Prupe.1G028000_v2.0.a1

E3 ubiquitin protein ligase DRIP2-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
1962929 .. 1968133
5205 bp
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UTR
Exon/CDS
Intron
Prupe.1G028000.3

Sequence Viewer

Length: 1446 bp
ATGCACCATGTGATGATGTTGTTGTTGTGTCCAATGCCAATGATGAGTAGCCAGGTGGTGAAGAGAGAGAGAGCAAAACTCGAAGCTTGCATGACATGTCCACTCTGCAATAAACTCTTCAGCGAGGCCACAACCATATCCGAATGCCTTCATACCTTTTGCAGGAAGTGCATATATAAGAAGATAATAGATGAAGAGGTGGATTACTGTCCAAAATGCAAGGCTGATTTAGGGGTTTCACCACTGGAAAAACTCAGGGCCGACAACAATTGGGAAGATATAAGGGCCAAGCTCTTCCCTTCTGACAGAAAAAAGGTCAACGCAGCTGCAGACCTCAATGTGCAAGATATAAAGGAAAAGACCGTCCCTTCTGAAACAAAAGAGTTTAAGGCACCTGCAGACCGCAATATGCAAGATATAACGCCAAAGCTCTTTCCTTCTGAAAGAGAACAGGTTAAGGCACCTTCTGTGTCCTCAGTAACATTTCCAGCTAAAAGAAAGGAGAGGTATCTGTCTTCATTGGTAATAAGTACACCTCAAGTATCGTCCAGCTCTGATATGAGTGGAAGAAGAAGGTATCCTACAAGAAGGAGTTTTACTCTACAAGAGTCTCTTTCCATTCGGGAGCCTGAGAAGAAAGAGGAAGATTTCCTGGAGAGACTTAACTCATCAGGGACTCCAAAGAAAGATGCAGTATACACCAGACAGAATTCTATTGAAGGATCATCCAAGCAACACATGGTTAACAAGGGTGTGGAGGACAATGCTCAACCAGGGGATGGGAAAGCTAATTTGTGGAAACCATTAAACCGCCGGGTGGAAGCTGCAAGCAATACAAGTGCTGACAAGCTTCCTGTGCAACTTCCTGCTGCCGAATCAGTGTTGCCTGATAACCTCAACAAAGAAACACGTGAGATTAAGGCCATTCCGGAACATGATAACATATCCAAAGTCCATGGCAATGAAAATGAATCAAATCCTGCACCATCAGGTTCAGTGACATTTAGGAAAGCACAACGTGGTCGAAAAAGAAAACCAGCTGCATCCCAGGGACTAAATATTTCAGCACAGTATGTCATTGATGCAAATAATAAATGTGAAAGAAGATTTAGGCCAATTTGGTTCTCGTTAATTGCTTCCAATCACCAGGACGGCTATGCGCCCTTGCCACAGATACCCTCATGCTACTTGAGAGTCAAGGATGGCAATTTACCTGTTTCTTTCATAAAAAAGTATCTGGTAAAAAAGCTGGAGCTTACTAGCGAGGATGAGGTGGAGATCTCATTGCTAGGTAAGCCGGTAATTCCTACATTGCAGCTGCAGAACTTGGTGGACTTGTGGTTACGGACAACACCAGCATCACAAATAATACAGACCTCCCCAGGAAGCTCAGCAAAGGAATATGTGATGGCCCTCATGTACGGTCGAAAAATGCAACTCCGGTAG

Protein Analysis

482

Amino Acids

54.26

Weight (kDa)

9.32

Isoelectric Point (pI)

