Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010192

Physical Location & Seq

Genomic Coordinates Forward (+)

54862210 .. 54863265

Gene Structure 1056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG241900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGATGGTAACAAAGATGAAGCTTTGAGATGTGTTCGAATTGCGGAGGAGGCAATTGCAGCCGGTAACAAAGCGCGTGCTACCAAGTTTATCAAAATAGCCCAACGCCTTAATCAGAATTTGCAAGTTAATGAGCTCTTGGCTGCCTGCGAGAGGCTCGATTCGGGGTCTTCGGCATCTTCCACTCAGGAAGAGGGTGTTGGTGAGACTAGCAAGGAGGTTGGGAAGGAGAAATTGGGGCAGGGGTTGAATGGGGAGAGGATTTATACCGAAGAGCATGTTCAGTTGATTAGGCAGGTGAAGAGGAATAAAGATTATTATGCTATTCTCGGCGTGGAGAAGACTTGCTCTGTTGAGGAGATTAGGAAGGCTTATAGGAAATTGTCGTTGAAAGTTCATCCTGACAAGAACAAGGCTCCTGGTTCGGAAGAGGCGTTTAAGATTGTGAGCAAGGCTTTTAAGTGTTTGAGTGATGTGAATTCGAGGAGGCAGTATGATCAGACTGGATTGGTTGAGGAGTTTGAGTACAACCAGCAGCACGATGTGAGGAGGAGGCGGAGGAGGAGAACTGGGAATGACATGTTTGATGATGATTTTGACCCCGATGAGATATTCAGGGCATTCTTTGGTCAGTCAGACATGTTTAGGACAGGTCAAGTTTACAGGACTAGAGGAACTGGTGGCCTTCATAGGGAGGAGGTTCAGCATGGGGGACCGAACATTATGCTTCTTATTCAAATATTACCTTTCTTGGTAATTTTATTGCTTGCATATCTGCCCTTCACAGAGCCCGAATATGCTTTGCATAAGAATTTCAACTACCAGATTCCCAAGACAACTGAGAGACATGGAGTGGAGTTTTTTGTTAAATCACCAAGATTTGATGAGAGTTATCCTCTTGGAAGTTCCGCTCGAGCTAAAATTGAGGACAGCGTGATCAAGGATTACAAAAATGTGCTTATACACTACTGTCGTGTTGAGCTTCAGAGGCGTCACTGGAATAAGAAAATGTCTACTCCTCACTGCGATAAGTTAAACGCCCTTGAAGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF1977 DnaJ

Protein Analysis

351

Amino Acids

40.44

Weight (kDa)

