Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010192

Physical Location & Seq

Genomic Coordinates Forward (+)

31795705 .. 31803176

Gene Structure 7472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0181600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCGGCGAACTCAATGGTTAGATCCTTTCTTCAGGTTGCTGCTACAGAAGAGGTTGCTCCTCCTCTCAGAGTTGTTCAGATCGAAGGACTGGTTATCTTGAAGATAATCAAGCACTGCAAGGAGTTTTCGCCGGCTCTGGTCACCGGCCAACTTCTTGGCTTGGATGTTGGCAGTGTTCTTGAAGTCACTAATTGTTTCCCATTCCCGATTAGGGAGGAGGATGAAGAGATTGAAGCTGATGGTGCCAATTACCAGCTCGAGATGATGAGATGTTTGAGAGAGGTGAATGTTGACAATAACACTGTTGGATGGTACCAAACTGCAGTTTGTTTTAAACACAGGTACCAATCCACATTGTTGGGTTCTTTTCAAACGGTGGAGTTGATTGAGACATTCATGAACTACCAGGAAAATATTAGACGGTGTGTGTGCATCATTTATGATCCATTGAAATCCAATCAGGGAGTCTTAGCACTGAAGGCATTGAAGCTTTCTGATTCATTCATGGAGCTCTACCGCAGTAACAATTTTACAGGGGAGAAGTTGAGGGAGAAAAACCTTTCATGGGTGGATATCTTTGAGGAAATACCTATCAAAGTTTCAAACTCTGCACTTATTAGTGCATTTATGACGGAGTTGGAAGCTGATACACCTGTTATCCAGTGTGATTATGATCGTCTGCAATTATCAACTAGTCCATTTCTAGAGAGGAATATGGAATTTCTTATTGAGTGCATGGATGATTTGTCAATGGAACAGCAGAAGTTCCAATACTATTACAGAAACGTGTCACGCCAGCAAGCCCAACAGCAAGCATGGCTTCAAAAGAGAAGGAGTGAGAACATGGCTCGGAAGGCTGCCGGAGAAGAACCGCTTCCTGAAGAGGATCCTTCAAACCCCATTTTCAAGCCACTCCCTGAGCCTTCACGGTTGGACAGCTTTCTGATAACAAATCAAATCTCAAACTACTGCAACCAAATTAATGGGGTTGCCGGACAGAGCTTCAGCAGATTATATTTGACGAAGGCTTTGCAAGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF1977 DnaJ

Protein Analysis

348

Amino Acids

39.98

Weight (kDa)

4.86

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	24 - 109	2e-15	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
eIF3h_C	PF19445	154 - 347	1.1e-58	C-terminal region of eIF3h

