FvH4_5g31420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0019696
Physical Location & Seq
Forward (+)
22323843 .. 22328578
4736 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31420.t1

Sequence Viewer

Length: 300 bp
ATGAATCTTCTCCTCGAGGACATGCTTCATGGAGTGGTGGTCGACGAGATTGGCCTTCTTAGGACACAAAAGTGCCGACGATCATCTTCAGGCCTCGATCAAGCATCCATGGCGGCTCTGTTGTTGCCGGATCAGACTTTGGACATGACAGACTACATCACAATCAAGGTCTCGTCGGAAACCTCAAGAACCATCAACGCCGACTTCAAACTCTTTAACCATGAGTCCAGTAGCAAGGAAATGCTCCACATCGATGCTTGGTTTGGCGCCGGCAACAGCAGAGCCACCATCAACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.0

Weight (kDa)

4.99

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019696)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13311 FvH4_5g31420 FvH4_6g23480
rosa_multiflora Rmu_sc0002964.1_g000010
rosa_roxburghii Rroxscaffold_5G00377410 Rroxscaffold_6G00400400
rosa_samantha Rh4AG234100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 42
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 267
AgsI TTSAA 1 cut(s) 208
AleI CACNNNNGTG 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 2 cut(s) 52, 91
AspLEI GCGC 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 14
BanI GGYRCC 1 cut(s) 266
BccI CCATC 2 cut(s) 200, 296
BcoDI GTCTC 1 cut(s) 175
BfoI RGCGCY 1 cut(s) 270
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 268
BmsI GCATC 2 cut(s) 113, 244
BpuEI CTTGAG 1 cut(s) 169
Bsa29I ATCGAT 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 228
BshFI GGCC 2 cut(s) 54, 93
BshNI GGYRCC 1 cut(s) 266
BshVI ATCGAT 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 2 cut(s) 128, 270
BsmAI GTCTC 1 cut(s) 175
BsnI GGCC 2 cut(s) 54, 93
Bso31I GGTCTC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 14
Bsp143I GATC 3 cut(s) 80, 97, 130
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 54, 93
BspDI ATCGAT 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 268
BspPI GGATC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 3 cut(s) 80, 97, 130
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 59
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 3 cut(s) 83, 100, 133
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 3 cut(s) 80, 97, 130
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 25
Bsu15I ATCGAT 1 cut(s) 252
BsuRI GGCC 2 cut(s) 54, 93
BsuTUI ATCGAT 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 1 cut(s) 269
Cfr10I RCCGGY 1 cut(s) 269
ClaI ATCGAT 1 cut(s) 252
CviAII CATG 5 cut(s) 22, 29, 109, 145, 221
CviJI RGCY 4 cut(s) 54, 93, 116, 284
CviKI_1 RGCY 4 cut(s) 54, 93, 116, 284
DdeI CTNAG 1 cut(s) 59
DinI GGCGCC 1 cut(s) 268
DpnI GATC 3 cut(s) 82, 99, 132
DpnII GATC 3 cut(s) 80, 97, 130
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 108
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 5 cut(s) 25, 32, 112, 148, 224
FaiI YATR 5 cut(s) 23, 30, 110, 146, 222
FatI CATG 5 cut(s) 21, 28, 108, 144, 220
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 114
GlaI GCGC 1 cut(s) 268
GluI GCNGC 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 54, 93
HapII CCGG 2 cut(s) 128, 270
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 5 cut(s) 25, 32, 112, 148, 224
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 2 cut(s) 4, 224
HpaII CCGG 2 cut(s) 128, 270
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 135, 178
Hpy188III TCNNGA 1 cut(s) 186
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 3 cut(s) 47, 81, 178
HpyAV CCTTC 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 59
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 5 cut(s) 25, 32, 112, 148, 224
HspAI GCGC 1 cut(s) 267
KasI GGCGCC 1 cut(s) 266
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Kzo9I GATC 3 cut(s) 80, 97, 130
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 4 cut(s) 75, 141, 241, 283
LweI GCATC 2 cut(s) 113, 244
MalI GATC 3 cut(s) 82, 99, 132
MboI GATC 3 cut(s) 80, 97, 130
MboII GAAGA 1 cut(s) 78
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 4 cut(s) 10, 23, 104, 193
MroNI GCCGGC 1 cut(s) 269
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 2 cut(s) 70, 252
MspI CCGG 2 cut(s) 128, 270
MwoI GCNNNNNNNGC 1 cut(s) 110
NaeI GCCGGC 1 cut(s) 271
NarI GGCGCC 1 cut(s) 267
NcoI CCATGG 1 cut(s) 108
NdeII GATC 3 cut(s) 80, 97, 130
NgoMIV GCCGGC 1 cut(s) 269
NlaIII CATG 5 cut(s) 25, 32, 112, 148, 224
NlaIV GGNNCC 1 cut(s) 268
NspI RCATGY 1 cut(s) 25
OliI CACNNNNGTG 1 cut(s) 70
PaeR7I CTCGAG 1 cut(s) 14
PceI AGGCCT 1 cut(s) 93
PdiI GCCGGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 232
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 268
PspXI VCTCGAGB 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 70, 252
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 3 cut(s) 80, 97, 130
SchI GAGTC 1 cut(s) 233
SetI ASST 2 cut(s) 171, 185
SfaNI GCATC 2 cut(s) 113, 244
SfoI GGCGCC 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 14
SmiMI CAYNNNNRTG 2 cut(s) 70, 252
SmlI CTYRAG 2 cut(s) 14, 184
SmoI CTYRAG 2 cut(s) 14, 184
SseBI AGGCCT 1 cut(s) 93
SsiI CCGC 1 cut(s) 113
SspDI GGCGCC 1 cut(s) 266
StuI AGGCCT 1 cut(s) 93
StyI CCWWGG 1 cut(s) 108
TaqI TCGA 4 cut(s) 15, 42, 96, 252
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TspDTI ATGAA 2 cut(s) 17, 17
XceI RCATGY 1 cut(s) 25
XhoI CTCGAG 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.