Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8497721.1

Orthogroup ID

OG0010192

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1032

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8497721.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ttgagatgtgttcgaattgcggaggaggcaattgcagccggtaacaaagcgcgtgctaccaagtttatcaaaatagcccaacgccttaatcagaatttgcaagttaatgagctcttggctgcctgcgagaggctcgattcggggtcttcggcatcttccacacaggaaaagggtgttggtgagactagtaaggaggttgggaaggagaaattggggcaggggttgaatggggagaggatttataccgaagagcatgttcagttgattaggcaggtgaagaggaataaagattattatgctattctcggcctggagaagacttgctcggttgaggagattaggaaggcttataggaaattgtcgttgaaagttcatcctgacaagaacaaggctcctggttcggaagaggcgtttaagattgtgagcaaggcttttaagtgtttgagtgatgtgaattcgaggaggcagtatgatcagactggattggttgaggagtttgagtacaaccagcagcacgatgtgaggaggaggcggaggaggagaactgggaatgacatgtttgatgatgattttgaccccgatgagatattcagggcattctttggtcagtcagacatgtttaggacaggtcaagtttacaggactagaggaactggaggccttcatagggaggaggttcagcatgggggaccgaacattatgcttcttattcaaatattacctttctttgtaattttattgcttgcatatctgcccttcacagagcccgaatacgctttgcataagaatttcaactaccagattcccaagacaactgagagacatggagtggagttttttgttaaatcaccaagatttgatgagagttatcctcttggaagttccgctcgagctaaaattgaggacagcgtgatcaaggattacaaaaatgtgcttgtacactactgtcgtgttgagcttcagaggcgtcactggaataagaaaatgtctactcctcactgcgataagttaaacgcccttgaagtagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF1977 DnaJ

Protein Analysis

343

Amino Acids

39.61

Weight (kDa)