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49060 AT5G49060
fragaria_vesca	FvH4_4g18330 FvH4_4g18330 FvH4_4g18330
malus_domestica	MD13G1167300.v1.1 MD16G1168100.v1.1
prunus_persica	Prupe.1G134600_v2.0.a1 Prupe.1G134600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422801
rosa_laevigata	RLG00000007604
rosa_multiflora	Rmu_co8497721.1_g000001 Rmu_sc0000830.1_g000048
rosa_roxburghii	Rroxscaffold_5G00364650
rosa_rugosa	Rorug04G0181500 Rorug04G0181600
rosa_samantha	Rh4AG241900 Rh4BG245300 Rh4CG255800 Rh4DG240500
rosa_wichuraiana	Rw4G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	315, 345
AccB1I	GGYRCC	3 cut(s)	245, 315, 345
AciI	CCGC	3 cut(s)	5, 520, 875
AclWI	GGATC	4 cut(s)	18, 440, 884, 897
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	722
AcuI	CTGAAG	4 cut(s)	17, 500, 903, 991
AfaI	GTAC	2 cut(s)	317, 347
AfiI	CCNNNNNNNGG	2 cut(s)	214, 568
AflIII	ACRYGT	1 cut(s)	789
AhlI	ACTAGT	1 cut(s)	695
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	7 cut(s)	239, 259, 493, 514, 647, 942, 1005
AluI	AGCT	7 cut(s)	239, 259, 493, 514, 647, 942, 1005
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	4 cut(s)	18, 440, 884, 897
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	41, 860
ApoI	RAATTY	1 cut(s)	722
ArsI	GACNNNNNNTTYG	2 cut(s)	1015, 1047
AseI	ATTAAT	1 cut(s)	984
Asp700I	GAANNNNTTC	1 cut(s)	876
Asp718I	GGTACC	2 cut(s)	315, 345
AsuHPI	GGTGA	2 cut(s)	136, 298
AvaI	CYCGRG	1 cut(s)	260
BaeI	ACNNNNGTAYC	4 cut(s)	329, 362, 642, 675
BamHI	GGATCC	1 cut(s)	889
BanI	GGYRCC	3 cut(s)	245, 315, 345
BanII	GRGCYC	1 cut(s)	516
BarI	GAAGNNNNNNTAC	2 cut(s)	758, 790
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	28, 847
BccI	CCATC	2 cut(s)	236, 306
BcgI	CGANNNNNNTGC	1 cut(s)	1015
BciT130I	CCWGG	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	386
BcuI	ACTAGT	1 cut(s)	695
BfaI	CTAG	2 cut(s)	696, 707
BfmI	CTRYAG	2 cut(s)	45, 324
BisI	GCNGC	3 cut(s)	6, 42, 861
BlsI	GCNGC	3 cut(s)	7, 43, 862
Bme1390I	CCNGG	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	4 cut(s)	247, 317, 347, 891
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	921
BsaBI	GATNNNNATC	1 cut(s)	675
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 568
Bse118I	RCCGGY	2 cut(s)	133, 146
Bse1I	ACTGG	2 cut(s)	96, 664
Bse8I	GATNNNNATC	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	410
BseGI	GGATG	4 cut(s)	172, 229, 317, 748
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	2 cut(s)	214, 568
BseMII	CTCAG	2 cut(s)	82, 912
BseNI	ACTGG	2 cut(s)	96, 664
BseRI	GAGGAG	3 cut(s)	51, 54, 233
BseXI	GCAGC	2 cut(s)	28, 847
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	1 cut(s)	150
BshNI	GGYRCC	3 cut(s)	245, 315, 345
BsiHKAI	GWGCWC	1 cut(s)	516
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	4 cut(s)	134, 147, 864, 996
BslI	CCNNNNNNNGG	2 cut(s)	214, 568
BsmAI	GTCTC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	5 cut(s)	23, 81, 445, 676, 889
BspACI	CCGC	3 cut(s)	5, 520, 875
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	2 cut(s)	81, 913
BspHI	TCATGA	1 cut(s)	399
BspLI	GGNNCC	4 cut(s)	247, 317, 347, 891
BspMAI	CTGCAG	1 cut(s)	328
BspPI	GGATC	4 cut(s)	18, 440, 884, 897
BspT107I	GGYRCC	3 cut(s)	245, 315, 345
BsrFI	RCCGGY	2 cut(s)	133, 146
BsrI	ACTGG	2 cut(s)	96, 664
BssAI	RCCGGY	2 cut(s)	133, 146
BssMI	GATC	5 cut(s)	23, 81, 445, 676, 889
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	4 cut(s)	307, 379, 426, 933
Bst6I	CTCTTC	3 cut(s)	45, 222, 879
BstC8I	GCNNGC	4 cut(s)	135, 800, 804, 816
BstDEI	CTNAG	3 cut(s)	68, 472, 921
BstEII	GGTNACC	1 cut(s)	142
BstF5I	GGATG	4 cut(s)	172, 229, 317, 748
BstKTI	GATC	5 cut(s)	26, 84, 448, 679, 892
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	5 cut(s)	23, 81, 445, 676, 889
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 482, 820, 857
BstNI	CCWGG	1 cut(s)	410
BstPI	GGTNACC	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	2 cut(s)	45, 324
BstV1I	GCAGC	2 cut(s)	28, 847
BstX2I	RGATCY	2 cut(s)	23, 889
BstXI	CCANNNNNNTGG	3 cut(s)	158, 361, 986
BstYI	RGATCY	2 cut(s)	23, 889
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	4 cut(s)	172, 229, 317, 748
BtsI	GCAGTG	2 cut(s)	115, 181
BtsIMutI	CAGTG	5 cut(s)	115, 181, 303, 476, 671
Cac8I	GCNNGC	4 cut(s)	135, 800, 804, 816
CciI	TCATGA	1 cut(s)	399
Cfr10I	RCCGGY	2 cut(s)	133, 146
Csp6I	GTAC	2 cut(s)	316, 346
CviAII	CATG	6 cut(s)	400, 508, 567, 739, 819, 847
CviQI	GTAC	2 cut(s)	316, 346
DdeI	CTNAG	3 cut(s)	68, 472, 921
DpnI	GATC	5 cut(s)	25, 83, 447, 678, 891
DpnII	GATC	5 cut(s)	23, 81, 445, 676, 889
