zinc finger binding to DNA consensus sequence [AT]GATA[AG]
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g05580 FvH4_4g05580 FvH4_4g05580 FvH4_4g05580 FvH4_4g05580 FvH4_4g05580 FvH4_4g05580 FvH4_4g05580 |
| rosa_chinensis | RchiOBHm_Chr4g0396691 |
| rosa_laevigata | RLG00000009509 |
| rosa_multiflora | Rmu_sc0006586.1_g000008 |
| rosa_roxburghii | Rroxscaffold_5G00341540 |
| rosa_rugosa | Rorug03G0347800 Rorug03G0347900 |
| rosa_samantha | Rh4AG071300 Rh4BG069300 Rh4CG077100 Rh4DG066500 |
| rosa_wichuraiana | Rw4G005700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1518, 2070 |
| AatII | GACGTC | 1 cut(s) | 48 |
| Acc16I | TGCGCA | 1 cut(s) | 3130 |
| AccB1I | GGYRCC | 2 cut(s) | 317, 2321 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3543 |
| AccBSI | CCGCTC | 1 cut(s) | 2929 |
| AccI | GTMKAC | 1 cut(s) | 1901 |
| AccII | CGCG | 1 cut(s) | 2165 |
| AccIII | TCCGGA | 1 cut(s) | 1786 |
| AclWI | GGATC | 1 cut(s) | 3783 |
| AcoI | YGGCCR | 2 cut(s) | 30, 2361 |
| AcsI | RAATTY | 8 cut(s) | 1229, 1637, 1781, 2189, 2297, 2948, 3293, 3767 |
| AcuI | CTGAAG | 2 cut(s) | 3549, 3672 |
| AcyI | GRCGYC | 2 cut(s) | 45, 2322 |
| AdeI | CACNNNGTG | 6 cut(s) | 524, 579, 1226, 1627, 1778, 2179 |
| AfaI | GTAC | 4 cut(s) | 2392, 3461, 3649, 3764 |
| AjnI | CCWGG | 5 cut(s) | 321, 987, 2375, 2458, 3346 |
| AleI | CACNNNNGTG | 2 cut(s) | 911, 3045 |
| Alw21I | GWGCWC | 9 cut(s) | 214, 518, 1484, 1598, 2036, 2150, 2372, 2630, 3281 |
| Alw26I | GTCTC | 2 cut(s) | 2909, 2987 |
| Alw44I | GTGCAC | 2 cut(s) | 514, 2368 |
| AlwI | GGATC | 1 cut(s) | 3783 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 310, 955, 1102, 1510, 2062, 2821 |
| Aor13HI | TCCGGA | 1 cut(s) | 1786 |
| AoxI | GGCC | 8 cut(s) | 30, 34, 1646, 2198, 2361, 2847, 3319, 3534 |
| ApaLI | GTGCAC | 2 cut(s) | 514, 2368 |
| ApoI | RAATTY | 8 cut(s) | 1229, 1637, 1781, 2189, 2297, 2948, 3293, 3767 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2329, 2361 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2690 |
| AspLEI | GCGC | 4 cut(s) | 374, 2167, 2324, 3131 |
| AsuC2I | CCSGG | 1 cut(s) | 168 |
| AsuHPI | GGTGA | 5 cut(s) | 457, 481, 505, 1235, 1787 |
| AsuNHI | GCTAGC | 1 cut(s) | 82 |
| AxyI | CCTNAGG | 1 cut(s) | 3235 |
| BaeGI | GKGCMC | 3 cut(s) | 322, 518, 2372 |
| BalI | TGGCCA | 1 cut(s) | 2363 |
| BanI | GGYRCC | 2 cut(s) | 317, 2321 |
| BauI | CACGAG | 3 cut(s) | 911, 1610, 2621 |
| BbsI | GAAGAC | 2 cut(s) | 999, 2433 |
