Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0019698

Physical Location & Seq

Genomic Coordinates Reverse (-)

19822805 .. 19830694

Gene Structure 7890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15891.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGATAAATGGTTGAAAGAGGTGAAAGCTGCTCAGAGTACCCTCCCAAAAGGCAAAAGATGTGTCTGTCAGGTTCGGTTCTTCTTAGTTGGGTTGGGCGGGTTCGACCAGAAATGCTATGCTTACACACAAGGCTACCCCTCTTCCCGAAAGCTTCGCGGGGACTACTTTACGACGACGGACGACCCAAATATCCAGATCCAATCGACCGGACTCACCCCGCATGCGGCGTCCACCGTCCTCCTTCATACCGGCCTAGTCGGAGGCGGCGGGGAAGCTTTAACAAGCCATCGACGGGTTGAGGAAGCTAATTTGGTTTTCCGATCTAGTTTTCCATCTTCGATCGGATGTTGGATCGATTTTTGGTTTGACTCCGTCGTCAATTGGTGGTTGGCCCGACGAGGCCTGGTTCAAATCTGCCGTCAAAGCGATGTTCTCATCAACGGTCGACGGTATTGCTTTTCTTGTATGAAACATTATGTAGAAGTTAAGTTGCTTAATGGGCAGGTGGCACAGTGCCCTCATGAAGGCCGTAAGACTTGGGTCAATATTGACAGTTGCGCACAATTCTTGGCACCTAAACTAGTTAAGGTTATGAGCCAAATAATCAAGGAATCTTTCATTCTTGTCACAGAGAAAGTTTATTGCCCAAATCCCGTGTTCTGCATTGATGTCCAAAATGGAGGTGTTACAATATACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

235

Amino Acids

26.37

Weight (kDa)

