Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010192

Physical Location & Seq

Genomic Coordinates Forward (+)

13989791 .. 13992836

Gene Structure 3046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1168100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAAGGTAATAAGGATGAAGCTTTAAGGTGTGTTCGGATCGCCGAAGAAGCAATTGCTTCCGGCAACAAAGGGCGTGCCTTGAAATTTATTAAGATTGCACAACGGCTTAATCATAATTTGCAAGTTGATGAACTTTTGGCTGCGTGTGAGGCAATTAATTCGGGGTCTTCCGCGTCTTCTGTTGATGAGAAGGGTGCTGGTGAGATTAGGAATGAGCCGGGCGTGGAGAAATTGGGCTGCGGTTTGAATGGGGAGGTTAGTTATACCGAAGAGCATGTTCAGTTGGTTAGGAAGATTAAGAGAAACAAAGACTATTACGGAATTCTTGGCGTGGAGAAGACTTGCTCGGTCGAGGACATTAGGAAGGCTTATAGGAAGTTGTCATTGAAGGTTCATCCTGATAAGAACAAGGCTCCCGGTTCAGAAGAAGCGTTTAAGATAGTAAGCAAGGCTTTCAAGTGTTTGAGTGATGGGGACTCTAGGAGGCAGTATGATCAGACTGGATTAGTTGATGAATTTGAGTACAACCAGCAGCACAATAATACGAGGAGAAGGAGGAGGAGAGGTGGGAATGACTTTTTTGACGATGATTTTGACCCCGATGACATATTCAGGGCGTTCTTTGGTCAATCAGACATGTTTCGGTCAAGTCATGTTTATAGGACTAGTAGAACAGCTGGTCATCAGAGGGAGGAGTCTCAGGGAGGGGGACCTAACATCATGCTTCTTCTTCAAATAATACCTTTTTTGGTAATTTTGTTGTTGGCATATCTGCCCTTTTCAGAGCCCGTCTACTCTTTGCAGAAGAATTATAACTACCAGATTCCCAAGACGACAGAGAAATATGGAGTGGAATTTTTTGTTAAATCGCAAGCATTTGATGAGAGTTATCCCATTGGAAGTGCTGGTCGAGTTAACGTTGAGAGCAGTGTTATCAAGGATTACAAAAATGTGCTTGCACACTACTGTCGGGTTGAGCTTCAAAGGCGCCACTGGAGTAAGAATCTGCCTACTCCTCACTGCGACAAACTAAATAAGCTTGGAAGGCTATATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF1977 DnaJ

Protein Analysis

354

Amino Acids

40.18

Weight (kDa)