60.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 403
AccB1I GGYRCC 2 cut(s) 391, 460
AccB7I CCANNNNNTGG 1 cut(s) 779
AccI GTMKAC 1 cut(s) 696
AccIII TCCGGA 1 cut(s) 928
AciI CCGC 2 cut(s) 403, 811
AclWI GGATC 1 cut(s) 730
AcsI RAATTY 1 cut(s) 709
AcuI CTGAAG 1 cut(s) 103
AcvI CACGTG 1 cut(s) 911
AdeI CACNNNGTG 2 cut(s) 10, 1019
AfaI GTAC 2 cut(s) 532, 1421
AfiI CCNNNNNNNGG 3 cut(s) 162, 779, 817
AflIII ACRYGT 2 cut(s) 95, 908
AgsI TTSAA 1 cut(s) 719
AjnI CCWGG 6 cut(s) 51, 651, 772, 1047, 1146, 1381
Alw26I GTCTC 2 cut(s) 615, 652
AlwI GGATC 1 cut(s) 730
Aor13HI TCCGGA 1 cut(s) 928
AoxI GGCC 6 cut(s) 126, 258, 285, 921, 1112, 1410
ApeKI GCWGC 7 cut(s) 323, 326, 824, 869, 1040, 1315, 1318
ApoI RAATTY 1 cut(s) 709
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 1162
AspS9I GGNCC 3 cut(s) 258, 285, 1411
AsuC2I CCSGG 1 cut(s) 815
AsuHPI GGTGA 3 cut(s) 70, 231, 1136
BanI GGYRCC 2 cut(s) 391, 460
BarI GAAGNNNNNNTAC 4 cut(s) 565, 580, 597, 612
BbrPI CACGTG 1 cut(s) 911
BbsI GAAGAC 1 cut(s) 507
BbvI GCAGC 7 cut(s) 313, 335, 811, 856, 1027, 1305, 1327
BccI CCATC 4 cut(s) 773, 994, 1196, 1402
BceAI ACGGC 1 cut(s) 1168
BciT130I CCWGG 6 cut(s) 53, 653, 774, 1049, 1148, 1383
BciVI GTATCC 1 cut(s) 588
BcnI CCSGG 1 cut(s) 815
BcoDI GTCTC 2 cut(s) 615, 652
BfaI CTAG 2 cut(s) 1260, 1289
BfmI CTRYAG 3 cut(s) 327, 396, 1319
BfuAI ACCTGC 1 cut(s) 403
BfuI GTATCC 1 cut(s) 588
BglII AGATCT 1 cut(s) 1278
BisI GCNGC 7 cut(s) 324, 327, 825, 870, 1041, 1316, 1319
BlpI GCTNAGC 1 cut(s) 1390
BlsI GCNGC 7 cut(s) 325, 328, 826, 871, 1042, 1317, 1320
Bme1390I CCNGG 7 cut(s) 53, 653, 774, 815, 1049, 1148, 1383
BmgT120I GGNCC 3 cut(s) 258, 285, 1411
BmiI GGNNCC 3 cut(s) 393, 462, 627
BmrFI CCNGG 7 cut(s) 53, 653, 774, 815, 1049, 1148, 1383
BmsI GCATC 4 cut(s) 679, 1052, 1072, 1367
BpiI GAAGAC 1 cut(s) 507
BplI GAGNNNNNCTC 4 cut(s) 63, 95, 583, 615
BpmI CTGGAG 2 cut(s) 674, 1271
Bpu1102I GCTNAGC 1 cut(s) 1390
BpuEI CTTGAG 2 cut(s) 522, 1210
BpuMI CCSGG 1 cut(s) 815
BsaAI YACGTR 1 cut(s) 911
BsaJI CCNNGG 5 cut(s) 773, 955, 1047, 1048, 1381
BsaWI WCCGGW 2 cut(s) 928, 1440
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 779, 817
Bse118I RCCGGY 1 cut(s) 1297
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 3 cut(s) 967, 1283, 1310
BseAI TCCGGA 1 cut(s) 928
BseBI CCWGG 6 cut(s) 53, 653, 774, 1049, 1148, 1383
BseDI CCNNGG 5 cut(s) 773, 955, 1047, 1048, 1381
BseGI GGATG 5 cut(s) 725, 784, 1043, 1207, 1273
BseLI CCNNNNNNNGG 3 cut(s) 162, 779, 817
BseMI GCAATG 3 cut(s) 967, 1283, 1310
BseMII CTCAG 4 cut(s) 268, 489, 621, 1404
BseNI ACTGG 1 cut(s) 249
BseXI GCAGC 7 cut(s) 313, 335, 811, 856, 1027, 1305, 1327
BsgI GTGCAG 1 cut(s) 966
Bsh1285I CGRYCG 1 cut(s) 1426
BshFI GGCC 6 cut(s) 128, 260, 287, 923, 1114, 1412
