Rw4G005700

GATA transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
11429546 .. 11436186
6641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G005700.1

Sequence Viewer

Length: 3048 bp
ATGGTGTCACTGGACCCAGATGACTTCTTGGCCGGCCTTGCCGATGACCCGGACTATCCCAGCCGTCCATTTCCGGCAACAGAGAACCTAGCTGAGGAAGAAGAGCTGGAATGGCTATCCAACAAGGACGTGTTTCCGGCCATCGAAACCTGCATGCTGACGGAGGAGCCACCAAAAAAGGCTATGGCCAATGCCGAGCAGGGGAATCCGGTCTCTGTCTCGGTTGTTAAAGCAAGCATTGGAGGAGGTGGAGCACTGCTATTGCCGAGCAGGAAAACAAAGGATGAGAGTGTCAAAGTGAAGAGTATGAGAGTTTGCGCATATTGCGGGGTTACACAGACCCCACAGTGGCCGGAGGGTCCCTTGGGGATATGTAATGCCTGCGGTTTTAGCTACAAGTCCGGGCGGCTTTGCACTGAAGACAGTCCCAAAGTGCAGAGCATTAAGAGTGACAAGGTGAAGAGCATTAAGAGTGACAAGGTGAATGGAATTAAGAGTGACAAGGTGAAGACCATTAAGAGAAAGTGCACACATTGTGGGATTGCACAGACTCCACAGTGGCGGTTGGGTCCCCTTGGACCGCAGACCCTGTGTAATGCTTGTGGGGTTAGGTACAAGTCTGGGAGGCTTTGCCCCGAATACCGCCCTGCAAATAGCCCTACGTTCTCACAGGAGTTGCATTCGAATATGCACAGGAAGGTAATGGAGATCAGGAAGCAAATCTATGGGAATGAGGGGACGGTGGTGAAACCTGTGGATAAATGTGCCGCCACCACTGCCCTAGAGAAGATGAAGAAAGACATGTTCCCAACTGTCGTAACAGTGGAGCAACCAAGAAGAAGTGTCATTGCTGAGCAGCAGAGCCCTGTTTCGGTGCTTGAAAACAGCACAAACAGCAGCATCACCCTCAAGCCCCACCAACCCCCAAGCAAATTTCTGAGGGAGCAGCAGCTGTTCTGTAACCAACCTAACAATAAGCACAACCAGGAAGACACTGCCTCAGTGGAAATTAAGAGAAACATCATCCTCATGAGTTCCTGTGGGACCCTCGAGCTGCCTTATAAAGCGCCAAGCGAAGTTTTGGGGCAGCAGCAGCTGTTTAGTTGCCAAACTACCAGCAAACGCAGAAAGAAAAACATTGTTGAAATGAAGAATGAGGGAAACAATGCCACCCTCACGAGTTCCTGTGGGAACCTTGAGCCGCCCCACCAAGCGCCAAGTCAATTTCTGGAGCAGCACCAGCCTAACAACAAGTGCAACAAGAAACATACTGCCAAAGTGGAGATGACCATGAAACCTGTGGATATATGCAGCACCACCCTCATGAAGTCTAAGAAGGACTCATTACCGGCTATCGAAACATTGAATATATTGGAGCATTCAAGAGGCATTTTTATTGCTGAGCAGCAGAGCCCTGTAGTGGGGATTGCGGTAAATTGCCAGAATTGTGGTGCTGAACAGAGCCCGCAATGGTGGGAGGGTCCCCTTGGACCCAAAACCATATGTCTTTCCTGTGGGCTGGCCAAGTACACAGGCAGGCGGAAAAGAAGTATGTCTTTAGTTTCTAACAAGAAGCGCAAAAAGGAAGACATTGCGAAAGTGGAGATGGCAGTGAAACCTGGGGATAAATGCACAAACAGCACCACTGCCCTCATGAACTCCAAGAAAGACCCCTTACCGGCTGTCGGTACATCGAATATCTCAGAGCAACCAAGCGTCATTGTCATTGCTGAGCAGCAGAGCCCTGCATCTGTGCTTGAAAACAGCATAAGCAGCAGCATGATGCTCATGAGCTCCTCTGGGACTGTCAACCTGCACAACCAAGCCCCAAGCGAATTTCCGCCGCAGAACCAGTTTTTTGACCAAGCTAACAACAAGCCCAAAGTGAAAGACACTACCACAGTGGAGTTTGAGGGAAACAGCTCTACCCTCATGAGGTCCTCTGGGGCCCTTGAGCCGCTCCACCAAGCTTCAAACGAATTTCTGGACCAGCAGCAGCAAGCTAAGAACAAGCCCAACAAGAAAGACACTGCTAAAGTGGAGAGTGATGGAAGCAGCACCACCCTCATGAGCTCTTGTGGGACTAACAAACTGCCCCACCAAGCACATAGCGAATTTCTGGGGCAACAGCAGCTGTTTTGTAACCAAGCTAACAATGGGACCAAAAAGGAAAACACTGCCAAAGGGGAGAGTGAGGGGAAGTGCCAGAATTGTGGGGTTGAGCAGACCCGGAGTTGGTTGGGAAGTCCCCTTGGACCAAAACCCCTATGTCATGCCTGTGGGCTGGCTAAGTGCACGGCCGGCCAGCAAAGAAGTATTGCTGTGGAGGTTGGAAAACTGGCCTGTCCATCACCTGCCACGGGAGAGTTTACTAATTCAACTTGCACTTTTCCGGTTCTTGAAGAGTTCCATCTCTCGCAGAAACCAAGCGACATAGCCAATGCCGAGCAACAGAAACCTTTTTCAGTTCTTGAAAGCAGCACAAACAACAGCATAGCCCTCATGAGCTCCTGCAGGATAAAAATCCCCCACCGAGCCCGAAGCAAGGTCCTCCGTAGAAGAAGAAGCACAATTCCAGGGCAGCAAGTTGGGGTTGGAAAAAACTGTATGCAATGTGGAAAACAGACAAATAGGTGGCGGATGGGTCCCCTCGGACCCACAACTCTGTGTAATGCCTGTGGGAATAAGTATCAGCCCTTGTGGGGAAGAAGCGGCGTAACAGTGGACATTGCCAAAAACTGTCAGCATTGCGGGTCTGAAGAGACCACGCAATTGCTATTGTGTCCCCTTGGACCCAAAACCCTATGTACAGTCTGTTATCATTGGTTTAAAGCCAGTGCTGAAGTGGAGATTGAGAGAAAATGCCAGCATTGTGGGGCTGAGAAAACCCCGCTTTGGCGGTCAGGTCCCCTGGGTTCCAAAACGCTGTGTAATGCATGTGGGCTTAGGTGGTACAAATTCAGGGATCTTTGCCGAGACCGCTCTGCAAGTAGCCCAACTCTCTTGAGAGAGTTGCATTCGAATTGTTACAGGAATGTGCTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1015

Amino Acids

111.38

Weight (kDa)

9.04

Isoelectric Point (pI)

61.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 106 - 137 1.7e-06 GATA zinc finger
GATA PF00320 176 - 210 1.5e-12 GATA zinc finger
GATA PF00320 480 - 508 4.8e-07 GATA zinc finger
GATA PF00320 955 - 985 7.1e-14 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1062
AarI CACCTGC 1 cut(s) 2362
Acc16I TGCGCA 1 cut(s) 319
Acc36I ACCTGC 3 cut(s) 158, 1821, 2362
AccBSI CCGCTC 2 cut(s) 1960, 2982
AclWI GGATC 1 cut(s) 2973
AcoI YGGCCR 7 cut(s) 30, 138, 186, 350, 1521, 2298, 2302
AcsI RAATTY 5 cut(s) 932, 1835, 1979, 2114, 2957
AcuI CTGAAG 3 cut(s) 438, 2778, 2862
AdeI CACNNNGTG 1 cut(s) 536
AfaI GTAC 5 cut(s) 614, 1529, 1690, 2809, 2954
AflIII ACRYGT 2 cut(s) 129, 801
AgsI TTSAA 9 cut(s) 881, 1145, 1366, 1383, 1760, 1974, 2379, 2402, 2474
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 4 cut(s) 984, 1618, 2575, 2910
Alw21I GWGCWC 6 cut(s) 256, 530, 1796, 2075, 2297, 2510
Alw26I GTCTC 4 cut(s) 217, 223, 2756, 2970
Alw44I GTGCAC 2 cut(s) 526, 2293
AlwI GGATC 1 cut(s) 2973
AlwNI CAGNNNCTG 4 cut(s) 589, 952, 1096, 2134