8.77

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	105 - 166	9.3e-24	DnaJ domain
DUF1977	PF09320	262 - 332	1.3e-07	Domain of unknown function (DUF1977)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49060 AT5G49060
fragaria_vesca	FvH4_4g18330 FvH4_4g18330 FvH4_4g18330
malus_domestica	MD13G1167300.v1.1 MD16G1168100.v1.1
prunus_persica	Prupe.1G134600_v2.0.a1 Prupe.1G134600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422801
rosa_laevigata	RLG00000007604
rosa_multiflora	Rmu_co8497721.1_g000001 Rmu_sc0000830.1_g000048
rosa_roxburghii	Rroxscaffold_5G00364650
rosa_rugosa	Rorug04G0181500 Rorug04G0181600
rosa_samantha	Rh4AG241900 Rh4BG245300 Rh4CG255800 Rh4DG240500
rosa_wichuraiana	Rw4G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	816
AccB1I	GGYRCC	1 cut(s)	990
AccI	GTMKAC	1 cut(s)	795
AccII	CGCG	1 cut(s)	176
AciI	CCGC	2 cut(s)	174, 243
AclI	AACGTT	1 cut(s)	921
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	4 cut(s)	86, 324, 518, 857
AcyI	GRCGYC	1 cut(s)	991
AfaI	GTAC	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	6 cut(s)	85, 250, 391, 460, 737, 986
AhlI	ACTAGT	1 cut(s)	668
AluBI	AGCT	4 cut(s)	23, 680, 982, 1042
AluI	AGCT	4 cut(s)	23, 680, 982, 1042
Alw26I	GTCTC	1 cut(s)	705
AlwI	GGATC	1 cut(s)	47
ApeKI	GCWGC	3 cut(s)	143, 240, 535
ApoI	RAATTY	4 cut(s)	86, 324, 518, 857
ArsI	GACNNNNNNTTYG	2 cut(s)	578, 610
AseI	ATTAAT	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	993
AspS9I	GGNCC	1 cut(s)	713
AsuC2I	CCSGG	2 cut(s)	222, 420
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	713
BanI	GGYRCC	1 cut(s)	990
BanII	GRGCYC	1 cut(s)	792
BbsI	GAAGAC	3 cut(s)	162, 171, 347
BbvI	GCAGC	3 cut(s)	130, 227, 547
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	2 cut(s)	222, 420
BcoDI	GTCTC	1 cut(s)	705
BcuI	ACTAGT	1 cut(s)	668
BfaI	CTAG	2 cut(s)	483, 669
BfoI	RGCGCY	1 cut(s)	994
BisI	GCNGC	3 cut(s)	144, 241, 536
BlsI	GCNGC	3 cut(s)	145, 242, 537
Bme1390I	CCNGG	2 cut(s)	222, 420
Bme18I	GGWCC	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	3 cut(s)	417, 714, 992
BmrFI	CCNGG	2 cut(s)	222, 420
BpiI	GAAGAC	3 cut(s)	162, 171, 347
BpmI	CTGGAG	1 cut(s)	1018
BpuMI	CCSGG	2 cut(s)	222, 420
BsaHI	GRCGYC	1 cut(s)	991
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bse1I	ACTGG	2 cut(s)	508, 1001
BseGI	GGATG	2 cut(s)	22, 397
BseMII	CTCAG	1 cut(s)	716
BseNI	ACTGG	2 cut(s)	508, 1001
BseRI	GAGGAG	5 cut(s)	565, 574, 577, 710, 1008
BseXI	GCAGC	3 cut(s)	130, 227, 547
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	990
BsiEI	CGRYCG	1 cut(s)	354
BsiSI	CCGG	3 cut(s)	63, 221, 420
BslFI	GGGAC	2 cut(s)	491, 726
BsmAI	GTCTC	1 cut(s)	705
BsmFI	GGGAC	2 cut(s)	491, 726
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp143I	GATC	2 cut(s)	39, 496
BspACI	CCGC	2 cut(s)	174, 243
BspCNI	CTCAG	1 cut(s)	715
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	3 cut(s)	417, 714, 992
BspPI	GGATC	1 cut(s)	47
BspQI	GCTCTTC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	990
BsrI	ACTGG	2 cut(s)	508, 1001
BssMI	GATC	2 cut(s)	39, 496
BssNI	GRCGYC	1 cut(s)	991
Bst4CI	ACNGT	1 cut(s)	971
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	991
BstC8I	GCNNGC	3 cut(s)	78, 876, 960
BstDEI	CTNAG	1 cut(s)	702
BstF5I	GGATG	2 cut(s)	22, 397
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	994
BstHHI	GCGC	1 cut(s)	993
BstKTI	GATC	2 cut(s)	42, 499
BstMAI	GTCTC	1 cut(s)	705
BstMBI	GATC	2 cut(s)	39, 496
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 152, 988, 1048
BstNSI	RCATGY	2 cut(s)	281, 643
BstSCI	CCNGG	2 cut(s)	220, 418
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	3 cut(s)	130, 227, 547
BstV2I	GAAGAC	3 cut(s)	162, 171, 347
BtsCI	GGATG	2 cut(s)	22, 397
BtsI	GCAGTG	2 cut(s)	937, 1021
BtsIMutI	CAGTG	3 cut(s)	937, 994, 1021
Cac8I	GCNNGC	3 cut(s)	78, 876, 960
CfoI	GCGC	1 cut(s)	993
Cfr13I	GGNCC	1 cut(s)	713
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	4 cut(s)	278, 640, 656, 724
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	1 cut(s)	702
DinI	GGCGCC	1 cut(s)	992
DpnI	GATC	2 cut(s)	41, 498
DpnII	GATC	2 cut(s)	39, 496
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	792