BshNI GGYRCC 2 cut(s) 391, 460
BsiEI CGRYCG 1 cut(s) 1426
BsiSI CCGG 4 cut(s) 814, 929, 1298, 1441
BslFI GGGAC 3 cut(s) 350, 688, 1065
BslI CCNNNNNNNGG 3 cut(s) 162, 779, 817
BsmAI GTCTC 2 cut(s) 615, 652
BsmFI GGGAC 3 cut(s) 350, 688, 1065
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 6 cut(s) 128, 260, 287, 923, 1114, 1412
Bsp13I TCCGGA 1 cut(s) 928
Bsp143I GATC 2 cut(s) 722, 1278
Bsp1720I GCTNAGC 1 cut(s) 1390
Bsp19I CCATGG 1 cut(s) 955
BspACI CCGC 2 cut(s) 403, 811
BspANI GGCC 6 cut(s) 128, 260, 287, 923, 1114, 1412
BspCNI CTCAG 4 cut(s) 267, 488, 622, 1403
BspEI TCCGGA 1 cut(s) 928
BspLI GGNNCC 3 cut(s) 393, 462, 627
BspMAI CTGCAG 3 cut(s) 331, 400, 1323
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 1 cut(s) 730
BspQI GCTCTTC 1 cut(s) 299
BspT107I GGYRCC 2 cut(s) 391, 460
BsrDI GCAATG 3 cut(s) 967, 1283, 1310
BsrFI RCCGGY 1 cut(s) 1297
BsrI ACTGG 1 cut(s) 249
BssAI RCCGGY 1 cut(s) 1297
BssECI CCNNGG 5 cut(s) 773, 955, 1047, 1048, 1381
BssMI GATC 2 cut(s) 722, 1278
BssNAI GTATAC 1 cut(s) 697
BssT1I CCWWGG 1 cut(s) 955
Bst1107I GTATAC 1 cut(s) 697
Bst2UI CCWGG 6 cut(s) 53, 653, 774, 1049, 1148, 1383
Bst4CI ACNGT 4 cut(s) 209, 364, 1071, 1424
Bst6I CTCTTC 4 cut(s) 56, 122, 189, 299
BstAPI GCANNNNNTGC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 911
BstC8I GCNNGC 2 cut(s) 88, 829
BstDEI CTNAG 4 cut(s) 254, 475, 630, 1390
BstDSI CCRYGG 1 cut(s) 955
BstENI CCTNNNNNAGG 1 cut(s) 160
BstF5I GGATG 5 cut(s) 725, 784, 1043, 1207, 1273
BstHHI GCGC 1 cut(s) 1162
BstKTI GATC 2 cut(s) 725, 1281
BstMAI GTCTC 2 cut(s) 615, 652
BstMBI GATC 2 cut(s) 722, 1278
BstMCI CGRYCG 1 cut(s) 1426
BstMWI GCNNNNNNNGC 3 cut(s) 168, 856, 1294
BstNI CCWGG 6 cut(s) 53, 653, 774, 1049, 1148, 1383
BstNSI RCATGY 1 cut(s) 99
BstSCI CCNGG 7 cut(s) 51, 651, 772, 813, 1047, 1146, 1381
BstSFI CTRYAG 3 cut(s) 327, 396, 1319
BstV1I GCAGC 7 cut(s) 313, 335, 811, 856, 1027, 1305, 1327
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 1 cut(s) 1278
BstYI RGATCY 1 cut(s) 1278
BstZ17I GTATAC 1 cut(s) 697
BsuI GTATCC 1 cut(s) 588
BsuRI GGCC 6 cut(s) 128, 260, 287, 923, 1114, 1412
BtgI CCRYGG 1 cut(s) 955
BtsCI GGATG 5 cut(s) 725, 784, 1043, 1207, 1273
BtsIMutI CAGTG 3 cut(s) 242, 885, 1002
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 88, 829
CfoI GCGC 1 cut(s) 1162
Cfr10I RCCGGY 1 cut(s) 1297
Cfr13I GGNCC 3 cut(s) 258, 285, 1411
Csp6I GTAC 2 cut(s) 531, 1420
CviAII CATG 8 cut(s) 8, 91, 96, 739, 935, 956, 1182, 1417
CviQI GTAC 2 cut(s) 531, 1420
DdeI CTNAG 4 cut(s) 254, 475, 630, 1390
DpnI GATC 2 cut(s) 724, 1280
DpnII GATC 2 cut(s) 722, 1278
DraIII CACNNNGTG 2 cut(s) 10, 1019
Eam1104I CTCTTC 4 cut(s) 56, 122, 189, 299
EarI CTCTTC 4 cut(s) 56, 122, 189, 299
Eco130I CCWWGG 1 cut(s) 955
