Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0010192

Physical Location & Seq

Genomic Coordinates Forward (+)

44928525 .. 44929994

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G020820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGTGGATGAGCAAAAATGCAAAACTAGACTCTGGGTTGGGTCCTCGGGGTCGTCGACGCGCCAGTCTCAGCTGTGGGTTCGGTGCGCTCTGCAATTAAACCATCTCTCTCTCTCTCTCACTCGCTCGCTGGCTCTCACTGATTTCGAGGTGTTGATCTATGATCAGGAGGCAATTGCAGCCGGTAACAAAGCGCGTGCTACCAAGTTTATCAAAATAGCCCAACGCCTTAATCAGAATTTGCAGGTTAATGAGCTCTTGGCTGCCTGCGAGAGGCTCGATTCGGGGTCTTCGGCATCTTCCACACAGGAAAAGGGTGTTGGTGAGACTAGTAAGGAGGTTGGGAAGGAGAAATTGGGGCAAGGGTTGAATGGGGAGAGGATTTATACCGAAGAGCATGTTCAGTTGATTAGGCAGGTCAAGAGGAATAAAGATTATTATGCTATTCTCGGCCTGGAGAAGACTTGCTCGGTTGAGGAGATTAGGAAGGCTTATAGGAAATTGTCGTTGAAAGTTCATCCCGACAAGAACAAGGCTCCTGGTTCGGAAGAGGCGTTTAAGATTGTGAGCAAGGCTTTTAAGTGTTTGAGTGATGTGAATTCGAGGAGGCAGTATGATCAGACTGGATTGGTTGAGGAGTTTGAGTACAACCAGCAGCACGATGTGAGGAGGAGGCGGAGGAGGAGAACTGGGAATGACATGTTTGATGATGATTTTGACCCCGATGAGATATTCAGGGCATTCTTTGGTCAGTCAGACATGTTTAGGACAGGTCAAGTTTACAGGACTAGAGGAACTGGTGGCCTTCATAGGGAGGAGGTTCAGCATGGGGGACCGAACATTATGCTTCTTATTCAAATATTACCTTTCTTGGTAATTTTATTGCTTGCATATCTGCCCTTCACAGAGCCCGAATATGCTTTGCATAAGAATTTCAACTACCAGATTCCCAAGACAACTGAGAGACATGGAGTGGAGTTTTTTGTTAAATCACCAAGATTTGATGAGAGTTATCCTCTTGGAAGTTCCGCTCGAGCTAAAATTGAGGACAGCGTGATCAAGGATTACAAAAATGTGCTTGCACACTACTGTCGTGTTGAGCTTCAGAGGCGTCACTGGAATAAGAAAATGTCTACTCCTCACTGCGATAAGTTAAACGCCCTTGAAGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF1977 DnaJ

Protein Analysis

391

Amino Acids

45.0

Weight (kDa)