Eco47I	GGWCC	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	713
EcoRI	GAATTC	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	792
EgeI	GGCGCC	1 cut(s)	992
EheI	GGCGCC	1 cut(s)	992
FaeI	CATG	4 cut(s)	281, 643, 659, 727
FalI	AAGNNNNNCTT	2 cut(s)	439, 471
FaqI	GGGAC	2 cut(s)	491, 726
FatI	CATG	4 cut(s)	277, 639, 655, 723
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	3 cut(s)	144, 241, 536
FokI	GGATG	2 cut(s)	29, 384
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	3 cut(s)	144, 241, 536
FspBI	CTAG	2 cut(s)	483, 669
GlaI	GCGC	1 cut(s)	992
GluI	GCNGC	3 cut(s)	144, 241, 536
GsuI	CTGGAG	1 cut(s)	1018
HaeII	RGCGCY	1 cut(s)	994
HapII	CCGG	3 cut(s)	63, 221, 420
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	993
Hin1I	GRCGYC	1 cut(s)	991
Hin1II	CATG	4 cut(s)	281, 643, 659, 727
Hin6I	GCGC	1 cut(s)	991
HinP1I	GCGC	1 cut(s)	991
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HindIII	AAGCTT	2 cut(s)	21, 1040
HinfI	GANTC	4 cut(s)	479, 698, 826, 1006
HpaI	GTTAAC	1 cut(s)	919
HpaII	CCGG	3 cut(s)	63, 221, 420
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	796, 919
Hpy188I	TCNGA	6 cut(s)	39, 427, 501, 637, 690, 787
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	2 cut(s)	796, 919
HpyAV	CCTTC	5 cut(s)	187, 361, 385, 549, 1041
HpyCH4III	ACNGT	1 cut(s)	971
HpyCH4IV	ACGT	1 cut(s)	921
HpyCH4V	TGCA	4 cut(s)	101, 124, 805, 962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 152, 988, 1048
HpyF3I	CTNAG	1 cut(s)	702
HpySE526I	ACGT	1 cut(s)	921
Hsp92I	GRCGYC	1 cut(s)	991
Hsp92II	CATG	4 cut(s)	281, 643, 659, 727
HspAI	GCGC	1 cut(s)	991
KasI	GGCGCC	1 cut(s)	990
Ksp22I	TGATCA	1 cut(s)	496
KspAI	GTTAAC	1 cut(s)	919
Kzo9I	GATC	2 cut(s)	39, 496
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	3 cut(s)	130, 227, 547
MaeI	CTAG	2 cut(s)	483, 669
MaeII	ACGT	1 cut(s)	921
MalI	GATC	2 cut(s)	41, 498
MboI	GATC	2 cut(s)	39, 496
MfeI	CAATTG	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	792
Mly113I	GGCGCC	1 cut(s)	991
MlyI	GAGTC	2 cut(s)	473, 707
MseI	TTAA	8 cut(s)	26, 93, 111, 159, 300, 438, 867, 918
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	3 cut(s)	63, 221, 420
MspR9I	CCNGG	2 cut(s)	222, 420
MunI	CAATTG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	4 cut(s)	50, 152, 988, 1048
NarI	GGCGCC	1 cut(s)	991
NciI	CCSGG	2 cut(s)	222, 420
NdeII	GATC	2 cut(s)	39, 496
NlaIII	CATG	4 cut(s)	281, 643, 659, 727
NlaIV	GGNNCC	3 cut(s)	417, 714, 992
NspI	RCATGY	2 cut(s)	281, 643
PciI	ACATGT	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	826, 1006
PkrI	GCNGC	3 cut(s)	145, 242, 537
PleI	GAGTC	2 cut(s)	473, 706
PluTI	GGCGCC	1 cut(s)	994
PpsI	GAGTC	2 cut(s)	473, 706
PpuMI	RGGWCCY	1 cut(s)	713
PscI	ACATGT	1 cut(s)	639
PshBI	ATTAAT	1 cut(s)	159
PsiI	TTATAA	1 cut(s)	816
Psp1406I	AACGTT	1 cut(s)	921
Psp5II	RGGWCCY	1 cut(s)	713
PspN4I	GGNNCC	3 cut(s)	417, 714, 992
PspPI	GGNCC	1 cut(s)	713
PspPPI	RGGWCCY	1 cut(s)	713
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	8 cut(s)	26, 93, 111, 159, 300, 438, 867, 918
SatI	GCNGC	3 cut(s)	144, 241, 536
Sau3AI	GATC	2 cut(s)	39, 496
Sau96I	GGNCC	1 cut(s)	713
SchI	GAGTC	2 cut(s)	473, 707
ScrFI	CCNGG	2 cut(s)	222, 420
SduI	GDGCHC	1 cut(s)	792
SfoI	GGCGCC	1 cut(s)	992
SinI	GGWCC	1 cut(s)	713
SpeI	ACTAGT	1 cut(s)	668
SsiI	CCGC	2 cut(s)	174, 243
SspDI	GGCGCC	1 cut(s)	990
SspMI	CTAG	2 cut(s)	483, 669
StyD4I	CCNGG	2 cut(s)	220, 418
TaaI	ACNGT	1 cut(s)	971
TaiI	ACGT	1 cut(s)	924
TaqI	TCGA	2 cut(s)	354, 913
TaqII	GACCGA	2 cut(s)	340, 636
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	2 cut(s)	826, 1006
Tru1I	TTAA	8 cut(s)	26, 93, 111, 159, 300, 438, 867, 918
Tru9I	TTAA	8 cut(s)	26, 93, 111, 159, 300, 438, 867, 918
TscAI	CASTG	3 cut(s)	937, 1001, 1028
TseI	GCWGC	3 cut(s)	143, 240, 535
TspDTI	ATGAA	4 cut(s)	33, 147, 386, 531
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	3 cut(s)	937, 1001, 1028
VpaK11BI	GGWCC	1 cut(s)	713
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	4 cut(s)	86, 324, 518, 857
XceI	RCATGY	2 cut(s)	281, 643
XmiI	GTMKAC	1 cut(s)	795
XspI	CTAG	2 cut(s)	483, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.