Rmu_sc0002964.1_g000010

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002964.1
OG0019696
Physical Location & Seq
Forward (+)
45969 .. 47345
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002964.1_g000010.1.cds

Sequence Viewer

Length: 366 bp
atggccccaaagtattgttttcaaggaagggcaagcaaagaatcggatatattcaattttggagttgttgctttggaaattgcttataggaggcagacttatctttatggagaataccacataccactttttgagtgggcgctgcggttgtcggacaaacactctagacattccagacggtgtcaccatcaaggcgaaggctcagctgatcagaatcaaaggtgtacacggcgagctagcctgaaaccatggaaccccatcaaggtcgacttcgaactcttcatcgatgactccagtggcaagcagaggctcaacatcgaggtctggtttggcacaggcaaccgcagctcctccattaccgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

121

Amino Acids

14.08

Weight (kDa)

9.33

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019696)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13311 FvH4_5g31420 FvH4_6g23480
rosa_multiflora Rmu_sc0002964.1_g000010
rosa_roxburghii Rroxscaffold_5G00377410 Rroxscaffold_6G00400400
rosa_samantha Rh4AG234100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AciI CCGC 3 cut(s) 145, 343, 360
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 2 cut(s) 23, 55
AluBI AGCT 3 cut(s) 206, 236, 348
AluI AGCT 3 cut(s) 206, 236, 348
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 142, 345
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 176
AsuII TTCGAA 1 cut(s) 273
AsuNHI GCTAGC 1 cut(s) 236
BbvI GCAGC 2 cut(s) 129, 357
BccI CCATC 2 cut(s) 195, 266
BceAI ACGGC 1 cut(s) 245
BclI TGATCA 1 cut(s) 208
BfaI CTAG 2 cut(s) 165, 237
BfoI RGCGCY 1 cut(s) 143
BisI GCNGC 2 cut(s) 143, 346
BlpI GCTNAGC 1 cut(s) 202
BlsI GCNGC 2 cut(s) 144, 347
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 254
BmtI GCTAGC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 277
Bpu1102I GCTNAGC 1 cut(s) 202
Bpu14I TTCGAA 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 285
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 294
Bse8I GATNNNNATC 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 248
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 340
BseXI GCAGC 2 cut(s) 129, 357
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 262
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 273
Bsp1407I TGTACA 1 cut(s) 224
Bsp143I GATC 1 cut(s) 208
Bsp1720I GCTNAGC 1 cut(s) 202
Bsp19I CCATGG 1 cut(s) 248
BspACI CCGC 3 cut(s) 145, 343, 360
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 215
BspDI ATCGAT 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 6, 254
BspOI GCTAGC 1 cut(s) 240
BspT104I TTCGAA 1 cut(s) 273
BsrGI TGTACA 1 cut(s) 224
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 284
BstAUI TGTACA 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 273
BstC8I GCNNGC 4 cut(s) 34, 234, 238, 302
BstDEI CTNAG 1 cut(s) 202
BstDSI CCRYGG 1 cut(s) 248
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstV1I GCAGC 2 cut(s) 129, 357
Bsu15I ATCGAT 1 cut(s) 285
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 285
BtgI CCRYGG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 4 cut(s) 34, 234, 238, 302
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 285
Csp6I GTAC 1 cut(s) 225
CviAII CATG 1 cut(s) 249
CviJI RGCY 7 cut(s) 5, 201, 206, 236, 240, 310, 348
CviKI_1 RGCY 7 cut(s) 5, 201, 206, 236, 240, 310, 348
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 202
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 1 cut(s) 252
FaiI YATR 5 cut(s) 50, 87, 108, 122, 250
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 1 cut(s) 248
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 143, 346
Fsp4HI GCNGC 2 cut(s) 143, 346
FspBI CTAG 2 cut(s) 165, 237
GlaI GCGC 1 cut(s) 141
GluI GCNGC 2 cut(s) 143, 346
GsuI CTGGAG 1 cut(s) 277
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 142
Hin1II CATG 1 cut(s) 252
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 3 cut(s) 41, 214, 290
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 3 cut(s) 225, 227, 268
Hpy188I TCNGA 3 cut(s) 46, 154, 213
Hpy188III TCNNGA 2 cut(s) 165, 174
Hpy8I GTNNAC 3 cut(s) 225, 227, 268
HpyAV CCTTC 2 cut(s) 21, 191
HpyCH4III ACNGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
HpyF3I CTNAG 1 cut(s) 202
Hsp92II CATG 1 cut(s) 252
HspAI GCGC 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 353
LpnPI CCDG 5 cut(s) 187, 254, 307, 310, 321
Lsp1109I GCAGC 2 cut(s) 129, 357
MaeI CTAG 2 cut(s) 165, 237
MaeIII GTNAC 1 cut(s) 182
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 1 cut(s) 271
MluCI AATT 2 cut(s) 55, 78
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 4 cut(s) 84, 300, 313, 361
MspA1I CMGCKG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 345
NcoI CCATGG 1 cut(s) 248
NdeII GATC 1 cut(s) 208
NheI GCTAGC 1 cut(s) 236
NlaIII CATG 1 cut(s) 252
NlaIV GGNNCC 2 cut(s) 6, 254
NmuCI GTSAC 1 cut(s) 182
NspV TTCGAA 1 cut(s) 273
PfeI GAWTC 2 cut(s) 41, 214
PflFI GACNNNGTC 1 cut(s) 180
PkrI GCNGC 2 cut(s) 144, 347
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 6, 254
PspPI GGNCC 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 180
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SalI GTCGAC 1 cut(s) 266
SatI GCNGC 2 cut(s) 143, 346
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 284
SetI ASST 6 cut(s) 208, 224, 238, 267, 324, 350
SfuI TTCGAA 1 cut(s) 273
Sse9I AATT 2 cut(s) 55, 78
SsiI CCGC 3 cut(s) 145, 343, 360
SspMI CTAG 2 cut(s) 165, 237
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 180
TaqI TCGA 4 cut(s) 267, 273, 285, 318
TasI AATT 2 cut(s) 55, 78
TatI WGTACW 1 cut(s) 224
TfiI GAWTC 2 cut(s) 41, 214
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 2 cut(s) 142, 345
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 271
TspRI CASTG 1 cut(s) 301
Tth111I GACNNNGTC 1 cut(s) 180
XbaI TCTAGA 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 2 cut(s) 165, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.