DraI	TTTAAA	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	3 cut(s)	45, 222, 879
EarI	CTCTTC	3 cut(s)	45, 222, 879
Ecl136II	GAGCTC	1 cut(s)	514
Eco24I	GRGCYC	1 cut(s)	516
Eco32I	GATATC	1 cut(s)	577
Eco53kI	GAGCTC	1 cut(s)	514
Eco57I	CTGAAG	4 cut(s)	17, 500, 903, 991
Eco88I	CYCGRG	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	514
EcoO65I	GGTNACC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	408
EcoRV	GATATC	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	516
FaeI	CATG	6 cut(s)	403, 511, 570, 742, 822, 850
FalI	AAGNNNNNCTT	4 cut(s)	807, 839, 861, 893
FatI	CATG	6 cut(s)	399, 507, 566, 738, 818, 846
Fnu4HI	GCNGC	3 cut(s)	6, 42, 861
FokI	GGATG	4 cut(s)	179, 236, 324, 755
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	3 cut(s)	6, 42, 861
FspBI	CTAG	2 cut(s)	696, 707
GluI	GCNGC	3 cut(s)	6, 42, 861
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	4 cut(s)	134, 147, 864, 996
Hin1II	CATG	6 cut(s)	403, 511, 570, 742, 822, 850
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	2 cut(s)	468, 500
HpaII	CCGG	4 cut(s)	134, 147, 864, 996
HphI	GGTGA	2 cut(s)	136, 298
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	5 cut(s)	71, 81, 499, 855, 948
Hpy188III	TCNNGA	7 cut(s)	100, 182, 208, 262, 400, 707, 881
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	7 cut(s)	80, 475, 828, 850, 903, 936, 1021
HpyCH4III	ACNGT	4 cut(s)	307, 379, 426, 933
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	9 cut(s)	120, 326, 435, 614, 626, 685, 738, 975, 1036
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 482, 820, 857
HpyF3I	CTNAG	3 cut(s)	68, 472, 921
HpySE526I	ACGT	1 cut(s)	789
Hsp92II	CATG	6 cut(s)	403, 511, 570, 742, 822, 850
KpnI	GGTACC	2 cut(s)	319, 349
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	5 cut(s)	23, 81, 445, 676, 889
LmnI	GCTCC	2 cut(s)	64, 511
Lsp1109I	GCAGC	2 cut(s)	28, 847
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	2 cut(s)	696, 707
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	4 cut(s)	142, 187, 524, 792
MalI	GATC	5 cut(s)	25, 83, 447, 678, 891
MboI	GATC	5 cut(s)	23, 81, 445, 676, 889
MboII	GAAGA	6 cut(s)	23, 62, 115, 239, 881, 896
MflI	RGATCY	2 cut(s)	23, 889
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	6 cut(s)	193, 250, 529, 686, 722, 981
MlyI	GAGTC	1 cut(s)	477
MmeI	TCCRAC	3 cut(s)	289, 621, 915
MroNI	GCCGGC	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	876
MseI	TTAA	2 cut(s)	336, 984
MspI	CCGG	4 cut(s)	134, 147, 864, 996
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	4 cut(s)	245, 482, 820, 857
NaeI	GCCGGC	1 cut(s)	135
NdeII	GATC	5 cut(s)	23, 81, 445, 676, 889
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	6 cut(s)	403, 511, 570, 742, 822, 850
NlaIV	GGNNCC	4 cut(s)	247, 317, 347, 891
NmuCI	GTSAC	3 cut(s)	142, 187, 792
PaeR7I	CTCGAG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	399
PdiI	GCCGGC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	1 cut(s)	500
PkrI	GCNGC	3 cut(s)	7, 43, 862
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
PshBI	ATTAAT	1 cut(s)	984
Psp124BI	GAGCTC	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	408
PspEI	GGTNACC	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	4 cut(s)	247, 317, 347, 891
PstI	CTGCAG	1 cut(s)	328
PsuI	RGATCY	2 cut(s)	23, 889
RsaI	GTAC	2 cut(s)	317, 347
RsaNI	GTAC	2 cut(s)	316, 346
SacI	GAGCTC	1 cut(s)	516
SaqAI	TTAA	2 cut(s)	336, 984
SatI	GCNGC	3 cut(s)	6, 42, 861
Sau3AI	GATC	5 cut(s)	23, 81, 445, 676, 889
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	1 cut(s)	444
SfcI	CTRYAG	2 cut(s)	45, 324
Sfr274I	CTCGAG	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	695
Sse9I	AATT	6 cut(s)	193, 250, 529, 686, 722, 981
SsiI	CCGC	3 cut(s)	5, 520, 875
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	2 cut(s)	696, 707
SstI	GAGCTC	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	4 cut(s)	307, 379, 426, 933
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	2 cut(s)	84, 261
TasI	AATT	6 cut(s)	193, 250, 529, 686, 722, 981
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	2 cut(s)	336, 984
Tru9I	TTAA	2 cut(s)	336, 984
TscAI	CASTG	5 cut(s)	122, 181, 310, 483, 671
TseFI	GTSAC	3 cut(s)	142, 187, 792
TseI	GCWGC	2 cut(s)	41, 860
Tsp45I	GTSAC	3 cut(s)	142, 187, 792
TspDTI	ATGAA	6 cut(s)	240, 388, 416, 492, 496, 555
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	5 cut(s)	122, 181, 310, 483, 671
VspI	ATTAAT	1 cut(s)	984
XapI	RAATTY	1 cut(s)	722
XbaI	TCTAGA	1 cut(s)	706
XhoI	CTCGAG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	2 cut(s)	696, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.