Eco57I CTGAAG 1 cut(s) 103
Eco72I CACGTG 1 cut(s) 911
EcoNI CCTNNNNNAGG 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 709
EcoRII CCWGG 6 cut(s) 51, 651, 772, 1047, 1146, 1381
EcoT14I CCWWGG 1 cut(s) 955
ErhI CCWWGG 1 cut(s) 955
FaeI CATG 8 cut(s) 11, 94, 99, 742, 938, 959, 1185, 1420
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 3 cut(s) 350, 688, 1065
FatI CATG 8 cut(s) 7, 90, 95, 738, 934, 955, 1181, 1416
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 7 cut(s) 324, 327, 825, 870, 1041, 1316, 1319
FokI GGATG 5 cut(s) 712, 791, 1030, 1214, 1280
Fsp4HI GCNGC 7 cut(s) 324, 327, 825, 870, 1041, 1316, 1319
FspBI CTAG 2 cut(s) 1260, 1289
GlaI GCGC 1 cut(s) 1161
GluI GCNGC 7 cut(s) 324, 327, 825, 870, 1041, 1316, 1319
GsuI CTGGAG 2 cut(s) 674, 1271
HaeIII GGCC 6 cut(s) 128, 260, 287, 923, 1114, 1412
HapII CCGG 4 cut(s) 814, 929, 1298, 1441
HhaI GCGC 1 cut(s) 1162
Hin1II CATG 8 cut(s) 11, 94, 99, 742, 938, 959, 1185, 1420
Hin6I GCGC 1 cut(s) 1160
HinP1I GCGC 1 cut(s) 1160
HincII GTYRAC 2 cut(s) 319, 745
HindII GTYRAC 2 cut(s) 319, 745
HindIII AAGCTT 2 cut(s) 84, 848
HinfI GANTC 5 cut(s) 608, 676, 875, 971, 1194
HpaI GTTAAC 1 cut(s) 745
HpaII CCGG 4 cut(s) 814, 929, 1298, 1441
HphI GGTGA 3 cut(s) 70, 231, 1136
Hpy166II GTNNAC 6 cut(s) 101, 319, 533, 697, 745, 1333
Hpy188I TCNGA 5 cut(s) 142, 304, 373, 442, 556
Hpy188III TCNNGA 2 cut(s) 623, 929
Hpy8I GTNNAC 6 cut(s) 101, 319, 533, 697, 745, 1333
HpyAV CCTTC 8 cut(s) 158, 309, 378, 447, 474, 567, 582, 713
HpyCH4III ACNGT 4 cut(s) 209, 364, 1071, 1424
HpyCH4IV ACGT 2 cut(s) 910, 1018
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 856, 1294
HpyF3I CTNAG 4 cut(s) 254, 475, 630, 1390
HpySE526I ACGT 2 cut(s) 910, 1018
Hsp92II CATG 8 cut(s) 11, 94, 99, 742, 938, 959, 1185, 1420
HspAI GCGC 1 cut(s) 1160
Kpn2I TCCGGA 1 cut(s) 928
KspAI GTTAAC 1 cut(s) 745
Kzo9I GATC 2 cut(s) 722, 1278
LguI GCTCTTC 1 cut(s) 299
LmnI GCTCC 2 cut(s) 625, 1252
Lsp1109I GCAGC 7 cut(s) 313, 335, 811, 856, 1027, 1305, 1327
LweI GCATC 4 cut(s) 679, 1052, 1072, 1367
MaeI CTAG 2 cut(s) 1260, 1289
MaeII ACGT 2 cut(s) 910, 1018
MaeIII GTNAC 3 cut(s) 478, 997, 1341
MalI GATC 2 cut(s) 724, 1280
MboI GATC 2 cut(s) 722, 1278
MfeI CAATTG 1 cut(s) 268
MflI RGATCY 1 cut(s) 1278
MluCI AATT 7 cut(s) 268, 709, 790, 1116, 1131, 1207, 1302
MlyI GAGTC 3 cut(s) 617, 670, 1203
MroI TCCGGA 1 cut(s) 928
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 7 cut(s) 387, 456, 663, 744, 806, 918, 1130
MslI CAYNNNNRTG 1 cut(s) 960
MspA1I CMGCKG 3 cut(s) 326, 1040, 1318
MspI CCGG 4 cut(s) 814, 929, 1298, 1441
MspR9I CCNGG 7 cut(s) 53, 653, 774, 815, 1049, 1148, 1383
MunI CAATTG 1 cut(s) 268
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 6 cut(s) 53, 653, 774, 1049, 1148, 1383