Ama87I CYCGRG 1 cut(s) 1049
ApaI GGGCCC 1 cut(s) 1951
ApaLI GTGCAC 2 cut(s) 526, 2293
ApoI RAATTY 5 cut(s) 932, 1835, 1979, 2114, 2957
AspLEI GCGC 4 cut(s) 320, 1069, 1216, 1578
AsuC2I CCSGG 3 cut(s) 50, 403, 2230
AsuHPI GGTGA 6 cut(s) 469, 493, 517, 757, 895, 2343
AsuII TTCGAA 2 cut(s) 683, 3020
AvaI CYCGRG 1 cut(s) 1049
BaeGI GKGCMC 3 cut(s) 530, 1951, 2297
BalI TGGCCA 2 cut(s) 188, 1523
BanII GRGCYC 9 cut(s) 866, 1415, 1466, 1745, 1796, 1951, 2075, 2510, 2539
BauI CACGAG 1 cut(s) 1177
BbsI GAAGAC 4 cut(s) 426, 515, 996, 1593
Bbv12I GWGCWC 6 cut(s) 256, 530, 1796, 2075, 2297, 2510
BbvCI CCTCAGC 1 cut(s) 93
BccI CCATC 6 cut(s) 149, 1600, 2042, 2356, 2418, 2635
BceAI ACGGC 2 cut(s) 48, 2313
BciT130I CCWGG 4 cut(s) 986, 1620, 2577, 2912
BcnI CCSGG 3 cut(s) 50, 403, 2230
BcoDI GTCTC 4 cut(s) 217, 223, 2756, 2970
BfaI CTAG 2 cut(s) 89, 782
BfmI CTRYAG 2 cut(s) 1416, 2512
BfoI RGCGCY 2 cut(s) 1070, 1217
BfuAI ACCTGC 3 cut(s) 158, 1821, 2362
BlpI GCTNAGC 3 cut(s) 852, 1401, 1731
Bme1390I CCNGG 7 cut(s) 50, 403, 986, 1620, 2230, 2577, 2912
BmeT110I CYCGRG 1 cut(s) 1049
BmgBI CACGTC 1 cut(s) 130
BmrFI CCNGG 7 cut(s) 50, 403, 986, 1620, 2230, 2577, 2912
BmsI GCATC 3 cut(s) 909, 1757, 1773
BpiI GAAGAC 4 cut(s) 426, 515, 996, 1593
BpmI CTGGAG 1 cut(s) 1250
Bpu10I CCTNAGC 2 cut(s) 93, 2945
Bpu1102I GCTNAGC 3 cut(s) 852, 1401, 1731
Bpu14I TTCGAA 2 cut(s) 683, 3020
BpuEI CTTGAG 4 cut(s) 893, 1217, 1973, 3025
BpuMI CCSGG 3 cut(s) 50, 403, 2230
BsaBI GATNNNNATC 1 cut(s) 2522
BsaI GGTCTC 3 cut(s) 217, 2756, 2970
BsaWI WCCGGW 2 cut(s) 208, 2392
Bse118I RCCGGY 4 cut(s) 32, 1348, 1678, 2300
Bse1I ACTGG 4 cut(s) 15, 1852, 2343, 2835
Bse3DI GCAATG 7 cut(s) 846, 1475, 1590, 1725, 2618, 2727, 2746
Bse8I GATNNNNATC 1 cut(s) 2522
BseBI CCWGG 4 cut(s) 986, 1620, 2577, 2912
BseGI GGATG 3 cut(s) 289, 1023, 2646
BseJI GATNNNNATC 1 cut(s) 2522
BseMI GCAATG 7 cut(s) 846, 1475, 1590, 1725, 2618, 2727, 2746
BseMII CTCAG 8 cut(s) 84, 843, 929, 1014, 1392, 1716, 1722, 2871
BseNI ACTGG 4 cut(s) 15, 1852, 2343, 2835
BseRI GAGGAG 3 cut(s) 179, 258, 1786
BseSI GKGCMC 3 cut(s) 530, 1951, 2297
BseX3I CGGCCG 1 cut(s) 2298
BseYI CCCAGC 1 cut(s) 59
BsgI GTGCAG 2 cut(s) 455, 1799
Bsh1285I CGRYCG 1 cut(s) 2301