| Bbv12I | GWGCWC | 9 cut(s) | 214, 518, 1484, 1598, 2036, 2150, 2372, 2630, 3281 |
| BbvCI | CCTCAGC | 2 cut(s) | 87, 3690 |
| BccI | CCATC | 5 cut(s) | 63, 927, 2440, 3063, 3406 |
| BceAI | ACGGC | 1 cut(s) | 48 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 892, 926, 2602, 2636, 3361, 3395 |
| BciT130I | CCWGG | 5 cut(s) | 323, 989, 2377, 2460, 3348 |
| BcnI | CCSGG | 1 cut(s) | 168 |
| BcoDI | GTCTC | 2 cut(s) | 2909, 2987 |
| BfaI | CTAG | 6 cut(s) | 60, 83, 779, 1485, 2037, 2789 |
| BfmI | CTRYAG | 3 cut(s) | 311, 3283, 3325 |
| BfoI | RGCGCY | 1 cut(s) | 2325 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 169 |
| BlpI | GCTNAGC | 2 cut(s) | 855, 2565 |
| BmcAI | AGTACT | 1 cut(s) | 3649 |
| Bme1390I | CCNGG | 6 cut(s) | 168, 323, 989, 2377, 2460, 3348 |
| BmrFI | CCNGG | 6 cut(s) | 168, 323, 989, 2377, 2460, 3348 |
| BmrI | ACTGGG | 4 cut(s) | 798, 1218, 1427, 1979 |
| BmsI | GCATC | 2 cut(s) | 1249, 1801 |
| BmtI | GCTAGC | 1 cut(s) | 86 |
| BmuI | ACTGGG | 4 cut(s) | 798, 1218, 1427, 1979 |
| BpiI | GAAGAC | 2 cut(s) | 999, 2433 |
| BpmI | CTGGAG | 1 cut(s) | 1256 |
| Bpu10I | CCTNAGC | 3 cut(s) | 87, 3690, 3755 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 855, 2565 |
| BpuEI | CTTGAG | 4 cut(s) | 1223, 1384, 1775, 1936 |
| BpuMI | CCSGG | 1 cut(s) | 168 |
| Bsa29I | ATCGAT | 1 cut(s) | 2520 |
| BsaHI | GRCGYC | 2 cut(s) | 45, 2322 |
| BsaI | GGTCTC | 1 cut(s) | 2987 |
| BsaWI | WCCGGW | 2 cut(s) | 1786, 3636 |
| Bse118I | RCCGGY | 1 cut(s) | 32 |
| Bse1I | ACTGG | 8 cut(s) | 15, 804, 1224, 1433, 1985, 2546, 2689, 3645 |
| Bse21I | CCTNAGG | 1 cut(s) | 3235 |
| Bse3DI | GCAATG | 9 cut(s) | 211, 218, 849, 2430, 2553, 2559, 3389, 3498, 3517 |
| BseAI | TCCGGA | 1 cut(s) | 1786 |
| BseBI | CCWGG | 5 cut(s) | 323, 989, 2377, 2460, 3348 |
| BseCI | ATCGAT | 1 cut(s) | 2520 |
| BseGI | GGATG | 4 cut(s) | 55, 2299, 3058, 3417 |
| BseMI | GCAATG | 9 cut(s) | 211, 218, 849, 2430, 2553, 2559, 3389, 3498, 3517 |
| BseMII | CTCAG | 9 cut(s) | 66, 78, 846, 1789, 2550, 2556, 2715, 3249, 3681 |
| BseNI | ACTGG | 8 cut(s) | 15, 804, 1224, 1433, 1985, 2546, 2689, 3645 |
| BseRI | GAGGAG | 2 cut(s) | 173, 2620 |
| BseSI | GKGCMC | 3 cut(s) | 322, 518, 2372 |
| BseYI | CCCAGC | 5 cut(s) | 1522, 2074, 2307, 3135, 3216 |
| BsgI | GTGCAG | 1 cut(s) | 416 |
| Bsh1236I | CGCG | 1 cut(s) | 2165 |
| BshFI | GGCC | 8 cut(s) | 32, 36, 1648, 2200, 2363, 2849, 3321, 3536 |
| BshNI | GGYRCC | 2 cut(s) | 317, 2321 |
