Rorug04G0181500

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010192
Physical Location & Seq
Reverse (-)
31780528 .. 31782208
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0181500.1

Sequence Viewer

Length: 348 bp
ATGCCCTCACTTGTACTTGACCGCGATCAGACCATAAAAAATGCCATCAAACAGGTTGAAGAAATGAGAAAAGATTTGTCTAATGCACTTCATGCTGCTGCATCTGTTGAGAGTAGAACTGCTGTAGCTGAGGTTGTTGAAATTGACGGTGGGAGTGGATCTGCTTCTTTGACAGATCTGTTGAAACATGACAAGGTTCTGAGCAAGAAGCCCCCTGCTCCTCACCGAGTTGTGCCTGATTATCTGTTGAATGCAACAACTAAAGAAGCCAACAAGAGAGTTAAGCTTGCCAACCTTGGTCGCCGTGGATTCAAGAAAAAATTCAAGGAAGATAAGGACCCCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DUF1977 DnaJ

Protein Analysis

115

Amino Acids

12.64

Weight (kDa)

9.65

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AciI CCGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 320
AfaI GTAC 1 cut(s) 15
AgsI TTSAA 6 cut(s) 59, 140, 184, 250, 313, 325
AluBI AGCT 2 cut(s) 128, 286
AluI AGCT 2 cut(s) 128, 286
AlwI GGATC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 95, 98
ApoI RAATTY 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 215
AvaII GGWCC 1 cut(s) 337
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 82, 85
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 123
BglII AGATCT 1 cut(s) 175
BisI GCNGC 2 cut(s) 96, 99
BlsI GCNGC 2 cut(s) 97, 100
Bme18I GGWCC 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 339
BmsI GCATC 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 295, 304
BseDI CCNNGG 2 cut(s) 295, 304
BseMII CTCAG 2 cut(s) 120, 191
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 2 cut(s) 82, 85
Bsh1236I CGCG 1 cut(s) 24
BsmI GAATGC 1 cut(s) 256
Bsp143I GATC 3 cut(s) 25, 158, 175
BspACI CCGC 1 cut(s) 22
BspCNI CTCAG 2 cut(s) 121, 192
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 295, 304
BssMI GATC 3 cut(s) 25, 158, 175
BssT1I CCWWGG 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 129, 200
BstDSI CCRYGG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 3 cut(s) 28, 161, 178
BstMBI GATC 3 cut(s) 25, 158, 175
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 123
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 82, 85
BstX2I RGATCY 2 cut(s) 158, 175
BstYI RGATCY 2 cut(s) 158, 175
BtgI CCRYGG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 14
CviAII CATG 2 cut(s) 92, 188
CviJI RGCY 4 cut(s) 128, 211, 269, 286
CviKI_1 RGCY 4 cut(s) 128, 211, 269, 286
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 2 cut(s) 129, 200
DpnI GATC 3 cut(s) 27, 160, 177
DpnII GATC 3 cut(s) 25, 158, 175
Eco130I CCWWGG 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 2 cut(s) 95, 191
FaiI YATR 3 cut(s) 35, 93, 189
FatI CATG 2 cut(s) 91, 187
Fnu4HI GCNGC 2 cut(s) 96, 99
Fsp4HI GCNGC 2 cut(s) 96, 99
GluI GCNGC 2 cut(s) 96, 99
Hin1II CATG 2 cut(s) 95, 191
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 1 cut(s) 309
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 2 cut(s) 30, 201
Hpy188III TCNNGA 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4V TGCA 3 cut(s) 86, 101, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 129, 200
Hsp92II CATG 2 cut(s) 95, 191
Kzo9I GATC 3 cut(s) 25, 158, 175
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 3 cut(s) 38, 228, 249
Lsp1109I GCAGC 2 cut(s) 82, 85
LweI GCATC 1 cut(s) 110
MalI GATC 3 cut(s) 27, 160, 177
MboI GATC 3 cut(s) 25, 158, 175
MboII GAAGA 2 cut(s) 71, 341
MflI RGATCY 2 cut(s) 158, 175
MluCI AATT 2 cut(s) 141, 320
MnlI CCTC 3 cut(s) 16, 124, 231
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 2 cut(s) 282, 346
Mva1269I GAATGC 1 cut(s) 256
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 3 cut(s) 25, 158, 175
NlaIII CATG 2 cut(s) 95, 191
NlaIV GGNNCC 1 cut(s) 339
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 309
PkrI GCNGC 2 cut(s) 97, 100
PpuMI RGGWCCY 1 cut(s) 337
Psp5II RGGWCCY 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 1 cut(s) 337
PspPPI RGGWCCY 1 cut(s) 337
PsuI RGATCY 2 cut(s) 158, 175
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 282, 346
SatI GCNGC 2 cut(s) 96, 99
Sau3AI GATC 3 cut(s) 25, 158, 175
Sau96I GGNCC 1 cut(s) 337
SetI ASST 6 cut(s) 57, 130, 135, 198, 288, 297
SfaNI GCATC 1 cut(s) 110
SfcI CTRYAG 1 cut(s) 123
SinI GGWCC 1 cut(s) 337
Sse9I AATT 2 cut(s) 141, 320
SsiI CCGC 1 cut(s) 22
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 1 cut(s) 149
TasI AATT 2 cut(s) 141, 320
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 2 cut(s) 282, 346
Tru9I TTAA 2 cut(s) 282, 346
TseI GCWGC 2 cut(s) 95, 98
TspDTI ATGAA 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 337
XapI RAATTY 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.