9.13

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15891 FvH4_4g15932 FvH4_5g30901 FvH4_6g37553
rosa_chinensis	RchiOBHm_MTg0498701
rosa_samantha	Rh1CG096700 Rh6AG380000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	496
AasI	GACNNNNNNGTC	1 cut(s)	377
Acc16I	TGCGCA	1 cut(s)	562
Acc36I	ACCTGC	1 cut(s)	496
AccB1I	GGYRCC	1 cut(s)	574
AccI	GTMKAC	1 cut(s)	448
AccII	CGCG	1 cut(s)	159
AciI	CCGC	6 cut(s)	99, 159, 221, 227, 267, 270
AclWI	GGATC	2 cut(s)	193, 362
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	3 cut(s)	226, 295, 527
AgsI	TTSAA	2 cut(s)	16, 413
AhlI	ACTAGT	1 cut(s)	583
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	4 cut(s)	29, 154, 278, 308
AluI	AGCT	4 cut(s)	29, 154, 278, 308
AlwI	GGATC	2 cut(s)	193, 362
AoxI	GGCC	4 cut(s)	253, 393, 403, 529
ApeKI	GCWGC	1 cut(s)	29
ArsI	GACNNNNNNTTYG	4 cut(s)	48, 80, 406, 438
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	394
AsuHPI	GGTGA	2 cut(s)	34, 208
BaeGI	GKGCMC	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	574
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	297, 343
BceAI	ACGGC	2 cut(s)	405, 516
BcgI	CGANNNNNNTGC	2 cut(s)	438, 472
BciT130I	CCWGG	1 cut(s)	407
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	3 cut(s)	257, 327, 584
BfuAI	ACCTGC	1 cut(s)	496
BisI	GCNGC	3 cut(s)	30, 228, 268
BlsI	GCNGC	3 cut(s)	31, 229, 269
Bme1390I	CCNGG	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	407
BoxI	GACNNNNGTC	1 cut(s)	542
Bsa29I	ATCGAT	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 295, 527
Bse118I	RCCGGY	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	407
BseCI	ATCGAT	1 cut(s)	357
BseGI	GGATG	1 cut(s)	353
BseLI	CCNNNNNNNGG	3 cut(s)	226, 295, 527
BseMII	CTCAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	521
BseXI	GCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	3 cut(s)	210, 345, 448
BshFI	GGCC	4 cut(s)	255, 395, 405, 531
BshNI	GGYRCC	1 cut(s)	574
BshVI	ATCGAT	1 cut(s)	357
BsiEI	CGRYCG	3 cut(s)	210, 345, 448
BsiSI	CCGG	2 cut(s)	210, 252
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	3 cut(s)	226, 295, 527
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	4 cut(s)	255, 395, 405, 531
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	4 cut(s)	198, 323, 342, 354
BspACI	CCGC	6 cut(s)	99, 159, 221, 227, 267, 270
BspANI	GGCC	4 cut(s)	255, 395, 405, 531
BspCNI	CTCAG	1 cut(s)	46
BspDI	ATCGAT	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	576
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	2 cut(s)	193, 362
BspT107I	GGYRCC	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssMI	GATC	4 cut(s)	198, 323, 342, 354
BssNI	GRCGYC	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	5 cut(s)	238, 446, 453, 516, 557
Bst6I	CTCTTC	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	33, 85
BstENI	CCTNNNNNAGG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	353
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	4 cut(s)	201, 326, 345, 357
BstMBI	GATC	4 cut(s)	198, 323, 342, 354
BstMCI	CGRYCG	3 cut(s)	210, 345, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	426, 502
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	227
BstPAI	GACNNNNGTC	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	521
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
Bsu15I	ATCGAT	1 cut(s)	357
BsuRI	GGCC	4 cut(s)	255, 395, 405, 531
BsuTUI	ATCGAT	1 cut(s)	357
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	521
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	1 cut(s)	225
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	1 cut(s)	563
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	394
ClaI	ATCGAT	1 cut(s)	357
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	2 cut(s)	224, 524
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	2 cut(s)	33, 85
DpnI	GATC	4 cut(s)	200, 325, 344, 356
DpnII	GATC	4 cut(s)	198, 323, 342, 354
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco147I	AGGCCT	1 cut(s)	405
EcoNI	CCTNNNNNAGG	1 cut(s)	525
EcoRII	CCWGG	1 cut(s)	405
FaeI	CATG	2 cut(s)	227, 527
FaiI	YATR	8 cut(s)	120, 225, 249, 470, 480, 525, 596, 697
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	223, 523
FauI	CCCGC	4 cut(s)	92, 152, 228, 263
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	3 cut(s)	30, 228, 268
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	3 cut(s)	30, 228, 268
FspBI	CTAG	3 cut(s)	257, 327, 584
FspI	TGCGCA	1 cut(s)	562
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	3 cut(s)	30, 228, 268
HaeIII	GGCC	4 cut(s)	255, 395, 405, 531
HapII	CCGG	2 cut(s)	210, 252
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	563
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	227, 527
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HincII	GTYRAC	1 cut(s)	449
HindII	GTYRAC	1 cut(s)	449
HindIII	AAGCTT	2 cut(s)	152, 276
HinfI	GANTC	3 cut(s)	213, 371, 614
HpaII	CCGG	2 cut(s)	210, 252
HphI	GGTGA	2 cut(s)	34, 208
Hpy166II	GTNNAC	2 cut(s)	234, 449
Hpy188I	TCNGA	4 cut(s)	36, 263, 323, 347
Hpy188III	TCNNGA	3 cut(s)	147, 196, 524
Hpy8I	GTNNAC	2 cut(s)	234, 449
Hpy99I	CGWCG	6 cut(s)	178, 181, 297, 380, 402, 453
HpyAV	CCTTC	2 cut(s)	254, 521
HpyCH4III	ACNGT	5 cut(s)	238, 446, 453, 516, 557
HpyCH4V	TGCA	1 cut(s)	666
HpyF10VI	GCNNNNNNNGC	2 cut(s)	426, 502
HpyF3I	CTNAG	2 cut(s)	33, 85
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	227, 527
HspAI	GCGC	1 cut(s)	561
Kzo9I	GATC	4 cut(s)	198, 323, 342, 354
LpnPI	CCDG	8 cut(s)	56, 122, 209, 223, 265, 392, 419, 491
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	3 cut(s)	257, 327, 584
MaeIII	GTNAC	2 cut(s)	628, 688
MalI	GATC	4 cut(s)	200, 325, 344, 356
MboI	GATC	4 cut(s)	198, 323, 342, 354
MboII	GAAGA	3 cut(s)	73, 135, 330
MfeI	CAATTG	1 cut(s)	382
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	3 cut(s)	310, 382, 566
MlyI	GAGTC	2 cut(s)	207, 365
MmeI	TCCRAC	2 cut(s)	241, 332
MnlI	CCTC	9 cut(s)	13, 53, 151, 251, 257, 295, 395, 531, 677
MseI	TTAA	4 cut(s)	281, 489, 498, 588
MspI	CCGG	2 cut(s)	210, 252
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	426, 502
NdeII	GATC	4 cut(s)	198, 323, 342, 354
NlaIII	CATG	2 cut(s)	227, 527
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	628
NsbI	TGCGCA	1 cut(s)	562
NspI	RCATGY	1 cut(s)	227
PaeI	GCATGC	1 cut(s)	227
PagI	TCATGA	1 cut(s)	523
PaqCI	CACCTGC	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	614
PflFI	GACNNNGTC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	31, 229, 269
Ple19I	CGATCG	1 cut(s)	345
PleI	GAGTC	2 cut(s)	207, 365
PpsI	GAGTC	2 cut(s)	207, 365
PshAI	GACNNNNGTC	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	198
PsyI	GACNNNGTC	1 cut(s)	374
PvuI	CGATCG	1 cut(s)	345
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SalI	GTCGAC	1 cut(s)	447
SaqAI	TTAA	4 cut(s)	281, 489, 498, 588
SatI	GCNGC	3 cut(s)	30, 228, 268
Sau3AI	GATC	4 cut(s)	198, 323, 342, 354
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	2 cut(s)	207, 365
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	521
SpeI	ACTAGT	1 cut(s)	583
SphI	GCATGC	1 cut(s)	227
Sse9I	AATT	3 cut(s)	310, 382, 566
SseBI	AGGCCT	1 cut(s)	405
SsiI	CCGC	6 cut(s)	99, 159, 221, 227, 267, 270
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	3 cut(s)	257, 327, 584
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	5 cut(s)	238, 446, 453, 516, 557
TaqI	TCGA	6 cut(s)	105, 206, 292, 341, 357, 448
TasI	AATT	3 cut(s)	310, 382, 566
TauI	GCSGC	2 cut(s)	230, 270
TfiI	GAWTC	1 cut(s)	614
Tru1I	TTAA	4 cut(s)	281, 489, 498, 588
Tru9I	TTAA	4 cut(s)	281, 489, 498, 588
TscAI	CASTG	1 cut(s)	521
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	4 cut(s)	236, 485, 540, 610
TspGWI	ACGGA	2 cut(s)	194, 364
TspRI	CASTG	1 cut(s)	521
Tth111I	GACNNNGTC	1 cut(s)	374
XagI	CCTNNNNNAGG	1 cut(s)	525
XceI	RCATGY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	448
XspI	CTAG	3 cut(s)	257, 327, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.