Rh6AG380000

Uncharacterized ACR, COG1678

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
57872413 .. 57874198
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG380000.1

Sequence Viewer

Length: 393 bp
ATGGGAGGAAATTACGGTTTTGTACTATCACCATTCTGTTTCGTACAAATATGGAGGGAGGCTTCGAGCGCAGAACATTTTGAGTTCAATTCGTCCCTAAATTGGTCGCTGAAGAGTCAGGAAGAGTTGAAAGCTTTCGTTGATTCAACTGACAAAGCTTTGGTCGTGTTTGAGTTTTGTGAATGGACTCCTAAATTGGTGGCCAAGAGGAAGATGAATGGGACTGATCACAGTGGCTTTGGGGAATTTTTTGGGTTAAACTTGAATGCAGAGACAAATAGAACCGACTGGCGGAAGAATAACCAGAAGGGTATGGAAACTGCAAGGATGAAGTGTAATGTTGATAATGAGCTTGGTGCAGTTCCTTGGGTTGGGGATACATGCACATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

14.86

Weight (kDa)

5.38

Isoelectric Point (pI)

14.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019698)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 292
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 390
AfaI GTAC 2 cut(s) 24, 45
AfiI CCNNNNNNNGG 3 cut(s) 102, 291, 371
AgsI TTSAA 4 cut(s) 88, 130, 147, 265
AluBI AGCT 3 cut(s) 134, 158, 352
AluI AGCT 3 cut(s) 134, 158, 352
Alw26I GTCTC 1 cut(s) 266
AoxI GGCC 1 cut(s) 201
ApoI RAATTY 1 cut(s) 245
ArsI GACNNNNNNTTYG 2 cut(s) 147, 179
Asp700I GAANNNNTTC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 21
BalI TGGCCA 1 cut(s) 203
BciVI GTATCC 1 cut(s) 370
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 266
BfuI GTATCC 1 cut(s) 370
BsaJI CCNNGG 1 cut(s) 365
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 291, 371
Bse1I ACTGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 3 cut(s) 102, 291, 371
BseNI ACTGG 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 1 cut(s) 203
BslFI GGGAC 2 cut(s) 79, 235
BslI CCNNNNNNNGG 3 cut(s) 102, 291, 371
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 2 cut(s) 79, 235
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 1 cut(s) 292
BspANI GGCC 1 cut(s) 203
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 17, 233
Bst6I CTCTTC 2 cut(s) 107, 117
BstF5I GGATG 1 cut(s) 333
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 384
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 238
CfoI GCGC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 23, 44
CviAII CATG 2 cut(s) 381, 387
CviJI RGCY 6 cut(s) 62, 134, 158, 203, 237, 352
CviKI_1 RGCY 6 cut(s) 62, 134, 158, 203, 237, 352
CviQI GTAC 2 cut(s) 23, 44
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DraIII CACNNNGTG 1 cut(s) 390
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 107, 117
EarI CTCTTC 2 cut(s) 107, 117
EciI GGCGGA 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 2 cut(s) 384, 390
FaiI YATR 4 cut(s) 52, 314, 382, 388
FaqI GGGAC 2 cut(s) 79, 235
FatI CATG 2 cut(s) 380, 386
FbaI TGATCA 1 cut(s) 226
FokI GGATG 1 cut(s) 340
GlaI GCGC 1 cut(s) 70
HaeIII GGCC 1 cut(s) 203
HhaI GCGC 1 cut(s) 71
Hin1II CATG 2 cut(s) 384, 390
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HindIII AAGCTT 2 cut(s) 132, 156
HinfI GANTC 3 cut(s) 115, 143, 187
HphI GGTGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 2 cut(s) 17, 233
HpyCH4V TGCA 4 cut(s) 269, 323, 359, 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
Hsp92II CATG 2 cut(s) 384, 390
HspAI GCGC 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 226
LpnPI CCDG 3 cut(s) 104, 274, 317
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 4 cut(s) 124, 134, 223, 307
MlsI TGGCCA 1 cut(s) 203
MluCI AATT 5 cut(s) 10, 88, 100, 194, 245
MluNI TGGCCA 1 cut(s) 203
MlyI GAGTC 2 cut(s) 124, 181
MnlI CCTC 3 cut(s) 48, 52, 201
Mox20I TGGCCA 1 cut(s) 203
MroXI GAANNNNTTC 1 cut(s) 134
MscI TGGCCA 1 cut(s) 203
MseI TTAA 1 cut(s) 257
MslI CAYNNNNRTG 1 cut(s) 385
Msp20I TGGCCA 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 1 cut(s) 226
NlaIII CATG 2 cut(s) 384, 390
NspI RCATGY 1 cut(s) 384
PctI GAATGC 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 143
PleI GAGTC 2 cut(s) 123, 181
PpsI GAGTC 2 cut(s) 123, 181
RsaI GTAC 2 cut(s) 24, 45
RsaNI GTAC 2 cut(s) 23, 44
RseI CAYNNNNRTG 1 cut(s) 385
SaqAI TTAA 1 cut(s) 257
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 2 cut(s) 124, 181
SetI ASST 3 cut(s) 136, 160, 354
SmiMI CAYNNNNRTG 1 cut(s) 385
Sse9I AATT 5 cut(s) 10, 88, 100, 194, 245
SsiI CCGC 1 cut(s) 292
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 2 cut(s) 17, 233
TaqI TCGA 1 cut(s) 65
TasI AATT 5 cut(s) 10, 88, 100, 194, 245
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TscAI CASTG 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 230, 344
TspRI CASTG 1 cut(s) 238
XapI RAATTY 1 cut(s) 245
XceI RCATGY 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.