Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003144.1

Orthogroup ID

OG0013651

Physical Location & Seq

Genomic Coordinates Reverse (-)

51826 .. 52724

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003144.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgtttcttctgttttgtaattattcttcggttggcagggctgacaatagtctagaagacataagggcgaagctcttcccttctggaagtaaaaaggtcaaggcacaagcagcggaccgcaatctgcaagttgcaggctctgaaatggtcttgccttcagaaacaagaaaaaccaaggcacctgaagttaatgtgccctccatattgttaccagggagaagaaagcagagatacctctcttcattaggaacaagcgctcctacagttacaaccaggtcctctatgaggtattttaccagaaagagttcagctcttcaagagagtcatctttcgactctagaagagcctgttcaccaacatgaagattttccggagagggttaaatcatctgagaaccttaaagaagatgcagcacatgccagacagaatgctactgagaaattgtctcagaaagatggggagaataatggcaacgagaacaaagcacaaccaaggtggactactgggctgatggaagctgaaagagaagctgcaagagtcccaataaggcaagtgttcctcaacctcaacaatgaaccagaagagcttcaacccattcaggaacatggcaataatggtgaatgtactcctgcaccatcagtttcagtgccaagtgccaaaggccaacgtggccgcaagagaaaagcagtatcagaacccgaggagttaaaaactccagcacaacctgtggtatctgacgcaaacaatgaaggtgaaacatcatttaaaccaatctggttctcgttggaagcttatccatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

267

Amino Acids

29.74

Weight (kDa)

