Rh1CG096700

Uncharacterized ACR, COG1678

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
20720787 .. 20721068
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG096700.1

Sequence Viewer

Length: 282 bp
ATGGTGGCAACTGCGATCGGTGCTGCTTCAGAATGGGAGGAAATTACGGTTTTGTACTATCACCATTCTGTTTCGTACAAATATGGAGGGAGGCTTCGAGCGCAGAACATTTTGAGTTCAATTCGTCCCTATGTGTCGGTTTCAGCTGAAGAACTTCCATTTAAATCGCTGAAGAGTCCGGAAGAGTTGAAAGCTTTCGTTGATTCAACTGACAAAGCTTTGGTTGTGTTTGAGTTTTGTGAATGGACTCCTAAATTGGTGGCCAAGAGGAAGATGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.56

Weight (kDa)

7.84

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019698)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 178
AcoI YGGCCR 1 cut(s) 261
AcuI CTGAAG 3 cut(s) 12, 168, 191
AfaI GTAC 2 cut(s) 56, 77
AgsI TTSAA 3 cut(s) 120, 190, 207
AluBI AGCT 3 cut(s) 146, 194, 218
AluI AGCT 3 cut(s) 146, 194, 218
Aor13HI TCCGGA 1 cut(s) 178
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 23
Asp700I GAANNNNTTC 2 cut(s) 153, 194
AspLEI GCGC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 53
BalI TGGCCA 1 cut(s) 263
BbvI GCAGC 1 cut(s) 10
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BsaWI WCCGGW 1 cut(s) 178
BseAI TCCGGA 1 cut(s) 178
BseXI GCAGC 1 cut(s) 10
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 263
BsiEI CGRYCG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 111
BsnI GGCC 1 cut(s) 263
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 1 cut(s) 15
BspANI GGCC 1 cut(s) 263
BspEI TCCGGA 1 cut(s) 178
BssMI GATC 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 2 cut(s) 167, 177
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 2 cut(s) 20, 100
BstV1I GCAGC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 263
CfoI GCGC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 55, 76
CviJI RGCY 5 cut(s) 94, 146, 194, 218, 263
CviKI_1 RGCY 5 cut(s) 94, 146, 194, 218, 263
CviQI GTAC 2 cut(s) 55, 76
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
DraI TTTAAA 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 2 cut(s) 167, 177
EarI CTCTTC 2 cut(s) 167, 177
Eco57I CTGAAG 3 cut(s) 12, 168, 191
FaiI YATR 3 cut(s) 84, 132, 280
FaqI GGGAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 24
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 263
HapII CCGG 1 cut(s) 179
HhaI GCGC 1 cut(s) 103
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HindIII AAGCTT 2 cut(s) 192, 216
HinfI GANTC 3 cut(s) 175, 203, 247
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 100
HspAI GCGC 1 cut(s) 101
Kpn2I TCCGGA 1 cut(s) 178
Kzo9I GATC 1 cut(s) 15
LpnPI CCDG 1 cut(s) 192
Lsp1109I GCAGC 1 cut(s) 10
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 3 cut(s) 161, 184, 194
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 3 cut(s) 42, 120, 254
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 2 cut(s) 184, 241
MnlI CCTC 4 cut(s) 31, 80, 84, 261
Mox20I TGGCCA 1 cut(s) 263
MroI TCCGGA 1 cut(s) 178
MroXI GAANNNNTTC 2 cut(s) 153, 194
MscI TGGCCA 1 cut(s) 263
MseI TTAA 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 20, 100
NdeII GATC 1 cut(s) 15
PdmI GAANNNNTTC 2 cut(s) 153, 194
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 25
Ple19I CGATCG 1 cut(s) 18
PleI GAGTC 2 cut(s) 183, 241
PpsI GAGTC 2 cut(s) 183, 241
PvuI CGATCG 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 2 cut(s) 56, 77
RsaNI GTAC 2 cut(s) 55, 76
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 15
SchI GAGTC 2 cut(s) 184, 241
SetI ASST 3 cut(s) 148, 196, 220
SgeI CNNG 3 cut(s) 110, 191, 277
SmiI ATTTAAAT 1 cut(s) 163
Sse9I AATT 3 cut(s) 42, 120, 254
SwaI ATTTAAAT 1 cut(s) 163
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 1 cut(s) 97
TasI AATT 3 cut(s) 42, 120, 254
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseI GCWGC 1 cut(s) 23
XmnI GAANNNNTTC 2 cut(s) 153, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.