BsiEI CGRYCG 1 cut(s) 2301
BsiHKAI GWGCWC 6 cut(s) 256, 530, 1796, 2075, 2297, 2510
BsiHKCI CYCGRG 1 cut(s) 1049
BsmAI GTCTC 4 cut(s) 217, 223, 2756, 2970
BsmI GAATGC 3 cut(s) 679, 1378, 3016
Bso31I GGTCTC 3 cut(s) 217, 2756, 2970
BsoBI CYCGRG 1 cut(s) 1049
Bsp119I TTCGAA 2 cut(s) 683, 3020
Bsp120I GGGCCC 1 cut(s) 1947
Bsp1407I TGTACA 1 cut(s) 2807
Bsp143I GATC 2 cut(s) 708, 2965
Bsp1720I GCTNAGC 3 cut(s) 852, 1401, 1731
BspCNI CTCAG 8 cut(s) 85, 844, 930, 1013, 1393, 1715, 1723, 2872
BspHI TCATGA 7 cut(s) 1029, 1323, 1653, 1788, 1932, 2067, 2502
BspMAI CTGCAG 1 cut(s) 2516
BspMI ACCTGC 3 cut(s) 158, 1821, 2362
BspPI GGATC 1 cut(s) 2973
BspQI GCTCTTC 2 cut(s) 96, 455
BspT104I TTCGAA 2 cut(s) 683, 3020
BspTNI GGTCTC 3 cut(s) 217, 2756, 2970
BsrBI CCGCTC 2 cut(s) 1960, 2982
BsrDI GCAATG 7 cut(s) 846, 1475, 1590, 1725, 2618, 2727, 2746
BsrFI RCCGGY 4 cut(s) 32, 1348, 1678, 2300
BsrGI TGTACA 1 cut(s) 2807
BsrI ACTGG 4 cut(s) 15, 1852, 2343, 2835
BssAI RCCGGY 4 cut(s) 32, 1348, 1678, 2300
BssMI GATC 2 cut(s) 708, 2965
BssSI CACGAG 1 cut(s) 1177
BssT1I CCWWGG 5 cut(s) 363, 574, 1486, 2251, 2788
Bst2BI CACGAG 1 cut(s) 1177
Bst2UI CCWGG 4 cut(s) 986, 1620, 2577, 2912
Bst6I CTCTTC 5 cut(s) 96, 296, 455, 2397, 2754
BstAUI TGTACA 1 cut(s) 2807
BstBI TTCGAA 2 cut(s) 683, 3020
BstDSI CCRYGG 1 cut(s) 2358
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 3 cut(s) 289, 1023, 2646
BstH2I RGCGCY 2 cut(s) 1070, 1217
BstHHI GCGC 4 cut(s) 320, 1069, 1216, 1578
BstKTI GATC 2 cut(s) 711, 2968
BstMAI GTCTC 4 cut(s) 217, 223, 2756, 2970
BstMBI GATC 2 cut(s) 708, 2965
BstMCI CGRYCG 1 cut(s) 2301
BstNI CCWGG 4 cut(s) 986, 1620, 2577, 2912
BstNSI RCATGY 3 cut(s) 157, 805, 2940
BstSCI CCNGG 7 cut(s) 48, 401, 984, 1618, 2228, 2575, 2910
BstSFI CTRYAG 2 cut(s) 1416, 2512
BstSLI GKGCMC 3 cut(s) 530, 1951, 2297
BstV2I GAAGAC 4 cut(s) 426, 515, 996, 1593
BstX2I RGATCY 1 cut(s) 2965
BstXI CCANNNNNNTGG 3 cut(s) 1448, 2213, 2873
BstYI RGATCY 1 cut(s) 2965
BstZI CGGCCG 1 cut(s) 2298
BtgI CCRYGG 1 cut(s) 2358
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 3 cut(s) 289, 1023, 2646
BtsI GCAGTG 7 cut(s) 254, 774, 993, 1617, 1644, 2028, 2175
BveI ACCTGC 3 cut(s) 158, 1821, 2362
CaiI CAGNNNCTG 4 cut(s) 589, 952, 1096, 2134