8.45

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013651)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02340 FvH4_4g02340
malus_domestica	MD13G1205400.v1.1 MD16G1207100.v1.1
prunus_persica	Prupe.1G028000_v2.0.a1 Prupe.1G028000_v2.0.a1 Prupe.1G028000_v2.0.a1 Prupe.1G028000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0389721
rosa_laevigata	RLG00000009960
rosa_multiflora	Rmu_sc0003144.1_g000010
rosa_roxburghii	Rroxscaffold_5G00335720
rosa_rugosa	Rorug03G0324900
rosa_samantha	Rh4AG029800 Rh4BG022900 Rh4CG031600 Rh4DG023200
rosa_wichuraiana	Rw4G002230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AccIII	TCCGGA	1 cut(s)	370
AciI	CCGC	3 cut(s)	113, 118, 673
AcoI	YGGCCR	1 cut(s)	670
AcuI	CTGAAG	2 cut(s)	141, 204
AfaI	GTAC	1 cut(s)	625
AfeI	AGCGCT	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	317, 590
AjnI	CCWGG	2 cut(s)	211, 272
AloI	GAACNNNNNNTCC	2 cut(s)	241, 273
AluBI	AGCT	6 cut(s)	73, 311, 518, 530, 586, 791
AluI	AGCT	6 cut(s)	73, 311, 518, 530, 586, 791
Alw26I	GTCTC	1 cut(s)	450
AlwNI	CAGNNNCTG	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	698
Aor13HI	TCCGGA	1 cut(s)	370
Aor51HI	AGCGCT	1 cut(s)	256
AoxI	GGCC	2 cut(s)	661, 670
ApeKI	GCWGC	3 cut(s)	110, 410, 530
Asp700I	GAANNNNTTC	4 cut(s)	74, 304, 366, 585
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	115, 276
AsuHPI	GGTGA	3 cut(s)	344, 629, 764
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	2 cut(s)	115, 276
BaeGI	GKGCMC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	178
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	122, 422, 517
BccI	CCATC	3 cut(s)	449, 505, 643
BciT130I	CCWGG	2 cut(s)	213, 274
BcoDI	GTCTC	1 cut(s)	450
BfaI	CTAG	2 cut(s)	53, 338
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	258
BglI	GCCNNNNNGGC	1 cut(s)	669
BisI	GCNGC	4 cut(s)	111, 411, 531, 673
BlsI	GCNGC	4 cut(s)	112, 412, 532, 674
Bme1390I	CCNGG	2 cut(s)	213, 274
Bme18I	GGWCC	2 cut(s)	115, 276
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	2 cut(s)	115, 276
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	2 cut(s)	213, 274
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	397
BmuI	ACTGGG	1 cut(s)	513
BoxI	GACNNNNGTC	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
BpmI	CTGGAG	1 cut(s)	699
BsaJI	CCNNGG	5 cut(s)	174, 212, 491, 699, 797
BsaWI	WCCGGW	1 cut(s)	370
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	1 cut(s)	508
BseAI	TCCGGA	1 cut(s)	370
BseBI	CCWGG	2 cut(s)	213, 274
BseDI	CCNNGG	5 cut(s)	174, 212, 491, 699, 797
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	3 cut(s)	381, 426, 461
BseNI	ACTGG	1 cut(s)	508
BseRI	GAGGAG	1 cut(s)	716
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	3 cut(s)	122, 422, 517
BsgI	GTGCAG	1 cut(s)	615
BshFI	GGCC	2 cut(s)	663, 672
BshNI	GGYRCC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	663, 672
BsoBI	CYCGRG	1 cut(s)	698
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp13I	TCCGGA	1 cut(s)	370
Bsp19I	CCATGG	1 cut(s)	797
BspACI	CCGC	3 cut(s)	113, 118, 673
BspANI	GGCC	2 cut(s)	663, 672
BspCNI	CTCAG	3 cut(s)	382, 427, 460
BspEI	TCCGGA	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	180
BspQI	GCTCTTC	4 cut(s)	80, 318, 336, 576
BspT107I	GGYRCC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	5 cut(s)	174, 212, 491, 699, 797
BssT1I	CCWWGG	3 cut(s)	174, 491, 797
Bst2UI	CCWGG	2 cut(s)	213, 274
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	5 cut(s)	80, 244, 318, 336, 576
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	3 cut(s)	390, 435, 447
BstDSI	CCRYGG	1 cut(s)	797
BstENI	CCTNNNNNAGG	1 cut(s)	283
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	257
BstMAI	GTCTC	1 cut(s)	450
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 416, 669
BstNI	CCWGG	2 cut(s)	213, 274
BstNSI	RCATGY	1 cut(s)	419
BstPAI	GACNNNNGTC	1 cut(s)	48
BstSCI	CCNGG	2 cut(s)	211, 272
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	122, 422, 517
BstV2I	GAAGAC	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	663, 672
BtgI	CCRYGG	1 cut(s)	797
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	140
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	115, 276
CpoI	CGGWCCG	1 cut(s)	115
CseI	GACGC	1 cut(s)	746
CsiI	ACCWGGT	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	624
CspCI	CAANNNNNGTGG	2 cut(s)	476, 511
CspI	CGGWCCG	1 cut(s)	115
CviAII	CATG	4 cut(s)	359, 416, 605, 798
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	3 cut(s)	390, 435, 447
