FvH4_4g18340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017546
Physical Location & Seq
Reverse (-)
22268682 .. 22269044
363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18340.t1

Sequence Viewer

Length: 363 bp
ATGATAGATCAAGACAGACAAGGTGCAGGAGCACCCCATGGAGTTCTACTAGTAGTTGTGGTGATGTTGGTCATATTCGTCCCCTTCTTCCTCGGCGAGCAAGGTGAAGCCATAACCGAAGGCTTCGCGGAGCTTCTCAGCCCCGTCGGGCTTCTCCTCCTCCCCGTCATCCTCCTCCTCACCATCCAGTTCTTGTCATCTCCTCAAGGCTCTTTTCTCTCATCCATGTTCTCCACCGGAGAGCCCGACACCATCCACAGGGTCAGCGGCTCCCCGGTGGGCGTCGCATTGTTTCTTCTACTAGTTTTGTTTCTTCTCTACAATCGCATATCGATCTTCGGCGGTGGCGACGACGACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.8

Weight (kDa)

4.21

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06890
fragaria_vesca FvH4_4g18340
malus_domestica MD13G1167200.v1.1
prunus_persica Prupe.1G134500_v2.0.a1
pyrus_communis pycom13g14300
rosa_chinensis RchiOBHm_Chr4g0422811
rosa_laevigata RLG00000007603
rosa_multiflora Rmu_co8147480.1_g000001 Rmu_sc0000830.1_g000047
rosa_roxburghii Rroxscaffold_5G00364660
rosa_rugosa Rorug04G0181600
rosa_wichuraiana Rw4G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 128
AciI CCGC 3 cut(s) 128, 267, 342
AcyI GRCGYC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 258
AhlI ACTAGT 2 cut(s) 49, 301
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 73, 116, 172
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 34
BccI CCATC 2 cut(s) 191, 260
BcnI CCSGG 1 cut(s) 275
BcuI ACTAGT 2 cut(s) 49, 301
BfaI CTAG 2 cut(s) 50, 302
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 275
Bsa29I ATCGAT 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 37, 91, 273
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 187
BseCI ATCGAT 1 cut(s) 332
BseDI CCNNGG 3 cut(s) 37, 91, 273
BseGI GGATG 4 cut(s) 168, 183, 221, 252
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 5 cut(s) 146, 149, 164, 167, 192
BsgI GTGCAG 1 cut(s) 45
Bsh1236I CGCG 1 cut(s) 128
BshVI ATCGAT 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 2 cut(s) 237, 275
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 34, 246
Bsp143I GATC 2 cut(s) 7, 333
Bsp19I CCATGG 1 cut(s) 37
BspACI CCGC 3 cut(s) 128, 267, 342
BspCNI CTCAG 1 cut(s) 150
BspDI ATCGAT 1 cut(s) 332
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 271
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 3 cut(s) 37, 91, 273
BssMI GATC 2 cut(s) 7, 333
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 137
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 4 cut(s) 168, 183, 221, 252
BstFNI CGCG 1 cut(s) 128
BstKTI GATC 2 cut(s) 10, 336
BstMBI GATC 2 cut(s) 7, 333
BstSCI CCNGG 1 cut(s) 273
BstUI CGCG 1 cut(s) 128
Bsu15I ATCGAT 1 cut(s) 332
BsuTUI ATCGAT 1 cut(s) 332
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 4 cut(s) 168, 183, 221, 252
Cac8I GCNNGC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 332
CseI GACGC 1 cut(s) 271
CviAII CATG 2 cut(s) 38, 226
CviJI RGCY 8 cut(s) 110, 123, 133, 141, 151, 210, 244, 270
CviKI_1 RGCY 8 cut(s) 110, 123, 133, 141, 151, 210, 244, 270
DdeI CTNAG 1 cut(s) 137
DpnI GATC 2 cut(s) 9, 335
DpnII GATC 2 cut(s) 7, 333
Eco130I CCWWGG 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 2 cut(s) 41, 229
FaiI YATR 5 cut(s) 39, 74, 113, 227, 329
FaqI GGGAC 1 cut(s) 65
FatI CATG 2 cut(s) 37, 225
Fnu4HI GCNGC 1 cut(s) 268
FokI GGATG 4 cut(s) 155, 170, 208, 239
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 268
FspBI CTAG 2 cut(s) 50, 302
GluI GCNGC 1 cut(s) 268
HapII CCGG 2 cut(s) 237, 275
HgaI GACGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 2 cut(s) 41, 229
HpaII CCGG 2 cut(s) 237, 275
HphI GGTGA 3 cut(s) 73, 116, 172
Hpy188III TCNNGA 1 cut(s) 11
Hpy99I CGWCG 5 cut(s) 149, 287, 353, 356, 359
HpyAV CCTTC 2 cut(s) 94, 113
HpyCH4V TGCA 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 137
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 2 cut(s) 41, 229
Kzo9I GATC 2 cut(s) 7, 333
LmnI GCTCC 3 cut(s) 29, 130, 275
LpnPI CCDG 5 cut(s) 12, 200, 244, 250, 288
MaeI CTAG 2 cut(s) 50, 302
MalI GATC 2 cut(s) 9, 335
MboI GATC 2 cut(s) 7, 333
MboII GAAGA 4 cut(s) 79, 287, 305, 328
MhlI GDGCHC 2 cut(s) 34, 246
MnlI CCTC 7 cut(s) 101, 167, 170, 182, 185, 188, 213
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 2 cut(s) 237, 275
MspR9I CCNGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 128
NciI CCSGG 1 cut(s) 275
NcoI CCATGG 1 cut(s) 37
NdeII GATC 2 cut(s) 7, 333
NlaIII CATG 2 cut(s) 41, 229
NlaIV GGNNCC 1 cut(s) 271
NmeAIII GCCGAG 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PkrI GCNGC 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 271
SatI GCNGC 1 cut(s) 268
Sau3AI GATC 2 cut(s) 7, 333
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 2 cut(s) 34, 246
SetI ASST 3 cut(s) 25, 106, 135
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SpeI ACTAGT 2 cut(s) 49, 301
SsiI CCGC 3 cut(s) 128, 267, 342
SspMI CTAG 2 cut(s) 50, 302
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 37
TaqI TCGA 1 cut(s) 332
TauI GCSGC 1 cut(s) 270
XspI CTAG 2 cut(s) 50, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.