9.12

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	145 - 206	8.5e-24	DnaJ domain
DUF1977	PF09320	302 - 372	2.4e-07	Domain of unknown function (DUF1977)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49060 AT5G49060
fragaria_vesca	FvH4_4g18330 FvH4_4g18330 FvH4_4g18330
malus_domestica	MD13G1167300.v1.1 MD16G1168100.v1.1
prunus_persica	Prupe.1G134600_v2.0.a1 Prupe.1G134600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422801
rosa_laevigata	RLG00000007604
rosa_multiflora	Rmu_co8497721.1_g000001 Rmu_sc0000830.1_g000048
rosa_roxburghii	Rroxscaffold_5G00364650
rosa_rugosa	Rorug04G0181500 Rorug04G0181600
rosa_samantha	Rh4AG241900 Rh4BG245300 Rh4CG255800 Rh4DG240500
rosa_wichuraiana	Rw4G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	64
Acc36I	ACCTGC	2 cut(s)	235, 406
AccBSI	CCGCTC	1 cut(s)	1031
AccI	GTMKAC	2 cut(s)	56, 1133
AccII	CGCG	2 cut(s)	61, 196
AciI	CCGC	2 cut(s)	676, 1029
AcsI	RAATTY	3 cut(s)	238, 598, 931
AcuI	CTGAAG	1 cut(s)	1088
AcyI	GRCGYC	1 cut(s)	1111
AdeI	CACNNNGTG	1 cut(s)	664
AfaI	GTAC	1 cut(s)	647
AfiI	CCNNNNNNNGG	2 cut(s)	273, 811
AflIII	ACRYGT	2 cut(s)	699, 759
AgsI	TTSAA	5 cut(s)	370, 511, 857, 937, 1166
AhlI	ACTAGT	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	453, 538
AjuI	GAANNNNNNNTTGG	4 cut(s)	303, 335, 338, 370
AluBI	AGCT	5 cut(s)	73, 256, 1037, 1102, 1172
AluI	AGCT	5 cut(s)	73, 256, 1037, 1102, 1172
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	3 cut(s)	72, 320, 958
Ama87I	CYCGRG	2 cut(s)	46, 1032
AoxI	GGCC	2 cut(s)	451, 802
ApeKI	GCWGC	3 cut(s)	179, 263, 655
ApoI	RAATTY	3 cut(s)	238, 598, 931
AspLEI	GCGC	3 cut(s)	63, 89, 196
AspS9I	GGNCC	2 cut(s)	42, 833
AsuHPI	GGTGA	2 cut(s)	335, 984
AvaI	CYCGRG	2 cut(s)	46, 1032
AvaII	GGWCC	2 cut(s)	42, 833
BanII	GRGCYC	2 cut(s)	258, 912
BbsI	GAAGAC	2 cut(s)	282, 467
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	191, 250, 667
BccI	CCATC	1 cut(s)	111
BcgI	CGANNNNNNTGC	2 cut(s)	826, 860
BciT130I	CCWGG	2 cut(s)	455, 540
BclI	TGATCA	3 cut(s)	163, 616, 1056
BcoDI	GTCTC	3 cut(s)	72, 320, 958
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	3 cut(s)	27, 330, 789
BfuAI	ACCTGC	2 cut(s)	235, 406
BisI	GCNGC	3 cut(s)	180, 264, 656
BlsI	GCNGC	3 cut(s)	181, 265, 657
Bme1390I	CCNGG	2 cut(s)	455, 540
Bme18I	GGWCC	2 cut(s)	42, 833
BmeT110I	CYCGRG	2 cut(s)	46, 1032
BmgT120I	GGNCC	2 cut(s)	42, 833
BmiI	GGNNCC	3 cut(s)	43, 537, 834
BmrFI	CCNGG	2 cut(s)	455, 540
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	1 cut(s)	305
BmuI	ACTGGG	1 cut(s)	699
BpiI	GAAGAC	2 cut(s)	282, 467
BplI	GAGNNNNNCTC	2 cut(s)	1000, 1032
BpmI	CTGGAG	1 cut(s)	476
BsaHI	GRCGYC	1 cut(s)	1111
BsaJI	CCNNGG	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	629, 659
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 811
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	5 cut(s)	64, 628, 694, 802, 1121
BseBI	CCWGG	2 cut(s)	455, 540
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	13, 517
BseLI	CCNNNNNNNGG	2 cut(s)	273, 811
BseMII	CTCAG	2 cut(s)	83, 951
BseNI	ACTGG	5 cut(s)	64, 628, 694, 802, 1121
BseRI	GAGGAG	9 cut(s)	491, 619, 650, 682, 685, 694, 697, 830, 1128
BseXI	GCAGC	3 cut(s)	191, 250, 667
Bsh1236I	CGCG	2 cut(s)	61, 196
BshFI	GGCC	2 cut(s)	453, 804
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	2 cut(s)	46, 1032
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	846
BslI	CCNNNNNNNGG	2 cut(s)	273, 811
BsmAI	GTCTC	3 cut(s)	72, 320, 958
BsmFI	GGGAC	1 cut(s)	846
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	2 cut(s)	453, 804
