RLG00000007604

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010192
Physical Location & Seq
Reverse (-)
18899669 .. 18900947
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007604

Sequence Viewer

Length: 990 bp
ATGGATGGTAACAAAGATGAAGCTTTGAGATGTGTTCGAATTGCGGAGGAGGCAATTGCAGCCGGTAACAAAGCCCGTGCTACCAAGTTTATCAGAATAGCCCAACGCCTTAATCAGAATTTGCAAGTTAATGAGCTCTTGGCTGCTTGCGAGAGGCTCGATTCGGGGTCTTCGGCGTCTTCCACTCAGGAAAAGGGTGTTGGTGAGACTAGGAAGGAGGTTGGGAAGGAGAAATTGGGGCAAGGGTTGAATGGGGAGAGGACTTATACCGAAGAGCATGTTCAGTTGATTAGGCAGGTGAAGAGGAATAAAGATTATTATGCTATTCTCGGTGTGGAGAAGACTTGCTCGGTTGAGGATATTAGGAAGGCTTATAGGAAACTGTCGTTGAAAGTTCATCCTGACAAGAACAAGGCTCCTGGTTCGGAGGAAGCGTTTAAGATTGTGAGCAAGGCTTTTAAGTGTTTGAGTGATGGGAATTCGAGGAGGCAGTATGATCAGACTGGATTGGTTGAGGAGTTTGAGTACAACCAGCAGCACGATGTGAGGAGGAGGCGGAGGAGGAGAACTGGAAATGACATGTTTGATGATGATTTTGACCCTGATGAGATATTCAGGGCATTCTTTGGTCAGTCAGACGTGTTTAGGACGGGTCAAGTTTACAGGACTAGAGGAACTGGTGGCCTTCATAGGGAGGAGGTTCAGCATGGGGGACTGAACATTATGCTTCTTATTCAAATATTACCTTTCTTGGTAATTTTATTGCTTGCATATCTGCCCTTCTCAGAGCCCGAATATGCTTTGCATAAGAATTTCAACTACCAGATTCCCAAGACAACTGAGAGACATGGAGTGGAGTTTTTTGTTAAATCACCAGTATTTGATGAGAGTTATCCTCTTGGAAGTTCCGCTCGAGCTAAAATTGAGGACAGCGTGATCAAGGATTACAAAAATGTGCTTCTTGAAGGCTATGTGGCTGAATTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DUF1977 DnaJ

Protein Analysis

330

Amino Acids

37.62

Weight (kDa)