| BshVI | ATCGAT | 1 cut(s) | 2520 |
| BsiHKAI | GWGCWC | 9 cut(s) | 214, 518, 1484, 1598, 2036, 2150, 2372, 2630, 3281 |
| BsiSI | CCGG | 5 cut(s) | 33, 155, 167, 1787, 3637 |
| BsmAI | GTCTC | 2 cut(s) | 2909, 2987 |
| BsmI | GAATGC | 1 cut(s) | 667 |
| BsnI | GGCC | 8 cut(s) | 32, 36, 1648, 2200, 2363, 2849, 3321, 3536 |
| Bso31I | GGTCTC | 1 cut(s) | 2987 |
| Bsp13I | TCCGGA | 1 cut(s) | 1786 |
| Bsp143I | GATC | 1 cut(s) | 3775 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 855, 2565 |
| Bsp19I | CCATGG | 2 cut(s) | 1045, 3720 |
| BspANI | GGCC | 8 cut(s) | 32, 36, 1648, 2200, 2363, 2849, 3321, 3536 |
| BspCNI | CTCAG | 9 cut(s) | 67, 79, 847, 1788, 2549, 2557, 2714, 3248, 3682 |
| BspDI | ATCGAT | 1 cut(s) | 2520 |
| BspEI | TCCGGA | 1 cut(s) | 1786 |
| BspFNI | CGCG | 1 cut(s) | 2165 |
| BspMAI | CTGCAG | 2 cut(s) | 315, 3287 |
| BspOI | GCTAGC | 1 cut(s) | 86 |
| BspPI | GGATC | 1 cut(s) | 3783 |
| BspQI | GCTCTTC | 3 cut(s) | 90, 443, 467 |
| BspT107I | GGYRCC | 2 cut(s) | 317, 2321 |
| BspTNI | GGTCTC | 1 cut(s) | 2987 |
| BsrBI | CCGCTC | 1 cut(s) | 2929 |
| BsrDI | GCAATG | 9 cut(s) | 211, 218, 849, 2430, 2553, 2559, 3389, 3498, 3517 |
| BsrFI | RCCGGY | 1 cut(s) | 32 |
| BsrI | ACTGG | 8 cut(s) | 15, 804, 1224, 1433, 1985, 2546, 2689, 3645 |
| BssAI | RCCGGY | 1 cut(s) | 32 |
| BssMI | GATC | 1 cut(s) | 3775 |
| BssNI | GRCGYC | 2 cut(s) | 45, 2322 |
| BssSI | CACGAG | 3 cut(s) | 911, 1610, 2621 |
| BssT1I | CCWWGG | 6 cut(s) | 261, 562, 1045, 2326, 3085, 3720 |
| Bst2BI | CACGAG | 3 cut(s) | 911, 1610, 2621 |
| Bst2UI | CCWGG | 5 cut(s) | 323, 989, 2377, 2460, 3348 |
| Bst4CI | ACNGT | 9 cut(s) | 730, 761, 1147, 1372, 1699, 2485, 2609, 2641, 3738 |
| Bst6I | CTCTTC | 6 cut(s) | 90, 375, 419, 443, 467, 3525 |
| BstACI | GRCGYC | 2 cut(s) | 45, 2322 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 229, 291, 664 |
| BstC8I | GCNNGC | 4 cut(s) | 34, 84, 149, 3120 |
| BstDSI | CCRYGG | 2 cut(s) | 1045, 3720 |
| BstF5I | GGATG | 4 cut(s) | 55, 2299, 3058, 3417 |
| BstFNI | CGCG | 1 cut(s) | 2165 |
| BstH2I | RGCGCY | 1 cut(s) | 2325 |
| BstHHI | GCGC | 4 cut(s) | 374, 2167, 2324, 3131 |
| BstKTI | GATC | 1 cut(s) | 3778 |
| BstMAI | GTCTC | 2 cut(s) | 2909, 2987 |
| BstMBI | GATC | 1 cut(s) | 3775 |
| BstNI | CCWGG | 5 cut(s) | 323, 989, 2377, 2460, 3348 |
| BstNSI | RCATGY | 3 cut(s) | 147, 151, 3750 |
| BstSCI | CCNGG | 6 cut(s) | 166, 321, 987, 2375, 2458, 3346 |
| BstSFI | CTRYAG | 3 cut(s) | 311, 3283, 3325 |
