Rroxscaffold_5G00377410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0019696
Physical Location & Seq
Forward (+)
57951990 .. 57963041
11052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377410.1

Sequence Viewer

Length: 576 bp
ATGCTAGAGTCAATTGCATTAACTGAACCGCCAACAGAGGAAGCAAAGGATCGTAATGGCCAGCTAACTAACTCCATTGCCATAATAGATGCCATCAAATTCTTCACCAAAAGATGGAGAGCATTTCTAACGTTCATGCACATGTTGCTGAAGGTCCCTACGTTCAATGAAAGCTTCTTTATCTATGATAGATGTATTCCTAAAGCACTTGCGATCGACAAGACGATCGATCTGCTAGCTGGTTCTTATCTTTGCAATGCAAAGGCTCGGCTGATCGAGAATCGAAGGTGTGCATGGCGAGCTCGCTCGAAACCATGGAAGCCCATCAAGGTCGACTTTGAACTCTTCATCGACGACCCCGGGGGCAAGCGAGAGGCTCGACATCGACGCATGGTTCGGCACGGCAACCGCAGCGCCGCCATCTTCGCCCGATCAAGGCACGAGGAGGGATGTCCGCACTTTTACATCTGTACGGATGTCCTCTTACGAACGGCTCCGCGTATGTGCGTGTGTGTGTATATATATCTTTTTGTTTATATTGCCATGGCAACCCTGAAGTCCTTTGAGATATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

22.25

Weight (kDa)

9.53

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019696)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13311 FvH4_5g31420 FvH4_6g23480
rosa_multiflora Rmu_sc0002964.1_g000010
rosa_roxburghii Rroxscaffold_5G00377410 Rroxscaffold_6G00400400
rosa_samantha Rh4AG234100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 574
AccB7I CCANNNNNTGG 1 cut(s) 114
AccI GTMKAC 1 cut(s) 333
AccII CGCG 1 cut(s) 499
AciI CCGC 5 cut(s) 29, 409, 417, 455, 497
AclI AACGTT 1 cut(s) 131
AclWI GGATC 1 cut(s) 57
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 2 cut(s) 170, 575
AfaI GTAC 1 cut(s) 472
AfiI CCNNNNNNNGG 2 cut(s) 114, 435
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 2 cut(s) 166, 341
AluBI AGCT 4 cut(s) 64, 174, 239, 302
AluI AGCT 4 cut(s) 64, 174, 239, 302
Alw21I GWGCWC 1 cut(s) 304
AlwI GGATC 1 cut(s) 57
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 411
ApoI RAATTY 1 cut(s) 98
ArsI GACNNNNNNTTYG 2 cut(s) 378, 410
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 2 cut(s) 360, 361
AsuHPI GGTGA 1 cut(s) 97
AsuNHI GCTAGC 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 1 cut(s) 154
BalI TGGCCA 1 cut(s) 60
BanII GRGCYC 1 cut(s) 304
BauI CACGAG 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 423
BccI CCATC 4 cut(s) 101, 108, 332, 428
BceAI ACGGC 2 cut(s) 418, 507
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BcnI CCSGG 2 cut(s) 360, 361
BfaI CTAG 2 cut(s) 5, 236
BfoI RGCGCY 1 cut(s) 417
BisI GCNGC 2 cut(s) 412, 417
BlsI GCNGC 2 cut(s) 413, 418
Bme1390I CCNGG 2 cut(s) 360, 361
Bme18I GGWCC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 156, 495
BmrFI CCNGG 2 cut(s) 360, 361
BmsI GCATC 1 cut(s) 79
BmtI GCTAGC 1 cut(s) 239
BpuMI CCSGG 2 cut(s) 360, 361
Bsa29I ATCGAT 1 cut(s) 228
BsaJI CCNNGG 5 cut(s) 314, 358, 359, 360, 543
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 435
Bse3DI GCAATG 2 cut(s) 75, 262
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 5 cut(s) 314, 358, 359, 360, 543
BseGI GGATG 2 cut(s) 455, 481
BseLI CCNNNNNNNGG 2 cut(s) 114, 435
BseMI GCAATG 2 cut(s) 75, 262
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 499
Bsh1285I CGRYCG 2 cut(s) 216, 228
BshFI GGCC 1 cut(s) 60
BshVI ATCGAT 1 cut(s) 228
BsiEI CGRYCG 2 cut(s) 216, 228
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 1 cut(s) 360
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 114, 435
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 1 cut(s) 60
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 6 cut(s) 49, 213, 225, 229, 273, 431
Bsp19I CCATGG 2 cut(s) 314, 543
BspACI CCGC 5 cut(s) 29, 409, 417, 455, 497
BspANI GGCC 1 cut(s) 60
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 1 cut(s) 499
BspLI GGNNCC 2 cut(s) 156, 495
BspOI GCTAGC 1 cut(s) 239
BspPI GGATC 1 cut(s) 57
BsrDI GCAATG 2 cut(s) 75, 262
BssECI CCNNGG 5 cut(s) 314, 358, 359, 360, 543
BssMI GATC 6 cut(s) 49, 213, 225, 229, 273, 431
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 2 cut(s) 314, 543
Bst2BI CACGAG 1 cut(s) 440
Bst6I CTCTTC 1 cut(s) 350
BstAPI GCANNNNNTGC 1 cut(s) 145
BstC8I GCNNGC 5 cut(s) 62, 237, 300, 304, 368
BstDSI CCRYGG 2 cut(s) 314, 543
BstF5I GGATG 2 cut(s) 455, 481
BstFNI CGCG 1 cut(s) 499
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 6 cut(s) 52, 216, 228, 232, 276, 434
BstMBI GATC 6 cut(s) 49, 213, 225, 229, 273, 431
BstMCI CGRYCG 2 cut(s) 216, 228
BstMWI GCNNNNNNNGC 4 cut(s) 145, 299, 411, 425
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 2 cut(s) 358, 359
BstUI CGCG 1 cut(s) 499
BstV1I GCAGC 1 cut(s) 423
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 1 cut(s) 60
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 2 cut(s) 314, 543
BtsCI GGATG 2 cut(s) 455, 481
Cac8I GCNNGC 5 cut(s) 62, 237, 300, 304, 368
CfoI GCGC 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 154
Cfr9I CCCGGG 1 cut(s) 359
ClaI ATCGAT 1 cut(s) 228
CseI GACGC 1 cut(s) 396
Csp6I GTAC 1 cut(s) 471
CviAII CATG 6 cut(s) 136, 142, 294, 315, 391, 544
CviQI GTAC 1 cut(s) 471
DpnI GATC 6 cut(s) 51, 215, 227, 231, 275, 433
DpnII GATC 6 cut(s) 49, 213, 225, 229, 273, 431
