Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0013651

Physical Location & Seq

Genomic Coordinates Forward (+)

35667791 .. 35668099

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0324900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAAGAGGTCAATTGTATTGAACAACTACGAGTTAGCAAGAGTGCATTCAGGAGGCTATGTGAGATTTTACAAGGAAAGGGTGAACTAGTTCGTACAAAAAATGTTTCGATTGAAGAATTAGTAGCTACATTTCTAGATATACTTTCTAACAATGTGAAGTACAGAAAAATTGGTTTTATCTATTATCTTTCTAAGCAAACAGTTAGTCGGCAATTGCATAACGTGTTGTATGCAATAATGAGAATAAGTAAGGAATACTTGAAATTACAGTCATCTGGCATTGGTAATTCAAAAAGAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

102

Amino Acids

11.86

Weight (kDa)

9.73

Isoelectric Point (pI)

59.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8040	PF26138	3 - 81	4.2e-19	Domain of unknown function (DUF8040)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013651)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02340 FvH4_4g02340
malus_domestica	MD13G1205400.v1.1 MD16G1207100.v1.1
prunus_persica	Prupe.1G028000_v2.0.a1 Prupe.1G028000_v2.0.a1 Prupe.1G028000_v2.0.a1 Prupe.1G028000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0389721
rosa_laevigata	RLG00000009960
rosa_multiflora	Rmu_sc0003144.1_g000010
rosa_roxburghii	Rroxscaffold_5G00335720
rosa_rugosa	Rorug03G0324900
rosa_samantha	Rh4AG029800 Rh4BG022900 Rh4CG031600 Rh4DG023200
rosa_wichuraiana	Rw4G002230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	97, 164
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	4 cut(s)	23, 116, 265, 294
AhlI	ACTAGT	1 cut(s)	88
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
Asp700I	GAANNNNTTC	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	95
BcuI	ACTAGT	1 cut(s)	88
BfaI	CTAG	2 cut(s)	89, 137
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
BsmI	GAATGC	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	205, 273
BstDEI	CTNAG	1 cut(s)	195
Csp6I	GTAC	2 cut(s)	96, 163
CviJI	RGCY	2 cut(s)	58, 128
CviKI_1	RGCY	2 cut(s)	58, 128
CviQI	GTAC	2 cut(s)	96, 163
DdeI	CTNAG	1 cut(s)	195
FaiI	YATR	4 cut(s)	61, 143, 222, 234
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FspBI	CTAG	2 cut(s)	89, 137
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188III	TCNNGA	2 cut(s)	52, 137
Hpy8I	GTNNAC	1 cut(s)	86
HpyCH4III	ACNGT	2 cut(s)	205, 273
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	47, 220, 236
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	225
LpnPI	CCDG	2 cut(s)	37, 264
MaeI	CTAG	2 cut(s)	89, 137
MaeII	ACGT	1 cut(s)	225
MboII	GAAGA	2 cut(s)	17, 128
MfeI	CAATTG	2 cut(s)	13, 215
MluCI	AATT	6 cut(s)	13, 119, 171, 215, 266, 289
MnlI	CCTC	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	90
MunI	CAATTG	2 cut(s)	13, 215
Mva1269I	GAATGC	1 cut(s)	47
PctI	GAATGC	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	90
RsaI	GTAC	2 cut(s)	97, 164
RsaNI	GTAC	2 cut(s)	96, 163
SetI	ASST	3 cut(s)	12, 130, 228
SgeI	CNNG	9 cut(s)	44, 52, 64, 86, 101, 149, 238, 274, 291
SpeI	ACTAGT	1 cut(s)	88
Sse9I	AATT	6 cut(s)	13, 119, 171, 215, 266, 289
SspMI	CTAG	2 cut(s)	89, 137
TaaI	ACNGT	2 cut(s)	205, 273
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	110
TasI	AATT	6 cut(s)	13, 119, 171, 215, 266, 289
TatI	WGTACW	1 cut(s)	162
XbaI	TCTAGA	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	2 cut(s)	89, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.