GCAATG	2 cut(s)	85, 968
BseMII	CTCAG	4 cut(s)	238, 321, 612, 876
BseNI	ACTGG	2 cut(s)	694, 1053
BseRI	GAGGAG	1 cut(s)	902
BseX3I	CGGCCG	1 cut(s)	1133
BseXI	GCAGC	3 cut(s)	27, 1074, 1236
BsgI	GTGCAG	1 cut(s)	801
Bsh1285I	CGRYCG	1 cut(s)	1136
BshFI	GGCC	3 cut(s)	849, 858, 1135
BsiEI	CGRYCG	1 cut(s)	1136
BsiHKCI	CYCGRG	1 cut(s)	522
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	989
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	3 cut(s)	849, 858, 1135
BsoBI	CYCGRG	1 cut(s)	522
Bsp143I	GATC	4 cut(s)	261, 564, 880, 947
Bsp19I	CCATGG	1 cut(s)	983
BspACI	CCGC	1 cut(s)	1279
BspANI	GGCC	3 cut(s)	849, 858, 1135
BspCNI	CTCAG	4 cut(s)	237, 322, 613, 877
BspHI	TCATGA	1 cut(s)	660
BspPI	GGATC	2 cut(s)	572, 875
BspQI	GCTCTTC	1 cut(s)	762
BsrDI	GCAATG	2 cut(s)	85, 968
BsrI	ACTGG	2 cut(s)	694, 1053
BssECI	CCNNGG	1 cut(s)	983
BssMI	GATC	4 cut(s)	261, 564, 880, 947
BssSI	CACGAG	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	983
Bst2BI	CACGAG	1 cut(s)	294
Bst4CI	ACNGT	4 cut(s)	474, 1212, 1219, 1262
Bst6I	CTCTTC	2 cut(s)	433, 762
BstAPI	GCANNNNNTGC	2 cut(s)	66, 138
BstC8I	GCNNGC	2 cut(s)	58, 975
BstDEI	CTNAG	7 cut(s)	224, 258, 330, 584, 621, 728, 885
BstDSI	CCRYGG	1 cut(s)	983
BstF5I	GGATG	2 cut(s)	572, 1141
BstKTI	GATC	4 cut(s)	264, 567, 883, 950
BstMBI	GATC	4 cut(s)	261, 564, 880, 947
BstMCI	CGRYCG	1 cut(s)	1136
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 75, 138, 299, 733, 855
BstNSI	RCATGY	3 cut(s)	60, 69, 914
BstPAI	GACNNNNGTC	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	3 cut(s)	27, 1074, 1236
BstV2I	GAAGAC	2 cut(s)	110, 252
BstX2I	RGATCY	3 cut(s)	261, 880, 947
BstYI	RGATCY	3 cut(s)	261, 880, 947
BstZI	CGGCCG	1 cut(s)	1133
Bsu36I	CCTNAGG	1 cut(s)	885
BsuRI	GGCC	3 cut(s)	849, 858, 1135
BtgI	CCRYGG	1 cut(s)	983
BtsCI	GGATG	2 cut(s)	572, 1141
BtsI	GCAGTG	1 cut(s)	830
BtsIMutI	CAGTG	1 cut(s)	830
Cac8I	GCNNGC	2 cut(s)	58, 975
CaiI	CAGNNNCTG	1 cut(s)	884
CciI	TCATGA	1 cut(s)	660
CseI	GACGC	1 cut(s)	932
Csp6I	GTAC	1 cut(s)	875
CviQI	GTAC	1 cut(s)	875
DdeI	CTNAG	7 cut(s)	224, 258, 330, 584, 621, 728, 885
DpnI	GATC	4 cut(s)	263, 566, 882, 949
DpnII	GATC	4 cut(s)	261, 564, 880, 947
DriI	GACNNNNNGTC	1 cut(s)	690
EaeI	YGGCCR	2 cut(s)	856, 1133
EagI	CGGCCG	1 cut(s)	1133
Eam1104I	CTCTTC	2 cut(s)	433, 762
Eam1105I	GACNNNNNGTC	1 cut(s)	690
EarI	CTCTTC	2 cut(s)	433, 762
EclXI	CGGCCG	1 cut(s)	1133
Eco130I	CCWWGG	1 cut(s)	983
Eco52I	CGGCCG	1 cut(s)	1133
Eco57I	CTGAAG	1 cut(s)	1079
Eco81I	CCTNAGG	1 cut(s)	885
Eco88I	CYCGRG	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	983
EcoT22I	ATGCAT	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	983
FauNDI	CATATG	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	16, 1088, 1225
FokI	GGATG	2 cut(s)	559, 1128
Fsp4HI	GCNGC	3 cut(s)	16, 1088, 1225
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	3 cut(s)	16, 1088, 1225
GsuI	CTGGAG	1 cut(s)	885
HaeIII	GGCC	3 cut(s)	849, 858, 1135
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	932
HindIII	AAGCTT	2 cut(s)	47, 975
HinfI	GANTC	7 cut(s)	326, 420, 508, 520, 806, 1032, 1117
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	2 cut(s)	658, 1090
Hpy166II	GTNNAC	5 cut(s)	325, 649, 830, 941, 1215
Hpy188I	TCNGA	8 cut(s)	92, 112, 274, 331, 349, 577, 696, 1098