| BstSLI | GKGCMC | 3 cut(s) | 322, 518, 2372 |
| BstUI | CGCG | 1 cut(s) | 2165 |
| BstV2I | GAAGAC | 2 cut(s) | 999, 2433 |
| BstX2I | RGATCY | 1 cut(s) | 3775 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 713, 2288, 3047 |
| BstYI | RGATCY | 1 cut(s) | 3775 |
| Bsu15I | ATCGAT | 1 cut(s) | 2520 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3235 |
| BsuRI | GGCC | 8 cut(s) | 32, 36, 1648, 2200, 2363, 2849, 3321, 3536 |
| BsuTUI | ATCGAT | 1 cut(s) | 2520 |
| BtgI | CCRYGG | 2 cut(s) | 1045, 3720 |
| BtsCI | GGATG | 4 cut(s) | 55, 2299, 3058, 3417 |
| BtsI | GCAGTG | 9 cut(s) | 551, 996, 1290, 1471, 1842, 2023, 2318, 2457, 3009 |
| Cac8I | GCNNGC | 4 cut(s) | 34, 84, 149, 3120 |
| CaiI | CAGNNNCTG | 6 cut(s) | 310, 955, 1102, 1510, 2062, 2821 |
| CfoI | GCGC | 4 cut(s) | 374, 2167, 2324, 3131 |
| Cfr10I | RCCGGY | 1 cut(s) | 32 |
| ClaI | ATCGAT | 1 cut(s) | 2520 |
| CseI | GACGC | 1 cut(s) | 2870 |
| Csp6I | GTAC | 4 cut(s) | 2391, 3460, 3648, 3763 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3054, 3089 |
| CviQI | GTAC | 4 cut(s) | 2391, 3460, 3648, 3763 |
| DinI | GGCGCC | 1 cut(s) | 2323 |
| DpnI | GATC | 1 cut(s) | 3777 |
| DpnII | GATC | 1 cut(s) | 3775 |
| DraIII | CACNNNGTG | 6 cut(s) | 524, 579, 1226, 1627, 1778, 2179 |
| EaeI | YGGCCR | 2 cut(s) | 30, 2361 |
| Eam1104I | CTCTTC | 6 cut(s) | 90, 375, 419, 443, 467, 3525 |
| EarI | CTCTTC | 6 cut(s) | 90, 375, 419, 443, 467, 3525 |
| EciI | GGCGGA | 1 cut(s) | 3424 |
| Ecl136II | GAGCTC | 7 cut(s) | 212, 1482, 1596, 2034, 2148, 2628, 3279 |
| Eco130I | CCWWGG | 6 cut(s) | 261, 562, 1045, 2326, 3085, 3720 |
| Eco147I | AGGCCT | 1 cut(s) | 3321 |
| Eco31I | GGTCTC | 1 cut(s) | 2987 |
| Eco32I | GATATC | 1 cut(s) | 111 |
| Eco53kI | GAGCTC | 7 cut(s) | 212, 1482, 1596, 2034, 2148, 2628, 3279 |
| Eco57I | CTGAAG | 2 cut(s) | 3549, 3672 |
| Eco81I | CCTNAGG | 1 cut(s) | 3235 |
| EcoICRI | GAGCTC | 7 cut(s) | 212, 1482, 1596, 2034, 2148, 2628, 3279 |
| EcoO109I | RGGNCCY | 7 cut(s) | 557, 1441, 1605, 2157, 2775, 3416, 3716 |
| EcoRII | CCWGG | 5 cut(s) | 321, 987, 2375, 2458, 3346 |
| EcoRV | GATATC | 1 cut(s) | 111 |
| EcoT14I | CCWWGG | 6 cut(s) | 261, 562, 1045, 2326, 3085, 3720 |
| EcoT22I | ATGCAT | 2 cut(s) | 149, 3748 |
| EgeI | GGCGCC | 1 cut(s) | 2323 |
| EheI | GGCGCC | 1 cut(s) | 2323 |
| ErhI | CCWWGG | 6 cut(s) | 261, 562, 1045, 2326, 3085, 3720 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2380, 2412 |
