FvH4_6g37553

Uncharacterized ACR, COG1678

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0019698
Physical Location & Seq
Reverse (-)
29589465 .. 29592944
3480 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37553.t1

Sequence Viewer

Length: 606 bp
ATGGCTAAGCAACAAACCATACTATACATACAAAAGGCCTTAGAGTACATAGGAGCACATAAGAGCAACATCTTTAGCATCACCATTTTGTCCTCCGATGATGTTCATGCTCTGAACCCAAGGCTGGAACAACCAACTCCAACAGATCGACTCCCCCTCGATCTCTTGCAGAACGTACATAAGGCTGAAGTAAAACCAATTTTGAGATCGACCGGACTCACCCCACATGCACTGTTCACCGTCCTCCTTCTCACCGGTCTAGTCGGCGGCGGCGGGGAAGAAGCTTTCATAGCCCAGCGGCGGTTTGCGGAAGCCAGTCTGGTTTTCCATCATCGATCGCTGATGGTGTTGCATAGAAACACAGAGAAGATGGTGGCCACTGCGATCGGTGCTGCTTCGGAATGGGAGGAAATTACAGTTTTGTACTATCACAATTCTGTTTCGTACAAATACGGAGGGAGGCTTCAAGCAAACAACATTTTGGCGTCAATTCGTCCTTATTTGTCAGTTTTAGATGAAGATAGAGCTTCCATTCAAATTGCTCAAGAGTCCGGAAGAGTTGAAGGCTTTCGTAGATTCGACTTACAAAGCTTTGGTTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF179 Thioredoxin

Protein Analysis

202

Amino Acids

22.41

Weight (kDa)