CciI TCATGA 7 cut(s) 1029, 1323, 1653, 1788, 1932, 2067, 2502
CfoI GCGC 4 cut(s) 320, 1069, 1216, 1578
Cfr10I RCCGGY 4 cut(s) 32, 1348, 1678, 2300
CseI GACGC 1 cut(s) 1705
Csp6I GTAC 5 cut(s) 613, 1528, 1689, 2808, 2953
CviQI GTAC 5 cut(s) 613, 1528, 1689, 2808, 2953
DpnI GATC 2 cut(s) 710, 2967
DpnII GATC 2 cut(s) 708, 2965
DraI TTTAAA 1 cut(s) 2830
DraIII CACNNNGTG 1 cut(s) 536
EaeI YGGCCR 7 cut(s) 30, 138, 186, 350, 1521, 2298, 2302
EagI CGGCCG 1 cut(s) 2298
Eam1104I CTCTTC 5 cut(s) 96, 296, 455, 2397, 2754
EarI CTCTTC 5 cut(s) 96, 296, 455, 2397, 2754
EciI GGCGGA 3 cut(s) 1555, 1830, 2653
Ecl136II GAGCTC 3 cut(s) 1794, 2073, 2508
EclXI CGGCCG 1 cut(s) 2298
Eco130I CCWWGG 5 cut(s) 363, 574, 1486, 2251, 2788
Eco24I GRGCYC 9 cut(s) 866, 1415, 1466, 1745, 1796, 1951, 2075, 2510, 2539
Eco31I GGTCTC 3 cut(s) 217, 2756, 2970
Eco52I CGGCCG 1 cut(s) 2298
Eco53kI GAGCTC 3 cut(s) 1794, 2073, 2508
Eco57I CTGAAG 3 cut(s) 438, 2778, 2862
Eco88I CYCGRG 1 cut(s) 1049
EcoICRI GAGCTC 3 cut(s) 1794, 2073, 2508
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoRII CCWGG 4 cut(s) 984, 1618, 2575, 2910
EcoT14I CCWWGG 5 cut(s) 363, 574, 1486, 2251, 2788
EcoT22I ATGCAT 1 cut(s) 2938
EcoT38I GRGCYC 9 cut(s) 866, 1415, 1466, 1745, 1796, 1951, 2075, 2510, 2539
ErhI CCWWGG 5 cut(s) 363, 574, 1486, 2251, 2788
FalI AAGNNNNNCTT 2 cut(s) 1540, 1572
FauI CCCGC 4 cut(s) 320, 1473, 2744, 2898
FauNDI CATATG 1 cut(s) 1502
FokI GGATG 3 cut(s) 296, 1010, 2653
FriOI GRGCYC 9 cut(s) 866, 1415, 1466, 1745, 1796, 1951, 2075, 2510, 2539
FseI GGCCGGCC 2 cut(s) 36, 2304
FspBI CTAG 2 cut(s) 89, 782
FspI TGCGCA 1 cut(s) 319
GlaI GCGC 4 cut(s) 319, 1068, 1215, 1577
GsaI CCCAGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 1250
HaeII RGCGCY 2 cut(s) 1070, 1217
HgaI GACGC 1 cut(s) 1705
HhaI GCGC 4 cut(s) 320, 1069, 1216, 1578
Hin6I GCGC 4 cut(s) 318, 1067, 1214, 1576
HinP1I GCGC 4 cut(s) 318, 1067, 1214, 1576
HincII GTYRAC 1 cut(s) 1810
HindII GTYRAC 1 cut(s) 1810
HindIII AAGCTT 1 cut(s) 1968
HinfI GANTC 3 cut(s) 205, 550, 1340
HphI GGTGA 6 cut(s) 469, 493, 517, 757, 895, 2343
Hpy166II GTNNAC 6 cut(s) 528, 1530, 1810, 2295, 2370, 2725
Hpy188I TCNGA 4 cut(s) 939, 1705, 2654, 2758