8.84

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	105 - 166	2.4e-24	DnaJ domain
DUF1977	PF09320	262 - 332	4e-07	Domain of unknown function (DUF1977)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49060 AT5G49060
fragaria_vesca	FvH4_4g18330 FvH4_4g18330 FvH4_4g18330
malus_domestica	MD13G1167300.v1.1 MD16G1168100.v1.1
prunus_persica	Prupe.1G134600_v2.0.a1 Prupe.1G134600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422801
rosa_laevigata	RLG00000007604
rosa_multiflora	Rmu_co8497721.1_g000001 Rmu_sc0000830.1_g000048
rosa_roxburghii	Rroxscaffold_5G00364650
rosa_rugosa	Rorug04G0181500 Rorug04G0181600
rosa_samantha	Rh4AG241900 Rh4BG245300 Rh4CG255800 Rh4DG240500
rosa_wichuraiana	Rw4G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	286
AccBSI	CCGCTC	1 cut(s)	911
AccI	GTMKAC	1 cut(s)	1013
AccII	CGCG	1 cut(s)	76
AciI	CCGC	3 cut(s)	44, 556, 909
AcsI	RAATTY	3 cut(s)	118, 478, 811
AcuI	CTGAAG	1 cut(s)	968
AcyI	GRCGYC	1 cut(s)	991
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	2 cut(s)	153, 691
AflIII	ACRYGT	2 cut(s)	579, 639
AgsI	TTSAA	5 cut(s)	250, 391, 737, 817, 1046
AjnI	CCWGG	1 cut(s)	418
AjuI	GAANNNNNNNTTGG	4 cut(s)	183, 215, 218, 250
AluBI	AGCT	5 cut(s)	23, 136, 917, 982, 1052
AluI	AGCT	5 cut(s)	23, 136, 917, 982, 1052
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	2 cut(s)	200, 838
Ama87I	CYCGRG	1 cut(s)	912
AoxI	GGCC	1 cut(s)	682
ApeKI	GCWGC	3 cut(s)	59, 143, 535
ApoI	RAATTY	3 cut(s)	118, 478, 811
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	713
AsuHPI	GGTGA	3 cut(s)	215, 310, 864
AsuII	TTCGAA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	912
AvaII	GGWCC	1 cut(s)	713
BanII	GRGCYC	2 cut(s)	138, 792
BbsI	GAAGAC	2 cut(s)	162, 347
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	71, 130, 547
BcgI	CGANNNNNNTGC	2 cut(s)	706, 740
BciT130I	CCWGG	1 cut(s)	420
BclI	TGATCA	2 cut(s)	496, 936
BcoDI	GTCTC	2 cut(s)	200, 838
BfaI	CTAG	2 cut(s)	210, 669
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	3 cut(s)	60, 144, 536
BlsI	GCNGC	3 cut(s)	61, 145, 537
Bme1390I	CCNGG	1 cut(s)	420
Bme18I	GGWCC	1 cut(s)	713
BmeT110I	CYCGRG	1 cut(s)	912
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	2 cut(s)	417, 714
BmrFI	CCNGG	1 cut(s)	420
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	1 cut(s)	185
BmuI	ACTGGG	1 cut(s)	579
BpiI	GAAGAC	2 cut(s)	162, 347
BplI	GAGNNNNNCTC	2 cut(s)	880, 912
Bpu14I	TTCGAA	1 cut(s)	37
BsaHI	GRCGYC	1 cut(s)	991
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 691
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	4 cut(s)	508, 574, 682, 1001
BseBI	CCWGG	1 cut(s)	420
BseGI	GGATG	2 cut(s)	10, 397
BseLI	CCNNNNNNNGG	2 cut(s)	153, 691
BseMII	CTCAG	2 cut(s)	200, 831
BseNI	ACTGG	4 cut(s)	508, 574, 682, 1001
BseXI	GCAGC	3 cut(s)	71, 130, 547
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	684
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	912
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	2 cut(s)	153, 691
BsmAI	GTCTC	2 cut(s)	200, 838
BsmFI	GGGAC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	620
BsnI	GGCC	1 cut(s)	684
BsoBI	CYCGRG	1 cut(s)	912
Bsp119I	TTCGAA	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	138, 792
Bsp143I	GATC	2 cut(s)	496, 936
BspACI	CCGC	3 cut(s)	44, 556, 909
BspANI	GGCC	1 cut(s)	684
BspCNI	CTCAG	2 cut(s)	199, 832
BspFNI	CGCG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	417, 714
BspMI	ACCTGC	1 cut(s)	286
BspQI	GCTCTTC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	911
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	4 cut(s)	508, 574, 682, 1001
BssAI	RCCGGY	1 cut(s)	62
BssMI	GATC	2 cut(s)	496, 936
BssNI	GRCGYC	1 cut(s)	991
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	971
Bst6I	CTCTTC	4 cut(s)	186, 267, 296, 423
BstACI	GRCGYC	1 cut(s)	991
BstBI	TTCGAA	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	78, 148, 768
BstDEI	CTNAG	2 cut(s)	186, 840
BstENI	CCTNNNNNAGG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	10, 397
BstFNI	CGCG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	2 cut(s)	499, 939
BstMAI	GTCTC	2 cut(s)	200, 838
BstMBI	GATC	2 cut(s)	496, 936
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 59, 988
BstNI	CCWGG	1 cut(s)	420
BstNSI	RCATGY	3 cut(s)	281, 583, 643
BstSCI	CCNGG	1 cut(s)	418
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	3 cut(s)	71, 130, 547
BstV2I	GAAGAC	2 cut(s)	162, 347
BsuRI	GGCC	1 cut(s)	684
BtsCI	GGATG	2 cut(s)	10, 397
BtsI	GCAGTG	1 cut(s)	1021
BtsIMutI	CAGTG	2 cut(s)	994, 1021
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	3 cut(s)	78, 148, 768
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	713
CseI	GACGC	1 cut(s)	980