DraI	TTTAAA	1 cut(s)	766
EaeI	YGGCCR	1 cut(s)	670
Eam1104I	CTCTTC	5 cut(s)	80, 244, 318, 336, 576
EarI	CTCTTC	5 cut(s)	80, 244, 318, 336, 576
Eco130I	CCWWGG	3 cut(s)	174, 491, 797
Eco47I	GGWCC	2 cut(s)	115, 276
Eco47III	AGCGCT	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	141, 204
Eco88I	CYCGRG	1 cut(s)	698
EcoNI	CCTNNNNNAGG	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	276
EcoRII	CCWGG	2 cut(s)	211, 272
EcoT14I	CCWWGG	3 cut(s)	174, 491, 797
ErhI	CCWWGG	3 cut(s)	174, 491, 797
FaeI	CATG	4 cut(s)	362, 419, 608, 801
FaiI	YATR	7 cut(s)	62, 203, 284, 360, 417, 606, 799
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	4 cut(s)	358, 415, 604, 797
Fnu4HI	GCNGC	4 cut(s)	111, 411, 531, 673
Fsp4HI	GCNGC	4 cut(s)	111, 411, 531, 673
FspBI	CTAG	2 cut(s)	53, 338
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	4 cut(s)	111, 411, 531, 673
GsuI	CTGGAG	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	663, 672
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	1 cut(s)	746
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	4 cut(s)	362, 419, 608, 801
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	3 cut(s)	322, 334, 537
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	3 cut(s)	344, 629, 764
Hpy166II	GTNNAC	2 cut(s)	352, 498
Hpy188I	TCNGA	6 cut(s)	142, 160, 391, 450, 694, 736
Hpy188III	TCNNGA	6 cut(s)	53, 84, 317, 338, 371, 599
Hpy8I	GTNNAC	2 cut(s)	352, 498
HpyAV	CCTTC	3 cut(s)	90, 165, 743
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	5 cut(s)	127, 134, 410, 533, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 416, 669
HpyF3I	CTNAG	3 cut(s)	390, 435, 447
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	4 cut(s)	362, 419, 608, 801
HspAI	GCGC	1 cut(s)	255
Kpn2I	TCCGGA	1 cut(s)	370
LguI	GCTCTTC	4 cut(s)	80, 318, 336, 576
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	3 cut(s)	122, 422, 517
LweI	GCATC	1 cut(s)	397
MabI	ACCWGGT	1 cut(s)	272
MaeI	CTAG	2 cut(s)	53, 338
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	2 cut(s)	207, 265
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	2 cut(s)	19, 440
MlyI	GAGTC	3 cut(s)	328, 331, 546
MmeI	TCCRAC	1 cut(s)	765
MnlI	CCTC	8 cut(s)	208, 245, 279, 289, 369, 569, 575, 694
MroI	TCCGGA	1 cut(s)	370
MroXI	GAANNNNTTC	4 cut(s)	74, 304, 366, 585
MseI	TTAA	5 cut(s)	189, 381, 399, 707, 765
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	213, 274
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	2 cut(s)	213, 274
MwoI	GCNNNNNNNGC	3 cut(s)	110, 416, 669
NcoI	CCATGG	1 cut(s)	797
NlaIII	CATG	4 cut(s)	362, 419, 608, 801
NlaIV	GGNNCC	1 cut(s)	180
NspI	RCATGY	1 cut(s)	419
PciSI	GCTCTTC	4 cut(s)	80, 318, 336, 576
PctI	GAATGC	1 cut(s)	433
PdmI	GAANNNNTTC	4 cut(s)	74, 304, 366, 585
PkrI	GCNGC	4 cut(s)	112, 412, 532, 674
PleI	GAGTC	3 cut(s)	328, 330, 545
PpsI	GAGTC	3 cut(s)	328, 330, 545
PpuMI	RGGWCCY	1 cut(s)	276
PshAI	GACNNNNGTC	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	276
Psp6I	CCWGG	2 cut(s)	211, 272
PspGI	CCWGG	2 cut(s)	211, 272
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	2 cut(s)	115, 276
PspPPI	RGGWCCY	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
RseI	CAYNNNNRTG	1 cut(s)	357
Rsr2I	CGGWCCG	1 cut(s)	115
RsrII	CGGWCCG	1 cut(s)	115
SapI	GCTCTTC	4 cut(s)	80, 318, 336, 576
SaqAI	TTAA	5 cut(s)	189, 381, 399, 707, 765
SatI	GCNGC	4 cut(s)	111, 411, 531, 673
Sau96I	GGNCC	2 cut(s)	115, 276
SchI	GAGTC	3 cut(s)	328, 331, 546
ScrFI	CCNGG	2 cut(s)	213, 274
SduI	GDGCHC	1 cut(s)	198
SexAI	ACCWGGT	1 cut(s)	272
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	261
SfiI	GGCCNNNNNGGCC	1 cut(s)	669
SinI	GGWCC	2 cut(s)	115, 276
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	2 cut(s)	19, 440
SsiI	CCGC	3 cut(s)	113, 118, 673
SspMI	CTAG	2 cut(s)	53, 338
StyD4I	CCNGG	2 cut(s)	211, 272
StyI	CCWWGG	3 cut(s)	174, 491, 797
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	1 cut(s)	332
TasI	AATT	2 cut(s)	19, 440
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	1 cut(s)	675
Tru1I	TTAA	5 cut(s)	189, 381, 399, 707, 765
Tru9I	TTAA	5 cut(s)	189, 381, 399, 707, 765
TscAI	CASTG	1 cut(s)	651
TseI	GCWGC	3 cut(s)	110, 410, 530
TspDTI	ATGAA	4 cut(s)	231, 375, 588, 762
TspRI	CASTG	1 cut(s)	651
VpaK11BI	GGWCC	2 cut(s)	115, 276
XagI	CCTNNNNNAGG	1 cut(s)	283
XbaI	TCTAGA	2 cut(s)	52, 337
XceI	RCATGY	1 cut(s)	419
XmnI	GAANNNNTTC	4 cut(s)	74, 304, 366, 585
XspI	CTAG	2 cut(s)	53, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.