Prupe.1G134500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017546
Physical Location & Seq
Forward (+)
10632045 .. 10633385
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G134500.1

Sequence Viewer

Length: 363 bp
ATGATAGATCAAGAGAGACAAGCTGGAACTGCGCCCCATGGGATTCTACTGGCAGTTGTGGTTGTGGCAGTGATCGTGGTGCCGTTTTTTCTCGGTGACCAAGGCGAGGCCATAACCGAAGGCATTTCTGAGCTCTTGAGCCCTGTGGGTCTTCTTCTCTTGCCCATTATTCTCCTCCTCGCCATCCAGTTTCTGTCTTCGGATCGCGGCTCTTTCGTCTCCTCCATGTTCTCAAACGGGGAGCCTGACACCATTCACAGGGTCAGCGGCTCCCCTGTTGGCGTTGCATTGTTTCTCGTCCTCATCCTTTTCCTTCTTTACAACCGGATATCGATCTTCGGCGGCGGCGACGACGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.72

Weight (kDa)

4.26

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06890
fragaria_vesca FvH4_4g18340
malus_domestica MD13G1167200.v1.1
prunus_persica Prupe.1G134500_v2.0.a1
pyrus_communis pycom13g14300
rosa_chinensis RchiOBHm_Chr4g0422811
rosa_laevigata RLG00000007603
rosa_multiflora Rmu_co8147480.1_g000001 Rmu_sc0000830.1_g000047
rosa_roxburghii Rroxscaffold_5G00364660
rosa_rugosa Rorug04G0181600
rosa_wichuraiana Rw4G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AccII CGCG 1 cut(s) 207
AciI CCGC 4 cut(s) 207, 267, 342, 345
AclWI GGATC 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 106, 258
AluBI AGCT 2 cut(s) 23, 133
AluI AGCT 2 cut(s) 23, 133
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 10, 223
AlwI GGATC 1 cut(s) 210
AlwNI CAGNNNCTG 1 cut(s) 193
AoxI GGCC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 107
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 2 cut(s) 135, 143
BbsI GAAGAC 2 cut(s) 143, 189
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 10, 223
BisI GCNGC 4 cut(s) 208, 268, 343, 346
BlsI GCNGC 4 cut(s) 209, 269, 344, 347
BmiI GGNNCC 3 cut(s) 81, 243, 271
BpiI GAAGAC 2 cut(s) 143, 189
BpuEI CTTGAG 1 cut(s) 157
Bsa29I ATCGAT 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 37, 100
BsaWI WCCGGW 1 cut(s) 324
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 258
Bse1I ACTGG 2 cut(s) 54, 187
Bse8I GATNNNNATC 1 cut(s) 332
BseCI ATCGAT 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 37, 100
BseGI GGATG 2 cut(s) 183, 303
BseJI GATNNNNATC 1 cut(s) 332
BseLI CCNNNNNNNGG 2 cut(s) 106, 258
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 54, 187
BseRI GAGGAG 3 cut(s) 164, 167, 211
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 110
BshNI GGYRCC 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 325
BslI CCNNNNNNNGG 2 cut(s) 106, 258
BsmAI GTCTC 2 cut(s) 10, 223
BsmBI CGTCTC 1 cut(s) 223
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 135, 143
Bsp143I GATC 4 cut(s) 7, 72, 202, 333
Bsp19I CCATGG 1 cut(s) 37
BspACI CCGC 4 cut(s) 207, 267, 342, 345
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 121
BspDI ATCGAT 1 cut(s) 332
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 3 cut(s) 81, 243, 271
BspPI GGATC 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 79
BsrI ACTGG 2 cut(s) 54, 187
BssECI CCNNGG 2 cut(s) 37, 100
BssMI GATC 4 cut(s) 7, 72, 202, 333
BssT1I CCWWGG 2 cut(s) 37, 100
BstDEI CTNAG 1 cut(s) 129
BstDSI CCRYGG 1 cut(s) 37
BstEII GGTNACC 1 cut(s) 95
BstF5I GGATG 2 cut(s) 183, 303