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Ecl136II GAGCTC 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 314, 543
Eco24I GRGCYC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 302
Eco57I CTGAAG 2 cut(s) 170, 575
Eco88I CYCGRG 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 314, 543
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 2 cut(s) 314, 543
FaeI CATG 6 cut(s) 139, 145, 297, 318, 394, 547
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 1 cut(s) 140
FatI CATG 6 cut(s) 135, 141, 293, 314, 390, 543
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 2 cut(s) 412, 417
FokI GGATG 2 cut(s) 462, 488
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 2 cut(s) 412, 417
FspBI CTAG 2 cut(s) 5, 236
GlaI GCGC 1 cut(s) 415
GluI GCNGC 2 cut(s) 412, 417
HaeII RGCGCY 1 cut(s) 417
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 360
HgaI GACGC 1 cut(s) 396
HhaI GCGC 1 cut(s) 416
Hin1II CATG 6 cut(s) 139, 145, 297, 318, 394, 547
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 2 cut(s) 8, 280
HpaII CCGG 1 cut(s) 360
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 334
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 2 cut(s) 356, 390
HpyAV CCTTC 2 cut(s) 145, 279
HpyCH4IV ACGT 2 cut(s) 131, 161
HpyCH4V TGCA 5 cut(s) 17, 139, 255, 260, 293
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 299, 411, 425
HpySE526I ACGT 2 cut(s) 131, 161
Hsp92II CATG 6 cut(s) 139, 145, 297, 318, 394, 547
HspAI GCGC 1 cut(s) 414
Kzo9I GATC 6 cut(s) 49, 213, 225, 229, 273, 431
LmnI GCTCC 1 cut(s) 499
LpnPI CCDG 4 cut(s) 74, 225, 373, 566
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 1 cut(s) 79
MaeI CTAG 2 cut(s) 5, 236
MaeII ACGT 2 cut(s) 131, 161
MalI GATC 6 cut(s) 51, 215, 227, 231, 275, 433
MboI GATC 6 cut(s) 49, 213, 225, 229, 273, 431
MboII GAAGA 3 cut(s) 94, 337, 415
MfeI CAATTG 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 2 cut(s) 12, 98
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 5 cut(s) 31, 367, 436, 439, 491
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 60
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 2 cut(s) 360, 361
MunI CAATTG 1 cut(s) 12
MvnI CGCG 1 cut(s) 499
MwoI GCNNNNNNNGC 4 cut(s) 145, 299, 411, 425
NciI CCSGG 2 cut(s) 360, 361
NcoI CCATGG 2 cut(s) 314, 543
NdeII GATC 6 cut(s) 49, 213, 225, 229, 273, 431
NheI GCTAGC 1 cut(s) 235
NlaIII CATG 6 cut(s) 139, 145, 297, 318, 394, 547
NlaIV GGNNCC 2 cut(s) 156, 495
NmeAIII GCCGAG 1 cut(s) 247
NspI RCATGY 1 cut(s) 145
PciI ACATGT 1 cut(s) 141
PfeI GAWTC 1 cut(s) 280
PflMI CCANNNNNTGG 1 cut(s) 114
PkrI GCNGC 2 cut(s) 413, 418
Ple19I CGATCG 2 cut(s) 216, 228
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PpuMI RGGWCCY 1 cut(s) 154
PscI ACATGT 1 cut(s) 141
PsiI TTATAA 1 cut(s) 574
Psp124BI GAGCTC 1 cut(s) 304
Psp1406I AACGTT 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 156, 495
PspPI GGNCC 1 cut(s) 154
PspPPI RGGWCCY 1 cut(s) 154
PvuI CGATCG 2 cut(s) 216, 228
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 140
SacI GAGCTC 1 cut(s) 304
SalI GTCGAC 1 cut(s) 332
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 2 cut(s) 412, 417
Sau3AI GATC 6 cut(s) 49, 213, 225, 229, 273, 431
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 360, 361
SduI GDGCHC 1 cut(s) 304
SetI ASST 9 cut(s) 66, 134, 156, 164, 176, 241, 290, 304, 333
SfaNI GCATC 1 cut(s) 79
SinI GGWCC 1 cut(s) 154
SmaI CCCGGG 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 2 cut(s) 12, 98
SsiI CCGC 5 cut(s) 29, 409, 417, 455, 497
SspMI CTAG 2 cut(s) 5, 236
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 2 cut(s) 358, 359
StyI CCWWGG 2 cut(s) 314, 543
TaiI ACGT 2 cut(s) 134, 164
TaqI TCGA 9 cut(s) 216, 228, 276, 283, 308, 333, 351, 379, 385
TasI AATT 2 cut(s) 12, 98
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TseI GCWGC 1 cut(s) 411
TspDTI ATGAA 3 cut(s) 124, 183, 337
TspGWI ACGGA 1 cut(s) 488
TspMI CCCGGG 1 cut(s) 359
Van91I CCANNNNNTGG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 1 cut(s) 98
XceI RCATGY 1 cut(s) 145
XmaI CCCGGG 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 333
XspI CTAG 2 cut(s) 5, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.