| FauI | CCCGC | 5 cut(s) | 287, 335, 543, 3677, 3708 |
| FblI | GTMKAC | 1 cut(s) | 1901 |
| FokI | GGATG | 4 cut(s) | 42, 2306, 3065, 3424 |
| FseI | GGCCGGCC | 1 cut(s) | 36 |
| FspBI | CTAG | 6 cut(s) | 60, 83, 779, 1485, 2037, 2789 |
| FspI | TGCGCA | 1 cut(s) | 3130 |
| GlaI | GCGC | 4 cut(s) | 373, 2166, 2323, 3130 |
| GsaI | CCCAGC | 5 cut(s) | 1526, 2078, 2311, 3139, 3220 |
| GsuI | CTGGAG | 1 cut(s) | 1256 |
| HaeII | RGCGCY | 1 cut(s) | 2325 |
| HaeIII | GGCC | 8 cut(s) | 32, 36, 1648, 2200, 2363, 2849, 3321, 3536 |
| HapII | CCGG | 5 cut(s) | 33, 155, 167, 1787, 3637 |
| HgaI | GACGC | 1 cut(s) | 2870 |
| HhaI | GCGC | 4 cut(s) | 374, 2167, 2324, 3131 |
| Hin1I | GRCGYC | 2 cut(s) | 45, 2322 |
| Hin6I | GCGC | 4 cut(s) | 372, 2165, 2322, 3129 |
| HinP1I | GCGC | 4 cut(s) | 372, 2165, 2322, 3129 |
| HinfI | GANTC | 9 cut(s) | 385, 538, 736, 1167, 1358, 1719, 1910, 2699, 3524 |
| HpaII | CCGG | 5 cut(s) | 33, 155, 167, 1787, 3637 |
| HphI | GGTGA | 5 cut(s) | 457, 481, 505, 1235, 1787 |
| Hpy166II | GTNNAC | 4 cut(s) | 516, 1902, 2370, 3496 |
| Hpy188I | TCNGA | 5 cut(s) | 1980, 2539, 2664, 3425, 3529 |
| Hpy8I | GTNNAC | 4 cut(s) | 516, 1902, 2370, 3496 |
| Hpy99I | CGWCG | 2 cut(s) | 47, 140 |
| HpyCH4III | ACNGT | 9 cut(s) | 730, 761, 1147, 1372, 1699, 2485, 2609, 2641, 3738 |
| HpyCH4IV | ACGT | 3 cut(s) | 45, 650, 2393 |
| HpySE526I | ACGT | 3 cut(s) | 45, 650, 2393 |
| Hsp92I | GRCGYC | 2 cut(s) | 45, 2322 |
| HspAI | GCGC | 4 cut(s) | 372, 2165, 2322, 3129 |
| KasI | GGCGCC | 1 cut(s) | 2321 |
| KflI | GGGWCCC | 4 cut(s) | 557, 1605, 2157, 3416 |
| Kpn2I | TCCGGA | 1 cut(s) | 1786 |
| KroI | GCCGGC | 1 cut(s) | 32 |
| KroNI | GCCGGC | 1 cut(s) | 34 |
| Kzo9I | GATC | 1 cut(s) | 3775 |
| LguI | GCTCTTC | 3 cut(s) | 90, 443, 467 |
| LweI | GCATC | 2 cut(s) | 1249, 1801 |
| MaeI | CTAG | 6 cut(s) | 60, 83, 779, 1485, 2037, 2789 |
| MaeII | ACGT | 3 cut(s) | 45, 650, 2393 |
| MaeIII | GTNAC | 6 cut(s) | 6, 410, 437, 461, 2696, 2975 |
| MalI | GATC | 1 cut(s) | 3777 |
| MbiI | CCGCTC | 1 cut(s) | 2929 |
| MboI | GATC | 1 cut(s) | 3775 |
| MflI | RGATCY | 1 cut(s) | 3775 |
| MlsI | TGGCCA | 1 cut(s) | 2363 |
| MluNI | TGGCCA | 1 cut(s) | 2363 |
| Mly113I | GGCGCC | 1 cut(s) | 2322 |
| MlyI | GAGTC | 6 cut(s) | 394, 532, 1352, 1904, 2693, 3533 |
| MmeI | TCCRAC | 3 cut(s) | 138, 3145, 3541 |
| Mox20I | TGGCCA | 1 cut(s) | 2363 |
| Mph1103I | ATGCAT | 2 cut(s) | 149, 3748 |
| MroI | TCCGGA | 1 cut(s) | 1786 |