Hpy188III	TCNNGA	6 cut(s)	242, 524, 557, 661, 785, 884
Hpy8I	GTNNAC	5 cut(s)	325, 649, 830, 941, 1215
HpyAV	CCTTC	5 cut(s)	279, 328, 354, 983, 1026
HpyCH4III	ACNGT	4 cut(s)	474, 1212, 1219, 1262
HpyCH4IV	ACGT	2 cut(s)	375, 853
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 75, 138, 299, 733, 855
HpyF3I	CTNAG	7 cut(s)	224, 258, 330, 584, 621, 728, 885
HpySE526I	ACGT	2 cut(s)	375, 853
Kzo9I	GATC	4 cut(s)	261, 564, 880, 947
LguI	GCTCTTC	1 cut(s)	762
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	3 cut(s)	27, 1074, 1236
LweI	GCATC	3 cut(s)	706, 1099, 1205
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	2 cut(s)	375, 853
MaeIII	GTNAC	3 cut(s)	891, 1043, 1179
MalI	GATC	4 cut(s)	263, 566, 882, 949
MboI	GATC	4 cut(s)	261, 564, 880, 947
MboII	GAAGA	9 cut(s)	110, 176, 256, 257, 420, 539, 725, 779, 1085
MfeI	CAATTG	1 cut(s)	837
MflI	RGATCY	3 cut(s)	261, 880, 947
MlsI	TGGCCA	1 cut(s)	858
MluCI	AATT	1 cut(s)	837
MluNI	TGGCCA	1 cut(s)	858
MlyI	GAGTC	4 cut(s)	320, 514, 517, 1041
Mox20I	TGGCCA	1 cut(s)	858
Mph1103I	ATGCAT	1 cut(s)	62
MroXI	GAANNNNTTC	5 cut(s)	117, 490, 534, 552, 810
MscI	TGGCCA	1 cut(s)	858
MseI	TTAA	4 cut(s)	36, 633, 746, 774
Msp20I	TGGCCA	1 cut(s)	858
MspA1I	CMGCKG	1 cut(s)	1281
MspI	CCGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	837
Mva1269I	GAATGC	1 cut(s)	619
MwoI	GCNNNNNNNGC	6 cut(s)	66, 75, 138, 299, 733, 855
NcoI	CCATGG	1 cut(s)	983
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	4 cut(s)	261, 564, 880, 947
NmeAIII	GCCGAG	1 cut(s)	1208
NsiI	ATGCAT	1 cut(s)	62
NspI	RCATGY	3 cut(s)	60, 69, 914
PaeI	GCATGC	1 cut(s)	60
PaeR7I	CTCGAG	1 cut(s)	522
PagI	TCATGA	1 cut(s)	660
PciI	ACATGT	1 cut(s)	910
PciSI	GCTCTTC	1 cut(s)	762
PctI	GAATGC	1 cut(s)	619
PdmI	GAANNNNTTC	5 cut(s)	117, 490, 534, 552, 810
PfeI	GAWTC	3 cut(s)	420, 806, 1117
PkrI	GCNGC	3 cut(s)	17, 1089, 1226
PleI	GAGTC	4 cut(s)	320, 514, 516, 1040
PpsI	GAGTC	4 cut(s)	320, 514, 516, 1040
PscI	ACATGT	1 cut(s)	910
PshAI	GACNNNNGTC	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	1253
PstNI	CAGNNNCTG	1 cut(s)	884
PsuI	RGATCY	3 cut(s)	261, 880, 947
RsaI	GTAC	1 cut(s)	876
RsaNI	GTAC	1 cut(s)	875
SapI	GCTCTTC	1 cut(s)	762
SaqAI	TTAA	4 cut(s)	36, 633, 746, 774
SatI	GCNGC	3 cut(s)	16, 1088, 1225
Sau3AI	GATC	4 cut(s)	261, 564, 880, 947
SchI	GAGTC	4 cut(s)	320, 514, 517, 1041
SfaNI	GCATC	3 cut(s)	706, 1099, 1205
SfcI	CTRYAG	1 cut(s)	450
SfiI	GGCCNNNNNGGCC	1 cut(s)	855
Sfr274I	CTCGAG	1 cut(s)	522
SlaI	CTCGAG	1 cut(s)	522
SmlI	CTYRAG	3 cut(s)	287, 522, 1027
SmoI	CTYRAG	3 cut(s)	287, 522, 1027
SphI	GCATGC	1 cut(s)	60
Sse9I	AATT	1 cut(s)	837
SsiI	CCGC	1 cut(s)	1279
SspI	AATATT	1 cut(s)	593
SspMI	CTAG	1 cut(s)	483
StyI	CCWWGG	1 cut(s)	983
TaaI	ACNGT	4 cut(s)	474, 1212, 1219, 1262
TaiI	ACGT	2 cut(s)	378, 856
TaqI	TCGA	2 cut(s)	523, 1264
TasI	AATT	1 cut(s)	837
TfiI	GAWTC	3 cut(s)	420, 806, 1117
Tru1I	TTAA	4 cut(s)	36, 633, 746, 774
Tru9I	TTAA	4 cut(s)	36, 633, 746, 774
TscAI	CASTG	1 cut(s)	837
TseI	GCWGC	3 cut(s)	15, 1087, 1224
TspDTI	ATGAA	9 cut(s)	110, 177, 387, 420, 561, 677, 774, 819, 1051
TspRI	CASTG	1 cut(s)	837
XceI	RCATGY	3 cut(s)	60, 69, 914
XhoI	CTCGAG	1 cut(s)	522
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	5 cut(s)	117, 490, 534, 552, 810
XspI	CTAG	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.