Rroxscaffold_6G00400400

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0019696
Physical Location & Seq
Forward (+)
22507166 .. 22508011
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400400.1

Sequence Viewer

Length: 603 bp
ATGGAAGGACATGAATACTACTTCAATGCGGCAGTGCCTTCTATAACTAGGGATCTTGAGAGACTAGCCTTGCCAAGACGATTTGCTTATCGAGAATTAGTTGCAGCCACTATTGGTTTTGTAAATGATAGAAGGCTAGGCCAAAGAGGCTCCGGACAGGTTTATAGAGGAGCTAGTCATACCAGATCTTGGCTGTGTGATGCAGGGCAATGGGTCCTTCACAGGGATATTAAATCAGCTAACATATTGTTGGACAACGATTTCAGCACTAAGCTTGGGGATTTTGGGATCGCTAAGCTGGTAGATCCGCGGTTGAGGACTAGGACGACAGTGGTGGTGGGGACTTTCAGCTACATGGCCCCGGAATATGCTTTTCAAGGGAGGCCTAGCAAAGAGTCGGACATGTTTAGTTTTGGAGTTGTAGCCTTGGAGATTGCTTGCGGAAGGCAGACTTATCACGATGGAGAATATCACATACCACTTTTCGAGTGGGTTTGGCAGTTTTACCTTGCAGGAAATGTTCTCGAGGCAGCTGGCGAGAGATTGGATATAAATGGAATGCTTGTTAATCGTGGGATTATGGTGCACTCACCTCAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

200

Amino Acids

22.69

Weight (kDa)