7.11

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g15891 FvH4_4g15932 FvH4_5g30901 FvH4_6g37553
rosa_chinensis RchiOBHm_MTg0498701
rosa_samantha Rh1CG096700 Rh6AG380000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 551
AciI CCGC 6 cut(s) 267, 270, 273, 298, 301, 308
AcoI YGGCCR 1 cut(s) 375
AcuI CTGAAG 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 485
AfaI GTAC 4 cut(s) 47, 177, 425, 446
AfiI CCNNNNNNNGG 2 cut(s) 124, 300
AgeI ACCGGT 1 cut(s) 254
AgsI TTSAA 3 cut(s) 467, 536, 563
AluBI AGCT 3 cut(s) 284, 527, 591
AluI AGCT 3 cut(s) 284, 527, 591
Alw21I GWGCWC 1 cut(s) 58
Aor13HI TCCGGA 1 cut(s) 551
AoxI GGCC 2 cut(s) 36, 375
ApeKI GCWGC 1 cut(s) 392
AsiGI ACCGGT 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 567
AsuHPI GGTGA 4 cut(s) 73, 211, 229, 244
BalI TGGCCA 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 379
BccI CCATC 3 cut(s) 336, 337, 364
BfaI CTAG 1 cut(s) 260
BisI GCNGC 4 cut(s) 268, 271, 299, 393
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 4 cut(s) 269, 272, 300, 394
BmsI GCATC 1 cut(s) 87
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 528
Bsa29I ATCGAT 1 cut(s) 334
BsaHI GRCGYC 1 cut(s) 485
BsaJI CCNNGG 1 cut(s) 119
BsaWI WCCGGW 3 cut(s) 212, 254, 551
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 300
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 315
BseAI TCCGGA 1 cut(s) 551
BseCI ATCGAT 1 cut(s) 334
BseDI CCNNGG 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 124, 300
BseNI ACTGG 1 cut(s) 315
BseXI GCAGC 1 cut(s) 379
BseYI CCCAGC 1 cut(s) 294
Bsh1285I CGRYCG 3 cut(s) 213, 338, 387
BshFI GGCC 2 cut(s) 38, 377
BshTI ACCGGT 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 334
BsiEI CGRYCG 3 cut(s) 213, 338, 387
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 3 cut(s) 213, 255, 552
BslI CCNNNNNNNGG 2 cut(s) 124, 300
BsnI GGCC 2 cut(s) 38, 377
Bsp1286I GDGCHC 1 cut(s) 58
Bsp13I TCCGGA 1 cut(s) 551
Bsp143I GATC 5 cut(s) 145, 160, 206, 335, 384
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 6 cut(s) 267, 270, 273, 298, 301, 308
BspANI GGCC 2 cut(s) 38, 377
BspDI ATCGAT 1 cut(s) 334
BspEI TCCGGA 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 1 cut(s) 315
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 5 cut(s) 145, 160, 206, 335, 384
BssNI GRCGYC 1 cut(s) 485
BssT1I CCWWGG 1 cut(s) 119
Bst4CI ACNGT 3 cut(s) 234, 241, 418
Bst6I CTCTTC 1 cut(s) 550
BstACI GRCGYC 1 cut(s) 485
BstDEI CTNAG 2 cut(s) 6, 40
BstKTI GATC 5 cut(s) 148, 163, 209, 338, 387
BstMBI GATC 5 cut(s) 145, 160, 206, 335, 384
BstMCI CGRYCG 3 cut(s) 213, 338, 387
BstMWI GCNNNNNNNGC 2 cut(s) 290, 389
BstNSI RCATGY 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 379
Bsu15I ATCGAT 1 cut(s) 334
BsuRI GGCC 2 cut(s) 38, 377
BsuTUI ATCGAT 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 2 cut(s) 230, 378
Cfr10I RCCGGY 1 cut(s) 254
ClaI ATCGAT 1 cut(s) 334
CseI GACGC 1 cut(s) 474
Csp6I GTAC 4 cut(s) 46, 176, 424, 445
CspAI ACCGGT 1 cut(s) 254
CviAII CATG 2 cut(s) 107, 227
CviQI GTAC 4 cut(s) 46, 176, 424, 445
DdeI CTNAG 2 cut(s) 6, 40
DpnI GATC 5 cut(s) 147, 162, 208, 337, 386
DpnII GATC 5 cut(s) 145, 160, 206, 335, 384
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 550
EarI CTCTTC 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 119
Eco147I AGGCCT 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 2 cut(s) 110, 230
FatI CATG 2 cut(s) 106, 226
FauI CCCGC 1 cut(s) 266
Fnu4HI GCNGC 4 cut(s) 268, 271, 299, 393
Fsp4HI GCNGC 4 cut(s) 268, 271, 299, 393
FspBI CTAG 1 cut(s) 260
GluI GCNGC 4 cut(s) 268, 271, 299, 393
GsaI CCCAGC 1 cut(s) 298
HaeIII GGCC 2 cut(s) 38, 377
HapII CCGG 3 cut(s) 213, 255, 552
HgaI GACGC 1 cut(s) 474
Hin1I GRCGYC 1 cut(s) 485
Hin1II CATG 2 cut(s) 110, 230
HindIII AAGCTT 2 cut(s) 282, 589
HinfI GANTC 4 cut(s) 150, 216, 548, 576
HpaII CCGG 3 cut(s) 213, 255, 552
HphI GGTGA 4 cut(s) 73, 211, 229, 244
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 3 cut(s) 97, 114, 400
Hpy188III TCNNGA 2 cut(s) 545, 552
Hpy8I GTNNAC 1 cut(s) 237
HpyAV CCTTC 2 cut(s) 257, 557
HpyCH4III ACNGT 3 cut(s) 234, 241, 418
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 3 cut(s) 169, 230, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 389
HpyF3I CTNAG 2 cut(s) 6, 40
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 485
Hsp92II CATG 2 cut(s) 110, 230
Kpn2I TCCGGA 1 cut(s) 551
Kzo9I GATC 5 cut(s) 145, 160, 206, 335, 384
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 7 cut(s) 110, 226, 268, 305, 308, 328, 565
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 174
MalI GATC 5 cut(s) 147, 162, 208, 337, 386
MboI GATC 5 cut(s) 145, 160, 206, 335, 384
MboII GAAGA 4 cut(s) 290, 379, 530, 567
MhlI GDGCHC 1 cut(s) 58
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 5 cut(s) 198, 411, 433, 489, 537
MluNI TGGCCA 1 cut(s) 377
MlyI GAGTC 3 cut(s) 144, 210, 557
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 6 cut(s) 103, 167, 254, 400, 449, 453
Mox20I TGGCCA 1 cut(s) 377
MroI TCCGGA 1 cut(s) 551
MroXI GAANNNNTTC 1 cut(s) 567
MscI TGGCCA 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 3 cut(s) 213, 255, 552
MwoI GCNNNNNNNGC 2 cut(s) 290, 389
NdeII GATC 5 cut(s) 145, 160, 206, 335, 384
NlaIII CATG 2 cut(s) 110, 230
NspI RCATGY 1 cut(s) 230
PceI AGGCCT 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 1 cut(s) 576
PinAI ACCGGT 1 cut(s) 254
PkrI GCNGC 4 cut(s) 269, 272, 300, 394
Ple19I CGATCG 2 cut(s) 338, 387
PleI GAGTC 3 cut(s) 144, 210, 556
PpsI GAGTC 3 cut(s) 144, 210, 556
PspFI CCCAGC 1 cut(s) 294
PvuI CGATCG 2 cut(s) 338, 387
RsaI GTAC 4 cut(s) 47, 177, 425, 446
RsaNI GTAC 4 cut(s) 46, 176, 424, 445
SatI GCNGC 4 cut(s) 268, 271, 299, 393
Sau3AI GATC 5 cut(s) 145, 160, 206, 335, 384
SchI GAGTC 3 cut(s) 144, 210, 557
SduI GDGCHC 1 cut(s) 58
SetI ASST 4 cut(s) 177, 286, 529, 593
SfaNI GCATC 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
Sse9I AATT 5 cut(s) 198, 411, 433, 489, 537
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 6 cut(s) 267, 270, 273, 298, 301, 308
SspMI CTAG 1 cut(s) 260
StuI AGGCCT 1 cut(s) 38
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 3 cut(s) 234, 241, 418
TaiI ACGT 1 cut(s) 177
TaqI TCGA 5 cut(s) 148, 159, 209, 334, 579
TasI AATT 5 cut(s) 198, 411, 433, 489, 537
TatI WGTACW 2 cut(s) 45, 423
TauI GCSGC 3 cut(s) 270, 273, 301
TfiI GAWTC 1 cut(s) 576
TscAI CASTG 2 cut(s) 237, 385
TseI GCWGC 1 cut(s) 392
TspDTI ATGAA 3 cut(s) 95, 277, 531
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 2 cut(s) 237, 385
XceI RCATGY 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.