| MroNI | GCCGGC | 1 cut(s) | 32 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2690 |
| MscI | TGGCCA | 1 cut(s) | 2363 |
| MslI | CAYNNNNRTG | 6 cut(s) | 255, 911, 1034, 2900, 3045, 3111 |
| Msp20I | TGGCCA | 1 cut(s) | 2363 |
| MspA1I | CMGCKG | 8 cut(s) | 1102, 1249, 1510, 1654, 1801, 2062, 2821, 2968 |
| MspI | CCGG | 5 cut(s) | 33, 155, 167, 1787, 3637 |
| MspR9I | CCNGG | 6 cut(s) | 168, 323, 989, 2377, 2460, 3348 |
| Mva1269I | GAATGC | 1 cut(s) | 667 |
| MvaI | CCWGG | 5 cut(s) | 323, 989, 2377, 2460, 3348 |
| MvnI | CGCG | 1 cut(s) | 2165 |
| NaeI | GCCGGC | 1 cut(s) | 34 |
| NarI | GGCGCC | 1 cut(s) | 2322 |
| NciI | CCSGG | 1 cut(s) | 168 |
| NcoI | CCATGG | 2 cut(s) | 1045, 3720 |
| NdeII | GATC | 1 cut(s) | 3775 |
| NgoMIV | GCCGGC | 1 cut(s) | 32 |
| NheI | GCTAGC | 1 cut(s) | 82 |
| NmeAIII | GCCGAG | 3 cut(s) | 220, 258, 1898 |
| NmuCI | GTSAC | 5 cut(s) | 6, 410, 437, 461, 2696 |
| NsbI | TGCGCA | 1 cut(s) | 3130 |
| NsiI | ATGCAT | 2 cut(s) | 149, 3748 |
| NspI | RCATGY | 3 cut(s) | 147, 151, 3750 |
| OliI | CACNNNNGTG | 2 cut(s) | 911, 3045 |
| PaeI | GCATGC | 1 cut(s) | 151 |
| PasI | CCCWGGG | 1 cut(s) | 322 |
| PceI | AGGCCT | 1 cut(s) | 3321 |
| PciSI | GCTCTTC | 3 cut(s) | 90, 443, 467 |
| PctI | GAATGC | 1 cut(s) | 667 |
| PdiI | GCCGGC | 1 cut(s) | 34 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2690 |
| PfeI | GAWTC | 3 cut(s) | 736, 1167, 1719 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3543 |
| PleI | GAGTC | 6 cut(s) | 393, 532, 1352, 1904, 2693, 3532 |
| PluTI | GGCGCC | 1 cut(s) | 2325 |
| PpsI | GAGTC | 6 cut(s) | 393, 532, 1352, 1904, 2693, 3532 |
| PpuMI | RGGWCCY | 7 cut(s) | 557, 1441, 1605, 2157, 2775, 3416, 3716 |
| PsiI | TTATAA | 2 cut(s) | 1518, 2070 |
| Psp124BI | GAGCTC | 7 cut(s) | 214, 1484, 1598, 2036, 2150, 2630, 3281 |
| Psp5II | RGGWCCY | 7 cut(s) | 557, 1441, 1605, 2157, 2775, 3416, 3716 |
| Psp6I | CCWGG | 5 cut(s) | 321, 987, 2375, 2458, 3346 |
| PspFI | CCCAGC | 5 cut(s) | 1522, 2074, 2307, 3135, 3216 |
| PspGI | CCWGG | 5 cut(s) | 321, 987, 2375, 2458, 3346 |
| PspPPI | RGGWCCY | 7 cut(s) | 557, 1441, 1605, 2157, 2775, 3416, 3716 |
| PstI | CTGCAG | 2 cut(s) | 315, 3287 |
| PstNI | CAGNNNCTG | 6 cut(s) | 310, 955, 1102, 1510, 2062, 2821 |
| PsuI | RGATCY | 1 cut(s) | 3775 |
| PvuII | CAGCTG | 8 cut(s) | 1102, 1249, 1510, 1654, 1801, 2062, 2821, 2968 |
| RigI | GGCCGGCC | 1 cut(s) | 36 |
| RsaI | GTAC | 4 cut(s) | 2392, 3461, 3649, 3764 |