7.02

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 71 - 154 4e-21 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 72 - 154 2.2e-16 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019696)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13311 FvH4_5g31420 FvH4_6g23480
rosa_multiflora Rmu_sc0002964.1_g000010
rosa_roxburghii Rroxscaffold_5G00377410 Rroxscaffold_6G00400400
rosa_samantha Rh4AG234100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 189
AccII CGCG 1 cut(s) 310
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 4 cut(s) 29, 308, 310, 441
AclWI GGATC 3 cut(s) 60, 296, 299
AfiI CCNNNNNNNGG 2 cut(s) 189, 223
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 2 cut(s) 25, 377
AluBI AGCT 6 cut(s) 173, 239, 274, 298, 351, 533
AluI AGCT 6 cut(s) 173, 239, 274, 298, 351, 533
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 1 cut(s) 55
Alw44I GTGCAC 1 cut(s) 584
AlwI GGATC 3 cut(s) 60, 296, 299
Ama87I CYCGRG 1 cut(s) 524
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 3 cut(s) 139, 357, 383
ApaLI GTGCAC 1 cut(s) 584
ApeKI GCWGC 2 cut(s) 104, 530
AspS9I GGNCC 2 cut(s) 214, 358
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 582
AvaI CYCGRG 1 cut(s) 524
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 2 cut(s) 116, 542
BccI CCATC 1 cut(s) 455
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 6 cut(s) 48, 65, 137, 174, 321, 387
BglI GCCNNNNNGGC 1 cut(s) 147
BglII AGATCT 1 cut(s) 185
BisI GCNGC 3 cut(s) 30, 105, 531
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 3 cut(s) 31, 106, 532
Bme1390I CCNGG 1 cut(s) 362
Bme18I GGWCC 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 2 cut(s) 214, 358
BmiI GGNNCC 3 cut(s) 151, 215, 360
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 1 cut(s) 190
Bpu1102I GCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 362
BsaJI CCNNGG 3 cut(s) 308, 360, 426
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 223
Bse3DI GCAATG 1 cut(s) 215
BseAI TCCGGA 1 cut(s) 152
BseDI CCNNGG 3 cut(s) 308, 360, 426
BseLI CCNNNNNNNGG 2 cut(s) 189, 223
BseMI GCAATG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 183
BseSI GKGCMC 1 cut(s) 588
BseXI GCAGC 2 cut(s) 116, 542
Bsh1236I CGCG 1 cut(s) 310
BshFI GGCC 3 cut(s) 141, 359, 385
BsiHKAI GWGCWC 1 cut(s) 588
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 2 cut(s) 153, 362
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 189, 223
BsmAI GTCTC 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 355
BsmI GAATGC 1 cut(s) 564
BsnI GGCC 3 cut(s) 141, 359, 385
BsoBI CYCGRG 1 cut(s) 524
Bsp1286I GDGCHC 1 cut(s) 588
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 4 cut(s) 52, 185, 288, 304
Bsp1720I GCTNAGC 1 cut(s) 294
BspACI CCGC 4 cut(s) 29, 308, 310, 441
BspANI GGCC 3 cut(s) 141, 359, 385
BspEI TCCGGA 1 cut(s) 152
BspFNI CGCG 1 cut(s) 310
BspLI GGNNCC 3 cut(s) 151, 215, 360
BspPI GGATC 3 cut(s) 60, 296, 299
BsrDI GCAATG 1 cut(s) 215
BssECI CCNNGG 3 cut(s) 308, 360, 426
BssMI GATC 4 cut(s) 52, 185, 288, 304
BssT1I CCWWGG 1 cut(s) 426
Bst4CI ACNGT 2 cut(s) 331, 600
BstC8I GCNNGC 2 cut(s) 439, 535
BstDEI CTNAG 2 cut(s) 270, 294
BstDSI CCRYGG 1 cut(s) 308
BstFNI CGCG 1 cut(s) 310
BstKTI GATC 4 cut(s) 55, 188, 291, 307
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 4 cut(s) 52, 185, 288, 304
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 588
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 116, 542
BstX2I RGATCY 3 cut(s) 52, 185, 304
BstYI RGATCY 3 cut(s) 52, 185, 304
BsuRI GGCC 3 cut(s) 141, 359, 385
BtgI CCRYGG 1 cut(s) 308
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 336
Cac8I GCNNGC 2 cut(s) 439, 535
Cfr13I GGNCC 2 cut(s) 214, 358
Cfr42I CCGCGG 1 cut(s) 311
CviAII CATG 3 cut(s) 11, 355, 403
DdeI CTNAG 2 cut(s) 270, 294