BsoBI	CYCGRG	2 cut(s)	46, 1032
Bsp1286I	GDGCHC	2 cut(s)	258, 912
Bsp143I	GATC	4 cut(s)	156, 163, 616, 1056
BspACI	CCGC	2 cut(s)	676, 1029
BspANI	GGCC	2 cut(s)	453, 804
BspCNI	CTCAG	2 cut(s)	82, 952
BspFNI	CGCG	2 cut(s)	61, 196
BspLI	GGNNCC	3 cut(s)	43, 537, 834
BspMI	ACCTGC	2 cut(s)	235, 406
BspQI	GCTCTTC	1 cut(s)	387
BsrBI	CCGCTC	1 cut(s)	1031
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	5 cut(s)	64, 628, 694, 802, 1121
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	4 cut(s)	156, 163, 616, 1056
BssNI	GRCGYC	1 cut(s)	1111
Bst2UI	CCWGG	2 cut(s)	455, 540
Bst4CI	ACNGT	1 cut(s)	1091
Bst6I	CTCTTC	2 cut(s)	387, 543
BstACI	GRCGYC	1 cut(s)	1111
BstC8I	GCNNGC	6 cut(s)	128, 132, 198, 268, 888, 1080
BstDEI	CTNAG	2 cut(s)	69, 960
BstENI	CCTNNNNNAGG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	13, 517
BstFNI	CGCG	2 cut(s)	61, 196
BstHHI	GCGC	3 cut(s)	63, 89, 196
BstKTI	GATC	4 cut(s)	159, 166, 619, 1059
BstMAI	GTCTC	3 cut(s)	72, 320, 958
BstMBI	GATC	4 cut(s)	156, 163, 616, 1056
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 1108
BstNI	CCWGG	2 cut(s)	455, 540
BstNSI	RCATGY	3 cut(s)	401, 703, 763
BstSCI	CCNGG	2 cut(s)	453, 538
BstUI	CGCG	2 cut(s)	61, 196
BstV1I	GCAGC	3 cut(s)	191, 250, 667
BstV2I	GAAGAC	2 cut(s)	282, 467
BsuRI	GGCC	2 cut(s)	453, 804
BtsCI	GGATG	2 cut(s)	13, 517
BtsI	GCAGTG	1 cut(s)	1141
BtsIMutI	CAGTG	3 cut(s)	138, 1114, 1141
BveI	ACCTGC	2 cut(s)	235, 406
Cac8I	GCNNGC	6 cut(s)	128, 132, 198, 268, 888, 1080
CfoI	GCGC	3 cut(s)	63, 89, 196
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	42, 833
CseI	GACGC	2 cut(s)	67, 1100
Csp6I	GTAC	1 cut(s)	646
CviAII	CATG	5 cut(s)	398, 700, 760, 827, 968
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	2 cut(s)	69, 960
DpnI	GATC	4 cut(s)	158, 165, 618, 1058
DpnII	GATC	4 cut(s)	156, 163, 616, 1056
DraIII	CACNNNGTG	1 cut(s)	664
DrdI	GACNNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	387, 543
EarI	CTCTTC	2 cut(s)	387, 543
EciI	GGCGGA	1 cut(s)	691
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	2 cut(s)	258, 912
Eco47I	GGWCC	2 cut(s)	42, 833
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	1088
Eco88I	CYCGRG	2 cut(s)	46, 1032
EcoICRI	GAGCTC	1 cut(s)	256
EcoNI	CCTNNNNNAGG	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRI	GAATTC	1 cut(s)	598
EcoRII	CCWGG	2 cut(s)	453, 538
EcoT38I	GRGCYC	2 cut(s)	258, 912
FaeI	CATG	5 cut(s)	401, 703, 763, 830, 971
FaqI	GGGAC	1 cut(s)	846
FatI	CATG	5 cut(s)	397, 699, 759, 826, 967
FbaI	TGATCA	3 cut(s)	163, 616, 1056
FblI	GTMKAC	2 cut(s)	56, 1133
Fnu4HI	GCNGC	3 cut(s)	180, 264, 656
FokI	GGATG	2 cut(s)	20, 504
FriOI	GRGCYC	2 cut(s)	258, 912
Fsp4HI	GCNGC	3 cut(s)	180, 264, 656
FspBI	CTAG	3 cut(s)	27, 330, 789
GlaI	GCGC	3 cut(s)	62, 88, 195
GluI	GCNGC	3 cut(s)	180, 264, 656
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	453, 804
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	2 cut(s)	67, 1100
HhaI	GCGC	3 cut(s)	63, 89, 196
Hin1I	GRCGYC	1 cut(s)	1111
Hin1II	CATG	5 cut(s)	401, 703, 763, 830, 971
Hin6I	GCGC	3 cut(s)	61, 87, 194
HinP1I	GCGC	3 cut(s)	61, 87, 194
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	3 cut(s)	30, 281, 946
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	2 cut(s)	335, 984
Hpy166II	GTNNAC	3 cut(s)	57, 781, 1134
Hpy188I	TCNGA	5 cut(s)	237, 547, 621, 757, 1107
Hpy188III	TCNNGA	3 cut(s)	167, 421, 521
Hpy8I	GTNNAC	3 cut(s)	57, 781, 1134
Hpy99I	CGWCG	2 cut(s)	58, 61
HpyAV	CCTTC	4 cut(s)	340, 481, 815, 910
HpyCH4III	ACNGT	1 cut(s)	1091