| RsaNI | GTAC | 4 cut(s) | 2391, 3460, 3648, 3763 |
| RseI | CAYNNNNRTG | 6 cut(s) | 255, 911, 1034, 2900, 3045, 3111 |
| SacI | GAGCTC | 7 cut(s) | 214, 1484, 1598, 2036, 2150, 2630, 3281 |
| SapI | GCTCTTC | 3 cut(s) | 90, 443, 467 |
| Sau3AI | GATC | 1 cut(s) | 3775 |
| SbfI | CCTGCAGG | 2 cut(s) | 315, 3287 |
| ScaI | AGTACT | 1 cut(s) | 3649 |
| SchI | GAGTC | 6 cut(s) | 394, 532, 1352, 1904, 2693, 3533 |
| ScrFI | CCNGG | 6 cut(s) | 168, 323, 989, 2377, 2460, 3348 |
| SdaI | CCTGCAGG | 2 cut(s) | 315, 3287 |
| SfaNI | GCATC | 2 cut(s) | 1249, 1801 |
| SfcI | CTRYAG | 3 cut(s) | 311, 3283, 3325 |
| SfoI | GGCGCC | 1 cut(s) | 2323 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 255, 911, 1034, 2900, 3045, 3111 |
| SmlI | CTYRAG | 4 cut(s) | 1202, 1399, 1754, 1951 |
| SmoI | CTYRAG | 4 cut(s) | 1202, 1399, 1754, 1951 |
| SphI | GCATGC | 1 cut(s) | 151 |
| Sse8387I | CCTGCAGG | 2 cut(s) | 315, 3287 |
| SseBI | AGGCCT | 1 cut(s) | 3321 |
| SspDI | GGCGCC | 1 cut(s) | 2321 |
| SspI | AATATT | 1 cut(s) | 711 |
| SspMI | CTAG | 6 cut(s) | 60, 83, 779, 1485, 2037, 2789 |
| SstI | GAGCTC | 7 cut(s) | 214, 1484, 1598, 2036, 2150, 2630, 3281 |
| StuI | AGGCCT | 1 cut(s) | 3321 |
| StyD4I | CCNGG | 6 cut(s) | 166, 321, 987, 2375, 2458, 3346 |
| StyI | CCWWGG | 6 cut(s) | 261, 562, 1045, 2326, 3085, 3720 |
| TaaI | ACNGT | 9 cut(s) | 730, 761, 1147, 1372, 1699, 2485, 2609, 2641, 3738 |
| TaiI | ACGT | 3 cut(s) | 48, 653, 2396 |
| TaqI | TCGA | 3 cut(s) | 138, 1367, 2520 |
| TatI | WGTACW | 1 cut(s) | 3647 |
| TauI | GCSGC | 8 cut(s) | 616, 1210, 1472, 1651, 1762, 2024, 2203, 2929 |
| TfiI | GAWTC | 3 cut(s) | 736, 1167, 1719 |
| TseFI | GTSAC | 5 cut(s) | 6, 410, 437, 461, 2696 |
| Tsp45I | GTSAC | 5 cut(s) | 6, 410, 437, 461, 2696 |
| TspDTI | ATGAA | 8 cut(s) | 1328, 1880, 1910, 2310, 2510, 2542, 2814, 3069 |
| TspGWI | ACGGA | 3 cut(s) | 124, 583, 832 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3543 |
| VneI | GTGCAC | 2 cut(s) | 514, 2368 |
| XapI | RAATTY | 8 cut(s) | 1229, 1637, 1781, 2189, 2297, 2948, 3293, 3767 |
| XceI | RCATGY | 3 cut(s) | 147, 151, 3750 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 1231, 1870, 2443, 3652 |
| XmiI | GTMKAC | 1 cut(s) | 1901 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2690 |
| XspI | CTAG | 6 cut(s) | 60, 83, 779, 1485, 2037, 2789 |
| ZraI | GACGTC | 1 cut(s) | 46 |
| ZrmI | AGTACT | 1 cut(s) | 3649 |
| Zsp2I | ATGCAT | 2 cut(s) | 149, 3748 |