9.19

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49060 AT5G49060
fragaria_vesca	FvH4_4g18330 FvH4_4g18330 FvH4_4g18330
malus_domestica	MD13G1167300.v1.1 MD16G1168100.v1.1
prunus_persica	Prupe.1G134600_v2.0.a1 Prupe.1G134600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422801
rosa_laevigata	RLG00000007604
rosa_multiflora	Rmu_co8497721.1_g000001 Rmu_sc0000830.1_g000048
rosa_roxburghii	Rroxscaffold_5G00364650
rosa_rugosa	Rorug04G0181500 Rorug04G0181600
rosa_samantha	Rh4AG241900 Rh4BG245300 Rh4CG255800 Rh4DG240500
rosa_wichuraiana	Rw4G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	262
AccBSI	CCGCTC	1 cut(s)	887
AccI	GTMKAC	1 cut(s)	989
AccII	CGCG	1 cut(s)	52
AciI	CCGC	3 cut(s)	20, 532, 885
AcsI	RAATTY	3 cut(s)	94, 454, 787
AcuI	CTGAAG	1 cut(s)	944
AcyI	GRCGYC	1 cut(s)	967
AdeI	CACNNNGTG	1 cut(s)	520
AfaI	GTAC	2 cut(s)	503, 939
AfiI	CCNNNNNNNGG	2 cut(s)	129, 667
AflIII	ACRYGT	2 cut(s)	555, 615
AgsI	TTSAA	5 cut(s)	226, 367, 713, 793, 1022
AhlI	ACTAGT	1 cut(s)	185
AjnI	CCWGG	2 cut(s)	309, 394
AjuI	GAANNNNNNNTTGG	4 cut(s)	159, 191, 194, 226
AluBI	AGCT	4 cut(s)	112, 893, 958, 1028
AluI	AGCT	4 cut(s)	112, 893, 958, 1028
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	2 cut(s)	176, 814
Ama87I	CYCGRG	1 cut(s)	888
AoxI	GGCC	2 cut(s)	307, 658
ApeKI	GCWGC	3 cut(s)	35, 119, 511
ApoI	RAATTY	3 cut(s)	94, 454, 787
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	3 cut(s)	191, 286, 840
AsuII	TTCGAA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	888
AvaII	GGWCC	1 cut(s)	689
BanII	GRGCYC	2 cut(s)	114, 768
BbsI	GAAGAC	2 cut(s)	138, 323
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	47, 106, 523
BcgI	CGANNNNNNTGC	2 cut(s)	682, 716
BciT130I	CCWGG	2 cut(s)	311, 396
BclI	TGATCA	2 cut(s)	472, 912
BcoDI	GTCTC	2 cut(s)	176, 814
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	2 cut(s)	186, 645
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	3 cut(s)	36, 120, 512
BlsI	GCNGC	3 cut(s)	37, 121, 513
Bme1390I	CCNGG	2 cut(s)	311, 396
Bme18I	GGWCC	1 cut(s)	689
BmeT110I	CYCGRG	1 cut(s)	888
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	2 cut(s)	393, 690
BmrFI	CCNGG	2 cut(s)	311, 396
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	1 cut(s)	161
BmuI	ACTGGG	1 cut(s)	555
BpiI	GAAGAC	2 cut(s)	138, 323
BplI	GAGNNNNNCTC	2 cut(s)	856, 888
BpmI	CTGGAG	2 cut(s)	332, 675
Bpu14I	TTCGAA	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	967
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 667
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	4 cut(s)	484, 550, 658, 977
BseBI	CCWGG	2 cut(s)	311, 396
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	2 cut(s)	129, 667
BseMII	CTCAG	1 cut(s)	807
BseNI	ACTGG	4 cut(s)	484, 550, 658, 977
BseXI	GCAGC	3 cut(s)	47, 106, 523
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	2 cut(s)	309, 660
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	888
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	702
BslI	CCNNNNNNNGG	2 cut(s)	129, 667
BsmAI	GTCTC	2 cut(s)	176, 814
BsmFI	GGGAC	1 cut(s)	702
BsmI	GAATGC	1 cut(s)	596
BsnI	GGCC	2 cut(s)	309, 660
BsoBI	CYCGRG	1 cut(s)	888
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	114, 768
Bsp1407I	TGTACA	1 cut(s)	937
Bsp143I	GATC	2 cut(s)	472, 912
BspACI	CCGC	3 cut(s)	20, 532, 885
BspANI	GGCC	2 cut(s)	309, 660
BspCNI	CTCAG	1 cut(s)	808
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	393, 690
BspMI	ACCTGC	1 cut(s)	262
BspQI	GCTCTTC	1 cut(s)	243
BspT104I	TTCGAA	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	887
BsrFI	RCCGGY	1 cut(s)	38
BsrGI	TGTACA	1 cut(s)	937
BsrI	ACTGG	4 cut(s)	484, 550, 658, 977
BssAI	RCCGGY	1 cut(s)	38
BssMI	GATC	2 cut(s)	472, 912
BssNI	GRCGYC	1 cut(s)	967
Bst2UI	CCWGG	2 cut(s)	311, 396
Bst4CI	ACNGT	1 cut(s)	947
Bst6I	CTCTTC	3 cut(s)	243, 272, 399
BstACI	GRCGYC	1 cut(s)	967
BstAUI	TGTACA	1 cut(s)	937
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	3 cut(s)	54, 124, 744
BstDEI	CTNAG	1 cut(s)	816
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	2 cut(s)	475, 915
BstMAI	GTCTC	2 cut(s)	176, 814
BstMBI	GATC	2 cut(s)	472, 912
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 35, 964
BstNI	CCWGG	2 cut(s)	311, 396
BstNSI	RCATGY	3 cut(s)	257, 559, 619
BstSCI	CCNGG	2 cut(s)	309, 394
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	3 cut(s)	47, 106, 523