MwoI GCNNNNNNNGC 3 cut(s) 168, 856, 1294
NciI CCSGG 1 cut(s) 815
NcoI CCATGG 1 cut(s) 955
NdeII GATC 2 cut(s) 722, 1278
NlaIII CATG 8 cut(s) 11, 94, 99, 742, 938, 959, 1185, 1420
NlaIV GGNNCC 3 cut(s) 393, 462, 627
NmuCI GTSAC 1 cut(s) 997
NspI RCATGY 1 cut(s) 99
PaqCI CACCTGC 1 cut(s) 403
PasI CCCWGGG 1 cut(s) 1048
PciI ACATGT 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 299
PctI GAATGC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 2 cut(s) 875, 971
PflMI CCANNNNNTGG 1 cut(s) 779
PfoI TCCNGGA 1 cut(s) 651
PkrI GCNGC 7 cut(s) 325, 328, 826, 871, 1042, 1317, 1320
PleI GAGTC 3 cut(s) 616, 670, 1202
PmaCI CACGTG 1 cut(s) 911
PmlI CACGTG 1 cut(s) 911
PpsI GAGTC 3 cut(s) 616, 670, 1202
Ppu21I YACGTR 1 cut(s) 911
PscI ACATGT 1 cut(s) 95
Psp6I CCWGG 6 cut(s) 51, 651, 772, 1047, 1146, 1381
PspCI CACGTG 1 cut(s) 911
PspGI CCWGG 6 cut(s) 51, 651, 772, 1047, 1146, 1381
PspN4I GGNNCC 3 cut(s) 393, 462, 627
PspPI GGNCC 3 cut(s) 258, 285, 1411
PstI CTGCAG 3 cut(s) 331, 400, 1323
PsuI RGATCY 1 cut(s) 1278
PvuII CAGCTG 3 cut(s) 326, 1040, 1318
RsaI GTAC 2 cut(s) 532, 1421
RsaNI GTAC 2 cut(s) 531, 1420
RseI CAYNNNNRTG 1 cut(s) 960
SapI GCTCTTC 1 cut(s) 299
SaqAI TTAA 7 cut(s) 387, 456, 663, 744, 806, 918, 1130
SatI GCNGC 7 cut(s) 324, 327, 825, 870, 1041, 1316, 1319
Sau3AI GATC 2 cut(s) 722, 1278
Sau96I GGNCC 3 cut(s) 258, 285, 1411
SchI GAGTC 3 cut(s) 617, 670, 1203
ScrFI CCNGG 7 cut(s) 53, 653, 774, 815, 1049, 1148, 1383
SfaNI GCATC 4 cut(s) 679, 1052, 1072, 1367
SfcI CTRYAG 3 cut(s) 327, 396, 1319
SmiMI CAYNNNNRTG 1 cut(s) 960
SmlI CTYRAG 2 cut(s) 537, 1189
SmoI CTYRAG 2 cut(s) 537, 1189
Sse9I AATT 7 cut(s) 268, 709, 790, 1116, 1131, 1207, 1302
SsiI CCGC 2 cut(s) 403, 811
SspI AATATT 1 cut(s) 1060
SspMI CTAG 2 cut(s) 1260, 1289
StyD4I CCNGG 7 cut(s) 51, 651, 772, 813, 1047, 1146, 1381
StyI CCWWGG 1 cut(s) 955
TaaI ACNGT 4 cut(s) 209, 364, 1071, 1424
TaiI ACGT 2 cut(s) 913, 1021
TaqI TCGA 3 cut(s) 81, 1024, 1426
TasI AATT 7 cut(s) 268, 709, 790, 1116, 1131, 1207, 1302
TatI WGTACW 1 cut(s) 530
TfiI GAWTC 2 cut(s) 875, 971
Tru1I TTAA 7 cut(s) 387, 456, 663, 744, 806, 918, 1130
Tru9I TTAA 7 cut(s) 387, 456, 663, 744, 806, 918, 1130
TscAI CASTG 3 cut(s) 249, 885, 1002
TseFI GTSAC 1 cut(s) 997
TseI GCWGC 7 cut(s) 323, 326, 824, 869, 1040, 1315, 1318
Tsp45I GTSAC 1 cut(s) 997
TspDTI ATGAA 6 cut(s) 140, 207, 507, 978, 984, 1213
TspGWI ACGGA 1 cut(s) 1360
TspRI CASTG 3 cut(s) 249, 885, 1002
Van91I CCANNNNNTGG 1 cut(s) 779
XagI CCTNNNNNAGG 1 cut(s) 160
XapI RAATTY 1 cut(s) 709
XceI RCATGY 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 1 cut(s) 736
XmiI GTMKAC 1 cut(s) 696
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 2 cut(s) 1260, 1289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.