Hpy8I GTNNAC 6 cut(s) 528, 1530, 1810, 2295, 2370, 2725
HpyAV CCTTC 2 cut(s) 691, 1330
HpyCH4IV ACGT 2 cut(s) 129, 662
HpySE526I ACGT 2 cut(s) 129, 662
HspAI GCGC 4 cut(s) 318, 1067, 1214, 1576
KflI GGGWCCC 5 cut(s) 359, 569, 1044, 1481, 2645
KroI GCCGGC 2 cut(s) 32, 2300
KroNI GCCGGC 2 cut(s) 34, 2302
Kzo9I GATC 2 cut(s) 708, 2965
LguI GCTCTTC 2 cut(s) 96, 455
LmnI GCTCC 9 cut(s) 166, 251, 826, 943, 1231, 1375, 1799, 1965, 2513
LweI GCATC 3 cut(s) 909, 1757, 1773
MaeI CTAG 2 cut(s) 89, 782
MaeII ACGT 2 cut(s) 129, 662
MalI GATC 2 cut(s) 710, 2967
MbiI CCGCTC 2 cut(s) 1960, 2982
MboI GATC 2 cut(s) 708, 2965
MfeI CAATTG 1 cut(s) 2771
MflI RGATCY 1 cut(s) 2965
MlsI TGGCCA 2 cut(s) 188, 1523
MluNI TGGCCA 2 cut(s) 188, 1523
MlyI GAGTC 2 cut(s) 544, 1334
MmeI TCCRAC 3 cut(s) 144, 2311, 2575
Mox20I TGGCCA 2 cut(s) 188, 1523
Mph1103I ATGCAT 1 cut(s) 2938
MroNI GCCGGC 2 cut(s) 32, 2300
MscI TGGCCA 2 cut(s) 188, 1523
MseI TTAA 7 cut(s) 228, 444, 468, 492, 516, 1011, 2829
MslI CAYNNNNRTG 4 cut(s) 1028, 1322, 2066, 2277
Msp20I TGGCCA 2 cut(s) 188, 1523
MspA1I CMGCKG 3 cut(s) 952, 1096, 2134
MspR9I CCNGG 7 cut(s) 50, 403, 986, 1620, 2230, 2577, 2912
MunI CAATTG 1 cut(s) 2771
Mva1269I GAATGC 3 cut(s) 679, 1378, 3016
MvaI CCWGG 4 cut(s) 986, 1620, 2577, 2912
NaeI GCCGGC 2 cut(s) 34, 2302
NciI CCSGG 3 cut(s) 50, 403, 2230
NdeI CATATG 1 cut(s) 1502
NdeII GATC 2 cut(s) 708, 2965
NgoMIV GCCGGC 2 cut(s) 32, 2300
NmeAIII GCCGAG 4 cut(s) 220, 291, 2470, 2999
NmuCI GTSAC 4 cut(s) 6, 449, 473, 497
NsbI TGCGCA 1 cut(s) 319
NsiI ATGCAT 1 cut(s) 2938
NspI RCATGY 3 cut(s) 157, 805, 2940
NspV TTCGAA 2 cut(s) 683, 3020
PaeI GCATGC 1 cut(s) 157
PaeR7I CTCGAG 1 cut(s) 1049
PagI TCATGA 7 cut(s) 1029, 1323, 1653, 1788, 1932, 2067, 2502
PaqCI CACCTGC 1 cut(s) 2362
PasI CCCWGGG 1 cut(s) 2911
PciI ACATGT 1 cut(s) 801
PciSI GCTCTTC 2 cut(s) 96, 455
PctI GAATGC 3 cut(s) 679, 1378, 3016
PdiI GCCGGC 2 cut(s) 34, 2302
PfeI GAWTC 1 cut(s) 205
PleI GAGTC 2 cut(s) 544, 1334
PpsI GAGTC 2 cut(s) 544, 1334
PpuMI RGGWCCY 8 cut(s) 359, 569, 1044, 1481, 1938, 2548, 2645, 2906
PscI ACATGT 1 cut(s) 801
PsiI TTATAA 1 cut(s) 1062
Psp124BI GAGCTC 3 cut(s) 1796, 2075, 2510
Psp5II RGGWCCY 8 cut(s) 359, 569, 1044, 1481, 1938, 2548, 2645, 2906