HpyCH4V	TGCA	7 cut(s)	21, 94, 179, 244, 890, 925, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 1108
HpyF3I	CTNAG	2 cut(s)	69, 960
Hsp92I	GRCGYC	1 cut(s)	1111
Hsp92II	CATG	5 cut(s)	401, 703, 763, 830, 971
HspAI	GCGC	3 cut(s)	61, 87, 194
Ksp22I	TGATCA	3 cut(s)	163, 616, 1056
Kzo9I	GATC	4 cut(s)	156, 163, 616, 1056
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	3 cut(s)	191, 250, 667
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	3 cut(s)	27, 330, 789
MaeIII	GTNAC	2 cut(s)	185, 1112
MalI	GATC	4 cut(s)	158, 165, 618, 1058
MbiI	CCGCTC	1 cut(s)	1031
MboI	GATC	4 cut(s)	156, 163, 616, 1056
MboII	GAAGA	5 cut(s)	282, 291, 404, 472, 560
MfeI	CAATTG	1 cut(s)	174
MhlI	GDGCHC	2 cut(s)	258, 912
MluCI	AATT	9 cut(s)	95, 174, 238, 353, 500, 598, 876, 931, 1041
MlyI	GAGTC	1 cut(s)	24
MseI	TTAA	7 cut(s)	98, 231, 249, 558, 579, 987, 1154
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	2 cut(s)	455, 540
MunI	CAATTG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	740
MvaI	CCWGG	2 cut(s)	455, 540
MvnI	CGCG	2 cut(s)	61, 196
MwoI	GCNNNNNNNGC	2 cut(s)	179, 1108
NdeII	GATC	4 cut(s)	156, 163, 616, 1056
NlaIII	CATG	5 cut(s)	401, 703, 763, 830, 971
NlaIV	GGNNCC	3 cut(s)	43, 537, 834
NmeAIII	GCCGAG	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	1112
NspI	RCATGY	3 cut(s)	401, 703, 763
PaeR7I	CTCGAG	1 cut(s)	1032
PciI	ACATGT	2 cut(s)	699, 759
PciSI	GCTCTTC	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 551
PctI	GAATGC	1 cut(s)	740
PfeI	GAWTC	2 cut(s)	281, 946
PkrI	GCNGC	3 cut(s)	181, 265, 657
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PpuMI	RGGWCCY	1 cut(s)	42
PscI	ACATGT	2 cut(s)	699, 759
Psp124BI	GAGCTC	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	453, 538
PspGI	CCWGG	2 cut(s)	453, 538
PspN4I	GGNNCC	3 cut(s)	43, 537, 834
PspPI	GGNCC	2 cut(s)	42, 833
PspPPI	RGGWCCY	1 cut(s)	42
PspXI	VCTCGAGB	1 cut(s)	1032
PvuII	CAGCTG	1 cut(s)	73
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
SacI	GAGCTC	1 cut(s)	258
SalI	GTCGAC	1 cut(s)	55
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	7 cut(s)	98, 231, 249, 558, 579, 987, 1154
SatI	GCNGC	3 cut(s)	180, 264, 656
Sau3AI	GATC	4 cut(s)	156, 163, 616, 1056
Sau96I	GGNCC	2 cut(s)	42, 833
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	2 cut(s)	455, 540
SduI	GDGCHC	2 cut(s)	258, 912
SfaNI	GCATC	1 cut(s)	305
Sfr274I	CTCGAG	1 cut(s)	1032
SgrDI	CGTCGACG	1 cut(s)	55
SinI	GGWCC	2 cut(s)	42, 833
SlaI	CTCGAG	1 cut(s)	1032
SmlI	CTYRAG	1 cut(s)	1032
SmoI	CTYRAG	1 cut(s)	1032
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	9 cut(s)	95, 174, 238, 353, 500, 598, 876, 931, 1041
SsiI	CCGC	2 cut(s)	676, 1029
SspI	AATATT	1 cut(s)	861
SspMI	CTAG	3 cut(s)	27, 330, 789
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	453, 538
TaaI	ACNGT	1 cut(s)	1091
TaqI	TCGA	5 cut(s)	56, 147, 279, 602, 1033
TaqII	GACCGA	1 cut(s)	850
TasI	AATT	9 cut(s)	95, 174, 238, 353, 500, 598, 876, 931, 1041
TatI	WGTACW	1 cut(s)	645
TfiI	GAWTC	2 cut(s)	281, 946
Tru1I	TTAA	7 cut(s)	98, 231, 249, 558, 579, 987, 1154
Tru9I	TTAA	7 cut(s)	98, 231, 249, 558, 579, 987, 1154
TscAI	CASTG	3 cut(s)	145, 1121, 1148
TseFI	GTSAC	1 cut(s)	1112
TseI	GCWGC	3 cut(s)	179, 263, 655
Tsp45I	GTSAC	1 cut(s)	1112
TspDTI	ATGAA	2 cut(s)	506, 797
TspRI	CASTG	3 cut(s)	145, 1121, 1148
VpaK11BI	GGWCC	2 cut(s)	42, 833
XagI	CCTNNNNNAGG	1 cut(s)	271
XapI	RAATTY	3 cut(s)	238, 598, 931
XceI	RCATGY	3 cut(s)	401, 703, 763
XhoI	CTCGAG	1 cut(s)	1032
XmiI	GTMKAC	2 cut(s)	56, 1133
XspI	CTAG	3 cut(s)	27, 330, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.