8.49

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 105 - 166 5.5e-24 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 286
AccBSI CCGCTC 1 cut(s) 911
AciI CCGC 3 cut(s) 44, 556, 909
AcsI RAATTY 3 cut(s) 118, 478, 811
AcyI GRCGYC 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 544
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 1 cut(s) 691
AflIII ACRYGT 2 cut(s) 579, 639
AgsI TTSAA 5 cut(s) 250, 391, 737, 817, 965
AjiI CACGTC 1 cut(s) 640
AjnI CCWGG 1 cut(s) 418
AjuI GAANNNNNNNTTGG 4 cut(s) 183, 215, 218, 250
AluBI AGCT 3 cut(s) 23, 136, 917
AluI AGCT 3 cut(s) 23, 136, 917
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 2 cut(s) 200, 838
Ama87I CYCGRG 1 cut(s) 912
AoxI GGCC 1 cut(s) 682
ApeKI GCWGC 3 cut(s) 59, 143, 535
ApoI RAATTY 3 cut(s) 118, 478, 811
AsuHPI GGTGA 3 cut(s) 215, 310, 864
AsuII TTCGAA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 912
BanII GRGCYC 2 cut(s) 138, 792
BbsI GAAGAC 3 cut(s) 162, 171, 347
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 71, 130, 547
BccI CCATC 1 cut(s) 467
BciT130I CCWGG 1 cut(s) 420
BclI TGATCA 2 cut(s) 496, 936
BcoDI GTCTC 2 cut(s) 200, 838
BfaI CTAG 2 cut(s) 210, 669
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 3 cut(s) 60, 144, 536
BlsI GCNGC 3 cut(s) 61, 145, 537
Bme1390I CCNGG 1 cut(s) 420
BmeT110I CYCGRG 1 cut(s) 912
BmgBI CACGTC 1 cut(s) 640
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 420
BpiI GAAGAC 3 cut(s) 162, 171, 347
BplI GAGNNNNNCTC 2 cut(s) 880, 912
Bpu14I TTCGAA 1 cut(s) 37
BsaHI GRCGYC 1 cut(s) 176
BsaXI ACNNNNNCTCC 4 cut(s) 419, 449, 509, 539
Bsc4I CCNNNNNNNGG 1 cut(s) 691
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 4 cut(s) 508, 574, 682, 875
BseBI CCWGG 1 cut(s) 420
BseGI GGATG 2 cut(s) 10, 397
BseLI CCNNNNNNNGG 1 cut(s) 691
BseMII CTCAG 3 cut(s) 200, 798, 831
BseNI ACTGG 4 cut(s) 508, 574, 682, 875
BseRI GAGGAG 8 cut(s) 62, 499, 530, 562, 565, 574, 577, 710
BseXI GCAGC 3 cut(s) 71, 130, 547
BshFI GGCC 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 912
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 1 cut(s) 691
BsmAI GTCTC 2 cut(s) 200, 838
BsmFI GGGAC 1 cut(s) 726
BsmI GAATGC 1 cut(s) 620
BsnI GGCC 1 cut(s) 684
BsoBI CYCGRG 1 cut(s) 912
Bsp119I TTCGAA 1 cut(s) 37
Bsp1286I GDGCHC 2 cut(s) 138, 792
Bsp143I GATC 2 cut(s) 496, 936
BspACI CCGC 3 cut(s) 44, 556, 909
BspANI GGCC 1 cut(s) 684
BspCNI CTCAG 3 cut(s) 199, 797, 832
BspLI GGNNCC 1 cut(s) 417
BspMI ACCTGC 1 cut(s) 286
BspQI GCTCTTC 1 cut(s) 267
BspT104I TTCGAA 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 911
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 4 cut(s) 508, 574, 682, 875
BssAI RCCGGY 1 cut(s) 62
BssMI GATC 2 cut(s) 496, 936
BssNI GRCGYC 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 384
Bst6I CTCTTC 2 cut(s) 267, 296
BstACI GRCGYC 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 148, 768
BstDEI CTNAG 3 cut(s) 186, 784, 840
BstF5I GGATG 2 cut(s) 10, 397
BstKTI GATC 2 cut(s) 499, 939
BstMAI GTCTC 2 cut(s) 200, 838
BstMBI GATC 2 cut(s) 496, 936
BstMWI GCNNNNNNNGC 2 cut(s) 50, 59
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 2 cut(s) 281, 583
BstSCI CCNGG 1 cut(s) 418
BstV1I GCAGC 3 cut(s) 71, 130, 547
BstV2I GAAGAC 3 cut(s) 162, 171, 347
BsuRI GGCC 1 cut(s) 684
BtrI CACGTC 1 cut(s) 640
BtsCI GGATG 2 cut(s) 10, 397
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 148, 768
Cfr10I RCCGGY 1 cut(s) 62
CseI GACGC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 526
CviAII CATG 4 cut(s) 278, 580, 707, 848
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 3 cut(s) 186, 784, 840
DpnI GATC 2 cut(s) 498, 938
DpnII GATC 2 cut(s) 496, 936
DraIII CACNNNGTG 1 cut(s) 544
Eam1104I CTCTTC 2 cut(s) 267, 296
EarI CTCTTC 2 cut(s) 267, 296