Psp6I CCWGG 4 cut(s) 984, 1618, 2575, 2910
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 4 cut(s) 984, 1618, 2575, 2910
PspOMI GGGCCC 1 cut(s) 1947
PspPPI RGGWCCY 8 cut(s) 359, 569, 1044, 1481, 1938, 2548, 2645, 2906
PspXI VCTCGAGB 1 cut(s) 1049
PstI CTGCAG 1 cut(s) 2516
PstNI CAGNNNCTG 4 cut(s) 589, 952, 1096, 2134
PsuI RGATCY 1 cut(s) 2965
PvuII CAGCTG 3 cut(s) 952, 1096, 2134
RigI GGCCGGCC 2 cut(s) 36, 2304
RsaI GTAC 5 cut(s) 614, 1529, 1690, 2809, 2954
RsaNI GTAC 5 cut(s) 613, 1528, 1689, 2808, 2953
RseI CAYNNNNRTG 4 cut(s) 1028, 1322, 2066, 2277
SacI GAGCTC 3 cut(s) 1796, 2075, 2510
SapI GCTCTTC 2 cut(s) 96, 455
SaqAI TTAA 7 cut(s) 228, 444, 468, 492, 516, 1011, 2829
Sau3AI GATC 2 cut(s) 708, 2965
SbfI CCTGCAGG 1 cut(s) 2516
SchI GAGTC 2 cut(s) 544, 1334
ScrFI CCNGG 7 cut(s) 50, 403, 986, 1620, 2230, 2577, 2912
SdaI CCTGCAGG 1 cut(s) 2516
SfaNI GCATC 3 cut(s) 909, 1757, 1773
SfcI CTRYAG 2 cut(s) 1416, 2512
Sfr274I CTCGAG 1 cut(s) 1049
SfuI TTCGAA 2 cut(s) 683, 3020
SlaI CTCGAG 1 cut(s) 1049
SmiMI CAYNNNNRTG 4 cut(s) 1028, 1322, 2066, 2277
SmlI CTYRAG 5 cut(s) 908, 1049, 1196, 1952, 3004
SmoI CTYRAG 5 cut(s) 908, 1049, 1196, 1952, 3004
SphI GCATGC 1 cut(s) 157
Sse8387I CCTGCAGG 1 cut(s) 2516
SspMI CTAG 2 cut(s) 89, 782
SstI GAGCTC 3 cut(s) 1796, 2075, 2510
StyD4I CCNGG 7 cut(s) 48, 401, 984, 1618, 2228, 2575, 2910
StyI CCWWGG 5 cut(s) 363, 574, 1486, 2251, 2788
TaiI ACGT 2 cut(s) 132, 665
TaqI TCGA 6 cut(s) 144, 683, 1050, 1356, 1694, 3020
TatI WGTACW 2 cut(s) 1527, 2807
TauI GCSGC 6 cut(s) 409, 770, 1204, 1846, 1960, 2715
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 7 cut(s) 228, 444, 468, 492, 516, 1011, 2829
Tru9I TTAA 7 cut(s) 228, 444, 468, 492, 516, 1011, 2829
TseFI GTSAC 4 cut(s) 6, 449, 473, 497
Tsp45I GTSAC 4 cut(s) 6, 449, 473, 497
TspDTI ATGAA 5 cut(s) 806, 1163, 1307, 1340, 1670
TspGWI ACGGA 2 cut(s) 176, 2543
VneI GTGCAC 2 cut(s) 526, 2293
XagI CCTNNNNNAGG 1 cut(s) 92
XapI RAATTY 5 cut(s) 932, 1835, 1979, 2114, 2957
XceI RCATGY 3 cut(s) 157, 805, 2940
XcmI CCANNNNNNNNNTGG 3 cut(s) 1297, 2153, 2842
XhoI CTCGAG 1 cut(s) 1049
XspI CTAG 2 cut(s) 89, 782
Zsp2I ATGCAT 1 cut(s) 2938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.