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	5 cut(s)	278, 580, 640, 707, 848
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	2 cut(s)	186, 840
DpnI	GATC	2 cut(s)	498, 938
DpnII	GATC	2 cut(s)	496, 936
DraIII	CACNNNGTG	1 cut(s)	544
Eam1104I	CTCTTC	4 cut(s)	186, 267, 296, 423
EarI	CTCTTC	4 cut(s)	186, 267, 296, 423
EciI	GGCGGA	1 cut(s)	571
Ecl136II	GAGCTC	1 cut(s)	136
Eco24I	GRGCYC	2 cut(s)	138, 792
Eco47I	GGWCC	1 cut(s)	713
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	968
Eco88I	CYCGRG	1 cut(s)	912
EcoICRI	GAGCTC	1 cut(s)	136
EcoNI	CCTNNNNNAGG	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	418
EcoT38I	GRGCYC	2 cut(s)	138, 792
FaeI	CATG	5 cut(s)	281, 583, 643, 710, 851
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	5 cut(s)	277, 579, 639, 706, 847
FbaI	TGATCA	2 cut(s)	496, 936
FblI	GTMKAC	1 cut(s)	1013
Fnu4HI	GCNGC	3 cut(s)	60, 144, 536
FokI	GGATG	2 cut(s)	17, 384
FriOI	GRGCYC	2 cut(s)	138, 792
Fsp4HI	GCNGC	3 cut(s)	60, 144, 536
FspBI	CTAG	2 cut(s)	210, 669
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	3 cut(s)	60, 144, 536
HaeIII	GGCC	1 cut(s)	684
HapII	CCGG	1 cut(s)	63
HgaI	GACGC	1 cut(s)	980
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	991
Hin1II	CATG	5 cut(s)	281, 583, 643, 710, 851
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	2 cut(s)	161, 826
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	3 cut(s)	215, 310, 864
Hpy166II	GTNNAC	2 cut(s)	661, 1014
Hpy188I	TCNGA	5 cut(s)	117, 427, 501, 637, 987
Hpy188III	TCNNGA	2 cut(s)	188, 401
Hpy8I	GTNNAC	2 cut(s)	661, 1014
HpyAV	CCTTC	4 cut(s)	220, 361, 695, 790
HpyCH4III	ACNGT	1 cut(s)	971
HpyCH4V	TGCA	4 cut(s)	59, 124, 770, 805
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 59, 988
HpyF3I	CTNAG	2 cut(s)	186, 840
Hsp92I	GRCGYC	1 cut(s)	991
Hsp92II	CATG	5 cut(s)	281, 583, 643, 710, 851
HspAI	GCGC	1 cut(s)	74
Ksp22I	TGATCA	2 cut(s)	496, 936
Kzo9I	GATC	2 cut(s)	496, 936
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	3 cut(s)	71, 130, 547
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	2 cut(s)	210, 669
MaeIII	GTNAC	3 cut(s)	8, 65, 992
MalI	GATC	2 cut(s)	498, 938
MbiI	CCGCTC	1 cut(s)	911
MboI	GATC	2 cut(s)	496, 936
MboII	GAAGA	7 cut(s)	162, 171, 203, 284, 313, 352, 440
MfeI	CAATTG	1 cut(s)	54
MhlI	GDGCHC	2 cut(s)	138, 792
MluCI	AATT	9 cut(s)	39, 54, 118, 233, 380, 478, 756, 811, 921
MseI	TTAA	6 cut(s)	111, 129, 438, 459, 867, 1034
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	420
MunI	CAATTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	50, 59, 988
NdeII	GATC	2 cut(s)	496, 936
NlaIII	CATG	5 cut(s)	281, 583, 643, 710, 851
NlaIV	GGNNCC	2 cut(s)	417, 714
NmeAIII	GCCGAG	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	992
NspI	RCATGY	3 cut(s)	281, 583, 643
NspV	TTCGAA	1 cut(s)	37
PaeR7I	CTCGAG	1 cut(s)	912
PaqCI	CACCTGC	1 cut(s)	286
PciI	ACATGT	2 cut(s)	579, 639
PciSI	GCTCTTC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	431
PctI	GAATGC	1 cut(s)	620
PfeI	GAWTC	2 cut(s)	161, 826
PkrI	GCNGC	3 cut(s)	61, 145, 537
PscI	ACATGT	2 cut(s)	579, 639
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	2 cut(s)	417, 714
PspPI	GGNCC	1 cut(s)	713
PspXI	VCTCGAGB	1 cut(s)	912
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SacI	GAGCTC	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	6 cut(s)	111, 129, 438, 459, 867, 1034
SatI	GCNGC	3 cut(s)	60, 144, 536
Sau3AI	GATC	2 cut(s)	496, 936
Sau96I	GGNCC	1 cut(s)	713
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	2 cut(s)	138, 792
SfaNI	GCATC	1 cut(s)	185
Sfr274I	CTCGAG	1 cut(s)	912
SfuI	TTCGAA	1 cut(s)	37
SinI	GGWCC	1 cut(s)	713
SlaI	CTCGAG	1 cut(s)	912
SmlI	CTYRAG	1 cut(s)	912
SmoI	CTYRAG	1 cut(s)	912
Sse9I	AATT	9 cut(s)	39, 54, 118, 233, 380, 478, 756, 811, 921
SsiI	CCGC	3 cut(s)	44, 556, 909
SspI	AATATT	1 cut(s)	741
SspMI	CTAG	2 cut(s)	210, 669
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	971
TaqI	TCGA	4 cut(s)	37, 159, 482, 913
TaqII	GACCGA	1 cut(s)	730
TasI	AATT	9 cut(s)	39, 54, 118, 233, 380, 478, 756, 811, 921
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	2 cut(s)	161, 826
Tru1I	TTAA	6 cut(s)	111, 129, 438, 459, 867, 1034
Tru9I	TTAA	6 cut(s)	111, 129, 438, 459, 867, 1034
TscAI	CASTG	2 cut(s)	1001, 1028
TseFI	GTSAC	1 cut(s)	992
TseI	GCWGC	3 cut(s)	59, 143, 535
Tsp45I	GTSAC	1 cut(s)	992
TspDTI	ATGAA	3 cut(s)	33, 386, 677
TspRI	CASTG	2 cut(s)	1001, 1028
VpaK11BI	GGWCC	1 cut(s)	713
XagI	CCTNNNNNAGG	1 cut(s)	151
XapI	RAATTY	3 cut(s)	118, 478, 811
XceI	RCATGY	3 cut(s)	281, 583, 643
XhoI	CTCGAG	1 cut(s)	912
XmiI	GTMKAC	1 cut(s)	1013
XspI	CTAG	2 cut(s)	210, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.