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 4 cut(s) 10, 75, 205, 336
BstMAI GTCTC 2 cut(s) 10, 223
BstMBI GATC 4 cut(s) 7, 72, 202, 333
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstPI GGTNACC 1 cut(s) 95
BstUI CGCG 1 cut(s) 207
BstV2I GAAGAC 2 cut(s) 143, 189
Bsu15I ATCGAT 1 cut(s) 332
BsuRI GGCC 1 cut(s) 110
BsuTUI ATCGAT 1 cut(s) 332
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 2 cut(s) 183, 303
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 1 cut(s) 34
ClaI ATCGAT 1 cut(s) 332
CviAII CATG 2 cut(s) 38, 226
CviJI RGCY 7 cut(s) 23, 110, 133, 141, 210, 244, 270
CviKI_1 RGCY 7 cut(s) 23, 110, 133, 141, 210, 244, 270
DdeI CTNAG 1 cut(s) 129
DpnI GATC 4 cut(s) 9, 74, 204, 335
DpnII GATC 4 cut(s) 7, 72, 202, 333
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 2 cut(s) 37, 100
Eco24I GRGCYC 2 cut(s) 135, 143
Eco32I GATATC 1 cut(s) 330
Eco53kI GAGCTC 1 cut(s) 133
Eco91I GGTNACC 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 133
EcoO65I GGTNACC 1 cut(s) 95
EcoRV GATATC 1 cut(s) 330
EcoT14I CCWWGG 2 cut(s) 37, 100
EcoT38I GRGCYC 2 cut(s) 135, 143
ErhI CCWWGG 2 cut(s) 37, 100
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 2 cut(s) 41, 229
FaiI YATR 3 cut(s) 39, 113, 227
FatI CATG 2 cut(s) 37, 225
Fnu4HI GCNGC 4 cut(s) 208, 268, 343, 346
FokI GGATG 2 cut(s) 170, 290
FriOI GRGCYC 2 cut(s) 135, 143
Fsp4HI GCNGC 4 cut(s) 208, 268, 343, 346
GlaI GCGC 1 cut(s) 33
GluI GCNGC 4 cut(s) 208, 268, 343, 346
HaeIII GGCC 1 cut(s) 110
HapII CCGG 1 cut(s) 325
HhaI GCGC 1 cut(s) 34
Hin1II CATG 2 cut(s) 41, 229
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 325
HphI GGTGA 1 cut(s) 107
Hpy188I TCNGA 2 cut(s) 130, 202
Hpy188III TCNNGA 2 cut(s) 11, 136
Hpy99I CGWCG 2 cut(s) 353, 356
HpyAV CCTTC 2 cut(s) 113, 323
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 2 cut(s) 41, 229
HspAI GCGC 1 cut(s) 32
Kzo9I GATC 4 cut(s) 7, 72, 202, 333
LmnI GCTCC 2 cut(s) 241, 275
LpnPI CCDG 8 cut(s) 9, 35, 156, 200, 244, 258, 288, 338
MaeIII GTNAC 1 cut(s) 95
MalI GATC 4 cut(s) 9, 74, 204, 335
MboI GATC 4 cut(s) 7, 72, 202, 333
MboII GAAGA 4 cut(s) 143, 146, 189, 328
MhlI GDGCHC 2 cut(s) 135, 143
MnlI CCTC 5 cut(s) 100, 185, 188, 232, 311
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 1 cut(s) 325
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 29
NcoI CCATGG 1 cut(s) 37
NdeII GATC 4 cut(s) 7, 72, 202, 333
NlaIII CATG 2 cut(s) 41, 229
NlaIV GGNNCC 3 cut(s) 81, 243, 271
NmuCI GTSAC 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 4 cut(s) 209, 269, 344, 347
Psp124BI GAGCTC 1 cut(s) 135
PspEI GGTNACC 1 cut(s) 95
PspN4I GGNNCC 3 cut(s) 81, 243, 271
PstNI CAGNNNCTG 1 cut(s) 193
SacI GAGCTC 1 cut(s) 135
SatI GCNGC 4 cut(s) 208, 268, 343, 346
Sau3AI GATC 4 cut(s) 7, 72, 202, 333
SduI GDGCHC 2 cut(s) 135, 143
SetI ASST 2 cut(s) 25, 135
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
SsiI CCGC 4 cut(s) 207, 267, 342, 345
SstI GAGCTC 1 cut(s) 135
StyI CCWWGG 2 cut(s) 37, 100
TaqI TCGA 1 cut(s) 332
TauI GCSGC 4 cut(s) 210, 270, 345, 348
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspRI CASTG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.