Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010192

Physical Location & Seq

Genomic Coordinates Forward (+)

22265002 .. 22267165

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18330.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGATGGTAATAAAGATGAAGCTTTGAGATGTGTGCGCATTGCGGAGGAAGCAATCGCCGCCGGTAACAAAGCGCGTGCTGCCAAATTCATCAAAATTGCGCGGCGGCTTAACCAGGATTTGCAAGTTAATGAGCTTCTGGCGGCTTGCGATAAGCTCGATTCGGCGTCTTCTAGTCAAGAAAAGGGCGTTGGGGAGAGTAGGAGTGAGCTTGGGAAGGAGAAATCGGGGGGAGGGTTGAATGGGGAGCGGAGTTATACCGAGGAGCATGTTCAGTTGATTAGGCAGGTGAAGAGGAATAAGGATTATTACGCGATTCTCGGCGTGGAGAAGACTTGCTCGGTTGAGGAGATTAGGAAGGCGTATAGGAAGCTGTCATTGAAAGTTCATCCGGATAAGAACAAGGCTCCTGGCTCGGAGGAGGCGTTTAAGATTGTGAGCAAGGCGTTCAAGTGTTTGAGTGATGTGAATTCAAGGAGGCAGTATGATCAGACTGGTTTAGTTGAGGAGTTTGAGTACAATCAGCAGCATAATGTGAGGAGGAGGCCGAGGAGGAGAACTGGGAATGACTTGTTTGATGATGATTTTGACCCCGATGAGATATTCAGGGCGTTCTTTGGTCAGTCGGACATGTTTAGGACGAGTCAGGTTTACAGGACTAGAGGAGCTGGTGCACATCATAGGGAGGAGGTTCACAATGGGGGACCTAACATTATGCTTCTTATTCAATTATTACCATTTTTGGTGATTTTGTTGCTTGCGTATCTGCCCTTTACCGAGCCAGACTACGCTTTGCATAAGAATTACAACTACCAGATTCCCAAGACAACTGAGAGACATGGAGTAGAGTTTTTCGTTAAATCACCAAACTTTGATGAGAGTTATCCTCTTGGAAGTTCTGCTCGAGCTAAAATTGAGGATAGTGTGATCAAGGATTACAAAAATGTGCTTGTACACTACTGTCGTGTTGAGCTTCAGAGGCGTCACTGGAATAAGAAAATGTCTACTCCTCACTGTGATAAGTTAAACGCCCTTGAAGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF1977 DnaJ

Protein Analysis

349

Amino Acids

39.94

Weight (kDa)

8.93

Isoelectric Point (pI)