EciI GGCGGA 1 cut(s) 571
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 2 cut(s) 138, 792
Eco53kI GAGCTC 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 912
EcoICRI GAGCTC 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 418
EcoT38I GRGCYC 2 cut(s) 138, 792
FaeI CATG 4 cut(s) 281, 583, 710, 851
FaqI GGGAC 1 cut(s) 726
FatI CATG 4 cut(s) 277, 579, 706, 847
FbaI TGATCA 2 cut(s) 496, 936
Fnu4HI GCNGC 3 cut(s) 60, 144, 536
FokI GGATG 2 cut(s) 17, 384
FriOI GRGCYC 2 cut(s) 138, 792
Fsp4HI GCNGC 3 cut(s) 60, 144, 536
FspBI CTAG 2 cut(s) 210, 669
GluI GCNGC 3 cut(s) 60, 144, 536
HaeIII GGCC 1 cut(s) 684
HapII CCGG 1 cut(s) 63
HgaI GACGC 1 cut(s) 165
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 4 cut(s) 281, 583, 710, 851
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 2 cut(s) 161, 826
HpaII CCGG 1 cut(s) 63
HphI GGTGA 3 cut(s) 215, 310, 864
Hpy166II GTNNAC 1 cut(s) 661
Hpy188I TCNGA 6 cut(s) 95, 117, 427, 501, 637, 787
Hpy188III TCNNGA 3 cut(s) 188, 401, 962
Hpy8I GTNNAC 1 cut(s) 661
HpyAV CCTTC 6 cut(s) 208, 220, 361, 695, 790, 959
HpyCH4III ACNGT 1 cut(s) 384
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 4 cut(s) 59, 124, 770, 805
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 59
HpyF3I CTNAG 3 cut(s) 186, 784, 840
HpySE526I ACGT 1 cut(s) 639
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 4 cut(s) 281, 583, 710, 851
Ksp22I TGATCA 2 cut(s) 496, 936
Kzo9I GATC 2 cut(s) 496, 936
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 3 cut(s) 71, 130, 547
MaeI CTAG 2 cut(s) 210, 669
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 2 cut(s) 8, 65
MalI GATC 2 cut(s) 498, 938
MbiI CCGCTC 1 cut(s) 911
MboI GATC 2 cut(s) 496, 936
MboII GAAGA 5 cut(s) 162, 171, 284, 313, 352
MfeI CAATTG 1 cut(s) 54
MhlI GDGCHC 2 cut(s) 138, 792
MluCI AATT 9 cut(s) 39, 54, 118, 233, 478, 756, 811, 921, 980
MseI TTAA 5 cut(s) 111, 129, 438, 459, 867
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 420
MunI CAATTG 1 cut(s) 54
Mva1269I GAATGC 1 cut(s) 620
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 2 cut(s) 50, 59
NdeII GATC 2 cut(s) 496, 936
NlaIII CATG 4 cut(s) 281, 583, 710, 851
NlaIV GGNNCC 1 cut(s) 417
NspI RCATGY 2 cut(s) 281, 583
NspV TTCGAA 1 cut(s) 37
PaeR7I CTCGAG 1 cut(s) 912
PaqCI CACCTGC 1 cut(s) 286
PciI ACATGT 1 cut(s) 579
PciSI GCTCTTC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 431
PctI GAATGC 1 cut(s) 620
PfeI GAWTC 2 cut(s) 161, 826
PkrI GCNGC 3 cut(s) 61, 145, 537
PscI ACATGT 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 417
PspXI VCTCGAGB 1 cut(s) 912
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
SacI GAGCTC 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 5 cut(s) 111, 129, 438, 459, 867
SatI GCNGC 3 cut(s) 60, 144, 536
Sau3AI GATC 2 cut(s) 496, 936
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 2 cut(s) 138, 792
SetI ASST 8 cut(s) 25, 138, 222, 300, 642, 702, 748, 919
Sfr274I CTCGAG 1 cut(s) 912
SfuI TTCGAA 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 912
SmlI CTYRAG 1 cut(s) 912
SmoI CTYRAG 1 cut(s) 912
Sse9I AATT 9 cut(s) 39, 54, 118, 233, 478, 756, 811, 921, 980
SsiI CCGC 3 cut(s) 44, 556, 909
SspI AATATT 1 cut(s) 741
SspMI CTAG 2 cut(s) 210, 669
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 384
TaiI ACGT 1 cut(s) 642
TaqI TCGA 4 cut(s) 37, 159, 482, 913
TasI AATT 9 cut(s) 39, 54, 118, 233, 478, 756, 811, 921, 980
TatI WGTACW 1 cut(s) 525
TfiI GAWTC 2 cut(s) 161, 826
Tru1I TTAA 5 cut(s) 111, 129, 438, 459, 867
Tru9I TTAA 5 cut(s) 111, 129, 438, 459, 867
TseI GCWGC 3 cut(s) 59, 143, 535
TspDTI ATGAA 3 cut(s) 33, 386, 677
XapI RAATTY 3 cut(s) 118, 478, 811
XceI RCATGY 2 cut(s) 281, 583
XhoI CTCGAG 1 cut(s) 912
XspI CTAG 2 cut(s) 210, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.