FvH4_4g13311

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0019696
Physical Location & Seq
Reverse (-)
16904170 .. 16904776
607 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13311.t1

Sequence Viewer

Length: 306 bp
ATGGCTGGGCTTCAGTTTGCTGAGGCTTTTAGTGCATTGTTTGGAGCTATTCAGAAGAGGACATCCGCACAGACGCAAAAGCGTGGACGATCATCTCCAGGCCTCGACCAGGCATCCATGGCGGCTCTGCTGTTGCTGGATGAGACTTTGGACATGTCGGACTGCATCACAATCAAGGTTTCCGGCGAGCTAGCACCATCAACGCCGACTTCAAACTTTTCGACCACGAGTCCAACTGCAAGGAGATGCTCTACATCAATTCCTAGTTTGGCACCCGGCAACAGCAGAGCCACCATCAACGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.49

Weight (kDa)

8.84

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019696)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13311 FvH4_5g31420 FvH4_6g23480
rosa_multiflora Rmu_sc0002964.1_g000010
rosa_roxburghii Rroxscaffold_5G00377410 Rroxscaffold_6G00400400
rosa_samantha Rh4AG234100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 271
AciI CCGC 2 cut(s) 66, 122
AfiI CCNNNNNNNGG 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 1 cut(s) 213
AhdI GACNNNNNGTC 1 cut(s) 228
AjnI CCWGG 2 cut(s) 97, 108
AluBI AGCT 2 cut(s) 47, 190
AluI AGCT 2 cut(s) 47, 190
Alw26I GTCTC 1 cut(s) 137
AoxI GGCC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 276
AsuNHI GCTAGC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 271
BauI CACGAG 1 cut(s) 226
BbvCI CCTCAGC 1 cut(s) 21
BccI CCATC 2 cut(s) 205, 302
BciT130I CCWGG 2 cut(s) 99, 110
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 2 cut(s) 191, 264
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 3 cut(s) 99, 110, 276
BmeRI GACNNNNNGTC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 3 cut(s) 99, 110, 276
BmsI GCATC 3 cut(s) 122, 174, 236
BmtI GCTAGC 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 109
BseBI CCWGG 2 cut(s) 99, 110
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 3 cut(s) 62, 113, 145
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 12
BseYI CCCAGC 1 cut(s) 5
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 271
BsiSI CCGG 2 cut(s) 183, 276
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 2 cut(s) 66, 122
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 273
BspOI GCTAGC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 89
BssSI CACGAG 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 226
Bst2UI CCWGG 2 cut(s) 99, 110
Bst6I CTCTTC 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 188, 192
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 117
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 3 cut(s) 62, 113, 145
BstKTI GATC 1 cut(s) 92
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 1 cut(s) 89
BstMWI GCNNNNNNNGC 2 cut(s) 32, 119
BstNI CCWGG 2 cut(s) 99, 110
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 3 cut(s) 97, 108, 274
BsuRI GGCC 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 3 cut(s) 62, 113, 145
Cac8I GCNNGC 2 cut(s) 188, 192
CseI GACGC 1 cut(s) 82
CviAII CATG 2 cut(s) 118, 154
CviJI RGCY 8 cut(s) 5, 10, 26, 47, 102, 125, 190, 290
CviKI_1 RGCY 8 cut(s) 5, 10, 26, 47, 102, 125, 190, 290
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
DriI GACNNNNNGTC 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 50
Eam1105I GACNNNNNGTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 97, 108
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 121, 157
FaiI YATR 2 cut(s) 119, 155
FatI CATG 2 cut(s) 117, 153
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 3 cut(s) 49, 100, 152
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 2 cut(s) 191, 264
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 1 cut(s) 102
HapII CCGG 2 cut(s) 183, 276
HgaI GACGC 1 cut(s) 82
Hin1II CATG 2 cut(s) 121, 157
HinfI GANTC 1 cut(s) 229
HpaII CCGG 2 cut(s) 183, 276
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 54, 160
Hpy8I GTNNAC 1 cut(s) 86
HpyCH4V TGCA 3 cut(s) 35, 165, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 119
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 2 cut(s) 121, 157
Kzo9I GATC 1 cut(s) 89
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 7 cut(s) 84, 95, 111, 122, 122, 196, 289
LweI GCATC 3 cut(s) 122, 174, 236
MaeI CTAG 2 cut(s) 191, 264
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MboII GAAGA 1 cut(s) 67
MluCI AATT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 2 cut(s) 138, 257
MnlI CCTC 3 cut(s) 16, 51, 113
MspI CCGG 2 cut(s) 183, 276
MspR9I CCNGG 3 cut(s) 99, 110, 276
MvaI CCWGG 2 cut(s) 99, 110
MwoI GCNNNNNNNGC 2 cut(s) 32, 119
NciI CCSGG 1 cut(s) 276
NcoI CCATGG 1 cut(s) 117
NdeII GATC 1 cut(s) 89
NheI GCTAGC 1 cut(s) 190
NlaIII CATG 2 cut(s) 121, 157
NlaIV GGNNCC 1 cut(s) 273
NspI RCATGY 1 cut(s) 157
PceI AGGCCT 1 cut(s) 102
PciI ACATGT 1 cut(s) 153
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PscI ACATGT 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 97, 108
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 2 cut(s) 97, 108
PspN4I GGNNCC 1 cut(s) 273
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 89
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 3 cut(s) 99, 110, 276
SetI ASST 3 cut(s) 49, 180, 192
SfaNI GCATC 3 cut(s) 122, 174, 236
Sse9I AATT 1 cut(s) 258
SseBI AGGCCT 1 cut(s) 102
SsiI CCGC 2 cut(s) 66, 122
SspMI CTAG 2 cut(s) 191, 264
StuI AGGCCT 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 97, 108, 274
StyI CCWWGG 1 cut(s) 117
TaqI TCGA 2 cut(s) 105, 221
TasI AATT 1 cut(s) 258
TauI GCSGC 1 cut(s) 125
XagI CCTNNNNNAGG 1 cut(s) 107
XceI RCATGY 1 cut(s) 157
XspI CTAG 2 cut(s) 191, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.