60.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	102 - 163	2.4e-24	DnaJ domain
DUF1977	PF09320	259 - 329	1.8e-07	Domain of unknown function (DUF1977)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49060 AT5G49060
fragaria_vesca	FvH4_4g18330 FvH4_4g18330 FvH4_4g18330
malus_domestica	MD13G1167300.v1.1 MD16G1168100.v1.1
prunus_persica	Prupe.1G134600_v2.0.a1 Prupe.1G134600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422801
rosa_laevigata	RLG00000007604
rosa_multiflora	Rmu_co8497721.1_g000001 Rmu_sc0000830.1_g000048
rosa_roxburghii	Rroxscaffold_5G00364650
rosa_rugosa	Rorug04G0181500 Rorug04G0181600
rosa_samantha	Rh4AG241900 Rh4BG245300 Rh4CG255800 Rh4DG240500
rosa_wichuraiana	Rw4G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	277
Acc16I	TGCGCA	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	277
AccBSI	CCGCTC	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	1004
AccII	CGCG	3 cut(s)	76, 103, 314
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	6 cut(s)	44, 60, 103, 106, 143, 250
AcsI	RAATTY	2 cut(s)	86, 469
AcuI	CTGAAG	1 cut(s)	959
AcyI	GRCGYC	2 cut(s)	167, 982
AfaI	GTAC	2 cut(s)	518, 954
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	6 cut(s)	241, 382, 451, 474, 728, 1037
AjnI	CCWGG	2 cut(s)	114, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	9 cut(s)	23, 136, 157, 211, 373, 668, 908, 973, 1043
AluI	AGCT	9 cut(s)	23, 136, 157, 211, 373, 668, 908, 973, 1043
Alw21I	GWGCWC	1 cut(s)	676
Alw26I	GTCTC	1 cut(s)	829
Alw44I	GTGCAC	1 cut(s)	672
Ama87I	CYCGRG	1 cut(s)	903
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	1 cut(s)	545
ApaLI	GTGCAC	1 cut(s)	672
ApeKI	GCWGC	2 cut(s)	80, 526
ApoI	RAATTY	2 cut(s)	86, 469
AspLEI	GCGC	3 cut(s)	39, 76, 103
AspS9I	GGNCC	1 cut(s)	704
AsuHPI	GGTGA	3 cut(s)	301, 757, 855
AvaI	CYCGRG	1 cut(s)	903
AvaII	GGWCC	1 cut(s)	704
BaeGI	GKGCMC	1 cut(s)	676
BbsI	GAAGAC	2 cut(s)	162, 338
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	2 cut(s)	67, 538
BciT130I	CCWGG	2 cut(s)	116, 411
BclI	TGATCA	2 cut(s)	487, 927
BcoDI	GTCTC	1 cut(s)	829
BfaI	CTAG	2 cut(s)	174, 660
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	6 cut(s)	60, 81, 104, 107, 144, 527
BlsI	GCNGC	6 cut(s)	61, 82, 105, 108, 145, 528
Bme1390I	CCNGG	2 cut(s)	116, 411
Bme18I	GGWCC	1 cut(s)	704
BmeT110I	CYCGRG	1 cut(s)	903
BmgT120I	GGNCC	1 cut(s)	704
BmiI	GGNNCC	2 cut(s)	408, 705
BmrFI	CCNGG	2 cut(s)	116, 411
BmrI	ACTGGG	1 cut(s)	570
BmuI	ACTGGG	1 cut(s)	570
BpiI	GAAGAC	2 cut(s)	162, 338
BplI	GAGNNNNNCTC	2 cut(s)	871, 903
BsaHI	GRCGYC	2 cut(s)	167, 982
BsaJI	CCNNGG	2 cut(s)	261, 548
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	4 cut(s)	410, 440, 500, 530
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	3 cut(s)	499, 565, 992
Bse3DI	GCAATG	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	2 cut(s)	116, 411
BseDI	CCNNGG	2 cut(s)	261, 548
BseGI	GGATG	2 cut(s)	10, 388
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	3 cut(s)	499, 565, 992
BseSI	GKGCMC	1 cut(s)	676
BseXI	GCAGC	2 cut(s)	67, 538
Bsh1236I	CGCG	3 cut(s)	76, 103, 314