DpnI GATC 4 cut(s) 54, 187, 290, 306
DpnII GATC 4 cut(s) 52, 185, 288, 304
Eco130I CCWWGG 1 cut(s) 426
Eco147I AGGCCT 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 3 cut(s) 14, 358, 406
FalI AAGNNNNNCTT 2 cut(s) 436, 468
FaqI GGGAC 1 cut(s) 355
FatI CATG 3 cut(s) 10, 354, 402
Fnu4HI GCNGC 3 cut(s) 30, 105, 531
Fsp4HI GCNGC 3 cut(s) 30, 105, 531
FspBI CTAG 6 cut(s) 48, 65, 137, 174, 321, 387
GluI GCNGC 3 cut(s) 30, 105, 531
HaeIII GGCC 3 cut(s) 141, 359, 385
HapII CCGG 2 cut(s) 153, 362
Hin1II CATG 3 cut(s) 14, 358, 406
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 1 cut(s) 395
HpaII CCGG 2 cut(s) 153, 362
HphI GGTGA 1 cut(s) 582
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 5 cut(s) 56, 92, 153, 458, 524
Hpy8I GTNNAC 1 cut(s) 586
HpyAV CCTTC 4 cut(s) 48, 126, 227, 438
HpyCH4III ACNGT 2 cut(s) 331, 600
HpyCH4V TGCA 4 cut(s) 104, 203, 512, 586
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 2 cut(s) 270, 294
Hsp92II CATG 3 cut(s) 14, 358, 406
Kpn2I TCCGGA 1 cut(s) 152
KspI CCGCGG 1 cut(s) 311
Kzo9I GATC 4 cut(s) 52, 185, 288, 304
LmnI GCTCC 2 cut(s) 155, 170
LpnPI CCDG 9 cut(s) 143, 166, 189, 196, 208, 284, 375, 498, 519
Lsp1109I GCAGC 2 cut(s) 116, 542
LweI GCATC 1 cut(s) 190
MaeI CTAG 6 cut(s) 48, 65, 137, 174, 321, 387
MalI GATC 4 cut(s) 54, 187, 290, 306
MboI GATC 4 cut(s) 52, 185, 288, 304
MflI RGATCY 3 cut(s) 52, 185, 304
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 1 cut(s) 95
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 2 cut(s) 231, 378
MnlI CCTC 6 cut(s) 140, 161, 309, 375, 520, 603
MroI TCCGGA 1 cut(s) 152
MseI TTAA 2 cut(s) 231, 567
MspA1I CMGCKG 2 cut(s) 310, 533
MspI CCGG 2 cut(s) 153, 362
MspR9I CCNGG 1 cut(s) 362
Mva1269I GAATGC 1 cut(s) 564
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 147
NciI CCSGG 1 cut(s) 362
NdeII GATC 4 cut(s) 52, 185, 288, 304
NlaIII CATG 3 cut(s) 14, 358, 406
NlaIV GGNNCC 3 cut(s) 151, 215, 360
NspI RCATGY 1 cut(s) 406
PaeR7I CTCGAG 1 cut(s) 524
PceI AGGCCT 1 cut(s) 385
PciI ACATGT 1 cut(s) 402
PctI GAATGC 1 cut(s) 564
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 3 cut(s) 31, 106, 532
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PpuMI RGGWCCY 1 cut(s) 214
PscI ACATGT 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 151, 215, 360
PspPI GGNCC 2 cut(s) 214, 358
PspPPI RGGWCCY 1 cut(s) 214
PsuI RGATCY 3 cut(s) 52, 185, 304
PvuII CAGCTG 1 cut(s) 533
SacII CCGCGG 1 cut(s) 311
SaqAI TTAA 2 cut(s) 231, 567
SatI GCNGC 3 cut(s) 30, 105, 531
Sau3AI GATC 4 cut(s) 52, 185, 288, 304
Sau96I GGNCC 2 cut(s) 214, 358
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 1 cut(s) 588
SetI ASST 9 cut(s) 162, 175, 241, 276, 300, 353, 510, 535, 595
SfaNI GCATC 1 cut(s) 190
Sfr274I CTCGAG 1 cut(s) 524
Sfr303I CCGCGG 1 cut(s) 311
SgrBI CCGCGG 1 cut(s) 311
SinI GGWCC 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 524
SmlI CTYRAG 2 cut(s) 56, 524
SmoI CTYRAG 2 cut(s) 56, 524
Sse9I AATT 1 cut(s) 95
SseBI AGGCCT 1 cut(s) 385
SsiI CCGC 4 cut(s) 29, 308, 310, 441
SspMI CTAG 6 cut(s) 48, 65, 137, 174, 321, 387
StuI AGGCCT 1 cut(s) 385
StyD4I CCNGG 1 cut(s) 360
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 331, 600
TaqI TCGA 3 cut(s) 91, 486, 525
TasI AATT 1 cut(s) 95
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 2 cut(s) 231, 567
Tru9I TTAA 2 cut(s) 231, 567
TscAI CASTG 2 cut(s) 39, 336
TseI GCWGC 2 cut(s) 104, 530
TspDTI ATGAA 1 cut(s) 27
TspRI CASTG 2 cut(s) 39, 336
Van91I CCANNNNNTGG 1 cut(s) 189
VneI GTGCAC 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 214
XceI RCATGY 1 cut(s) 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 486
XhoI CTCGAG 1 cut(s) 524
XspI CTAG 6 cut(s) 48, 65, 137, 174, 321, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.