BshFI	GGCC	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	676
BsiHKCI	CYCGRG	1 cut(s)	903
BsiSI	CCGG	2 cut(s)	63, 392
BslFI	GGGAC	1 cut(s)	717
BsmAI	GTCTC	1 cut(s)	829
BsmFI	GGGAC	1 cut(s)	717
BsnI	GGCC	1 cut(s)	547
BsoBI	CYCGRG	1 cut(s)	903
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp13I	TCCGGA	1 cut(s)	391
Bsp1407I	TGTACA	1 cut(s)	952
Bsp143I	GATC	2 cut(s)	487, 927
BspACI	CCGC	6 cut(s)	44, 60, 103, 106, 143, 250
BspANI	GGCC	1 cut(s)	547
BspCNI	CTCAG	1 cut(s)	823
BspEI	TCCGGA	1 cut(s)	391
BspFNI	CGCG	3 cut(s)	76, 103, 314
BspLI	GGNNCC	2 cut(s)	408, 705
BspMI	ACCTGC	1 cut(s)	277
BsrBI	CCGCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	952
BsrI	ACTGG	3 cut(s)	499, 565, 992
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	261, 548
BssMI	GATC	2 cut(s)	487, 927
BssNI	GRCGYC	2 cut(s)	167, 982
Bst2UI	CCWGG	2 cut(s)	116, 411
Bst4CI	ACNGT	2 cut(s)	962, 1016
Bst6I	CTCTTC	1 cut(s)	287
BstACI	GRCGYC	2 cut(s)	167, 982
BstAUI	TGTACA	1 cut(s)	952
BstC8I	GCNNGC	3 cut(s)	78, 148, 759
BstDEI	CTNAG	1 cut(s)	831
BstF5I	GGATG	2 cut(s)	10, 388
BstFNI	CGCG	3 cut(s)	76, 103, 314
BstHHI	GCGC	3 cut(s)	39, 76, 103
BstKTI	GATC	2 cut(s)	490, 930
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	2 cut(s)	487, 927
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 59, 80, 979
BstNI	CCWGG	2 cut(s)	116, 411
BstNSI	RCATGY	2 cut(s)	272, 634
BstSCI	CCNGG	2 cut(s)	114, 409
BstSLI	GKGCMC	1 cut(s)	676
BstUI	CGCG	3 cut(s)	76, 103, 314
BstV1I	GCAGC	2 cut(s)	67, 538
BstV2I	GAAGAC	2 cut(s)	162, 338
BsuRI	GGCC	1 cut(s)	547
BtsCI	GGATG	2 cut(s)	10, 388
BtsIMutI	CAGTG	2 cut(s)	985, 1012
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	3 cut(s)	78, 148, 759
CfoI	GCGC	3 cut(s)	39, 76, 103
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	704
CseI	GACGC	2 cut(s)	156, 971
Csp6I	GTAC	2 cut(s)	517, 953
CviAII	CATG	3 cut(s)	269, 631, 839
CviQI	GTAC	2 cut(s)	517, 953
DdeI	CTNAG	1 cut(s)	831
DpnI	GATC	2 cut(s)	489, 929
DpnII	GATC	2 cut(s)	487, 927
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	704
Eco57I	CTGAAG	1 cut(s)	959
Eco88I	CYCGRG	1 cut(s)	903
EcoO109I	RGGNCCY	1 cut(s)	704
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	114, 409
FaeI	CATG	3 cut(s)	272, 634, 842
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	3 cut(s)	268, 630, 838
FbaI	TGATCA	2 cut(s)	487, 927
FblI	GTMKAC	1 cut(s)	1004
Fnu4HI	GCNGC	6 cut(s)	60, 81, 104, 107, 144, 527
FokI	GGATG	2 cut(s)	17, 375
Fsp4HI	GCNGC	6 cut(s)	60, 81, 104, 107, 144, 527
FspAI	RTGCGCAY	1 cut(s)	38
FspBI	CTAG	2 cut(s)	174, 660
FspI	TGCGCA	1 cut(s)	38
GlaI	GCGC	3 cut(s)	38, 75, 102
GluI	GCNGC	6 cut(s)	60, 81, 104, 107, 144, 527
HaeIII	GGCC	1 cut(s)	547
HapII	CCGG	2 cut(s)	63, 392
HgaI	GACGC	2 cut(s)	156, 971
HhaI	GCGC	3 cut(s)	39, 76, 103
Hin1I	GRCGYC	2 cut(s)	167, 982
Hin1II	CATG	3 cut(s)	272, 634, 842
Hin6I	GCGC	3 cut(s)	37, 74, 101
HinP1I	GCGC	3 cut(s)	37, 74, 101
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	4 cut(s)	161, 316, 643, 817
HpaII	CCGG	2 cut(s)	63, 392
HphI	GGTGA	3 cut(s)	301, 757, 855
Hpy166II	GTNNAC	5 cut(s)	652, 674, 694, 955, 1005
Hpy188I	TCNGA	4 cut(s)	418, 492, 628, 978
Hpy188III	TCNNGA	2 cut(s)	179, 392
Hpy8I	GTNNAC	5 cut(s)	652, 674, 694, 955, 1005
HpyAV	CCTTC	2 cut(s)	211, 352
HpyCH4III	ACNGT	2 cut(s)	962, 1016
HpyCH4V	TGCA	3 cut(s)	124, 674, 796
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 59, 80, 979
HpyF3I	CTNAG	1 cut(s)	831
Hsp92I	GRCGYC	2 cut(s)	167, 982
Hsp92II	CATG	3 cut(s)	272, 634, 842
HspAI	GCGC	3 cut(s)	37, 74, 101
Kpn2I	TCCGGA	1 cut(s)	391
Ksp22I	TGATCA	2 cut(s)	487, 927
Kzo9I	GATC	2 cut(s)	487, 927
LmnI	GCTCC	4 cut(s)	247, 265, 412, 665
Lsp1109I	GCAGC	2 cut(s)	67, 538
MaeI	CTAG	2 cut(s)	174, 660
MaeIII	GTNAC	2 cut(s)	65, 983
MalI	GATC	2 cut(s)	489, 929
MbiI	CCGCTC	1 cut(s)	250
MboI	GATC	2 cut(s)	487, 927
MboII	GAAGA	3 cut(s)	162, 304, 343
MhlI	GDGCHC	1 cut(s)	676
MluCI	AATT	6 cut(s)	86, 96, 469, 728, 802, 912
MlyI	GAGTC	1 cut(s)	652
MmeI	TCCRAC	1 cut(s)	606
MroI	TCCGGA	1 cut(s)	391
MseI	TTAA	5 cut(s)	111, 129, 429, 858, 1025
MspI	CCGG	2 cut(s)	63, 392
MspR9I	CCNGG	2 cut(s)	116, 411
MvaI	CCWGG	2 cut(s)	116, 411
MvnI	CGCG	3 cut(s)	76, 103, 314
MwoI	GCNNNNNNNGC	4 cut(s)	50, 59, 80, 979
NdeII	GATC	2 cut(s)	487, 927
NlaIII	CATG	3 cut(s)	272, 634, 842
NlaIV	GGNNCC	2 cut(s)	408, 705
NmeAIII	GCCGAG	2 cut(s)	300, 573
NmuCI	GTSAC	1 cut(s)	983
NsbI	TGCGCA	1 cut(s)	38
NspI	RCATGY	2 cut(s)	272, 634
PaeR7I	CTCGAG	1 cut(s)	903
PaqCI	CACCTGC	1 cut(s)	277
PciI	ACATGT	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PfeI	GAWTC	3 cut(s)	161, 316, 817
PkrI	GCNGC	6 cut(s)	61, 82, 105, 108, 145, 528
PleI	GAGTC	1 cut(s)	651
PpsI	GAGTC	1 cut(s)	651
PpuMI	RGGWCCY	1 cut(s)	704
PscI	ACATGT	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	704
Psp6I	CCWGG	2 cut(s)	114, 409
PspGI	CCWGG	2 cut(s)	114, 409
PspN4I	GGNNCC	2 cut(s)	408, 705
PspPI	GGNCC	1 cut(s)	704
PspPPI	RGGWCCY	1 cut(s)	704
PspXI	VCTCGAGB	1 cut(s)	903
RsaI	GTAC	2 cut(s)	518, 954
RsaNI	GTAC	2 cut(s)	517, 953
SaqAI	TTAA	5 cut(s)	111, 129, 429, 858, 1025
SatI	GCNGC	6 cut(s)	60, 81, 104, 107, 144, 527
Sau3AI	GATC	2 cut(s)	487, 927
Sau96I	GGNCC	1 cut(s)	704
SchI	GAGTC	1 cut(s)	652
ScrFI	CCNGG	2 cut(s)	116, 411
SduI	GDGCHC	1 cut(s)	676
Sfr274I	CTCGAG	1 cut(s)	903
SinI	GGWCC	1 cut(s)	704
SlaI	CTCGAG	1 cut(s)	903
SmlI	CTYRAG	1 cut(s)	903
SmoI	CTYRAG	1 cut(s)	903
Sse9I	AATT	6 cut(s)	86, 96, 469, 728, 802, 912
SsiI	CCGC	6 cut(s)	44, 60, 103, 106, 143, 250
SspMI	CTAG	2 cut(s)	174, 660
StyD4I	CCNGG	2 cut(s)	114, 409
TaaI	ACNGT	2 cut(s)	962, 1016
TaqI	TCGA	2 cut(s)	159, 904
TasI	AATT	6 cut(s)	86, 96, 469, 728, 802, 912
TatI	WGTACW	2 cut(s)	516, 952
TauI	GCSGC	4 cut(s)	62, 106, 109, 146
TfiI	GAWTC	3 cut(s)	161, 316, 817
Tru1I	TTAA	5 cut(s)	111, 129, 429, 858, 1025
Tru9I	TTAA	5 cut(s)	111, 129, 429, 858, 1025
TscAI	CASTG	2 cut(s)	992, 1019
TseFI	GTSAC	1 cut(s)	983
TseI	GCWGC	2 cut(s)	80, 526
Tsp45I	GTSAC	1 cut(s)	983
TspDTI	ATGAA	3 cut(s)	33, 79, 377
TspRI	CASTG	2 cut(s)	992, 1019
VneI	GTGCAC	1 cut(s)	672
VpaK11BI	GGWCC	1 cut(s)	704
XapI	RAATTY	2 cut(s)	86, 469
XceI	RCATGY	2 cut(s)	272, 634
XhoI	CTCGAG	1 cut(s)	903
XmiI	GTMKAC	1 cut(s)	1004
XspI	CTAG	2 cut(s)	174, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.