BstV2I	GAAGAC	2 cut(s)	138, 323
BsuRI	GGCC	2 cut(s)	309, 660
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	997
BtsIMutI	CAGTG	2 cut(s)	970, 997
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	3 cut(s)	54, 124, 744
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	689
CseI	GACGC	1 cut(s)	956
Csp6I	GTAC	2 cut(s)	502, 938
CviAII	CATG	5 cut(s)	254, 556, 616, 683, 824
CviQI	GTAC	2 cut(s)	502, 938
DdeI	CTNAG	1 cut(s)	816
DpnI	GATC	2 cut(s)	474, 914
DpnII	GATC	2 cut(s)	472, 912
DraIII	CACNNNGTG	1 cut(s)	520
Eam1104I	CTCTTC	3 cut(s)	243, 272, 399
EarI	CTCTTC	3 cut(s)	243, 272, 399
EciI	GGCGGA	1 cut(s)	547
Ecl136II	GAGCTC	1 cut(s)	112
Eco147I	AGGCCT	1 cut(s)	660
Eco24I	GRGCYC	2 cut(s)	114, 768
Eco47I	GGWCC	1 cut(s)	689
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	944
Eco88I	CYCGRG	1 cut(s)	888
EcoICRI	GAGCTC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	309, 394
EcoT38I	GRGCYC	2 cut(s)	114, 768
FaeI	CATG	5 cut(s)	257, 559, 619, 686, 827
FaqI	GGGAC	1 cut(s)	702
FatI	CATG	5 cut(s)	253, 555, 615, 682, 823
FbaI	TGATCA	2 cut(s)	472, 912
FblI	GTMKAC	1 cut(s)	989
Fnu4HI	GCNGC	3 cut(s)	36, 120, 512
FokI	GGATG	1 cut(s)	360
FriOI	GRGCYC	2 cut(s)	114, 768
Fsp4HI	GCNGC	3 cut(s)	36, 120, 512
FspBI	CTAG	2 cut(s)	186, 645
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	3 cut(s)	36, 120, 512
GsuI	CTGGAG	2 cut(s)	332, 675
HaeIII	GGCC	2 cut(s)	309, 660
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	956
HhaI	GCGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	967
Hin1II	CATG	5 cut(s)	257, 559, 619, 686, 827
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	2 cut(s)	137, 802
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	3 cut(s)	191, 286, 840
Hpy166II	GTNNAC	3 cut(s)	637, 940, 990
Hpy188I	TCNGA	5 cut(s)	93, 403, 477, 613, 963
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	3 cut(s)	637, 940, 990
HpyAV	CCTTC	4 cut(s)	196, 337, 671, 766
HpyCH4III	ACNGT	1 cut(s)	947
HpyCH4V	TGCA	4 cut(s)	35, 100, 746, 781
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 35, 964
HpyF3I	CTNAG	1 cut(s)	816
Hsp92I	GRCGYC	1 cut(s)	967
Hsp92II	CATG	5 cut(s)	257, 559, 619, 686, 827
HspAI	GCGC	1 cut(s)	50
Ksp22I	TGATCA	2 cut(s)	472, 912
Kzo9I	GATC	2 cut(s)	472, 912
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	3 cut(s)	47, 106, 523
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	2 cut(s)	186, 645
MaeIII	GTNAC	2 cut(s)	41, 968
MalI	GATC	2 cut(s)	474, 914
MbiI	CCGCTC	1 cut(s)	887
MboI	GATC	2 cut(s)	472, 912
MboII	GAAGA	6 cut(s)	138, 147, 260, 289, 328, 416
MfeI	CAATTG	1 cut(s)	30
MhlI	GDGCHC	2 cut(s)	114, 768
MluCI	AATT	9 cut(s)	15, 30, 94, 209, 356, 454, 732, 787, 897
MseI	TTAA	6 cut(s)	87, 105, 414, 435, 843, 1010
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	311, 396
MunI	CAATTG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	596
MvaI	CCWGG	2 cut(s)	311, 396
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	26, 35, 964
NdeII	GATC	2 cut(s)	472, 912
NlaIII	CATG	5 cut(s)	257, 559, 619, 686, 827
NlaIV	GGNNCC	2 cut(s)	393, 690
NmeAIII	GCCGAG	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	968
NspI	RCATGY	3 cut(s)	257, 559, 619
NspV	TTCGAA	1 cut(s)	13
PaeR7I	CTCGAG	1 cut(s)	888
PaqCI	CACCTGC	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	660
PciI	ACATGT	2 cut(s)	555, 615
PciSI	GCTCTTC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PctI	GAATGC	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	137, 802
PkrI	GCNGC	3 cut(s)	37, 121, 513
PscI	ACATGT	2 cut(s)	555, 615
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	309, 394
PspGI	CCWGG	2 cut(s)	309, 394
PspN4I	GGNNCC	2 cut(s)	393, 690
PspPI	GGNCC	1 cut(s)	689
PspXI	VCTCGAGB	1 cut(s)	888
RsaI	GTAC	2 cut(s)	503, 939
RsaNI	GTAC	2 cut(s)	502, 938
SacI	GAGCTC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	6 cut(s)	87, 105, 414, 435, 843, 1010
SatI	GCNGC	3 cut(s)	36, 120, 512
Sau3AI	GATC	2 cut(s)	472, 912
Sau96I	GGNCC	1 cut(s)	689
ScrFI	CCNGG	2 cut(s)	311, 396
SduI	GDGCHC	2 cut(s)	114, 768
SetI	ASST	9 cut(s)	114, 198, 276, 631, 678, 724, 895, 960, 1030
SfaNI	GCATC	1 cut(s)	161
Sfr274I	CTCGAG	1 cut(s)	888
SfuI	TTCGAA	1 cut(s)	13
SinI	GGWCC	1 cut(s)	689
SlaI	CTCGAG	1 cut(s)	888
SmlI	CTYRAG	1 cut(s)	888
SmoI	CTYRAG	1 cut(s)	888
SpeI	ACTAGT	1 cut(s)	185
Sse9I	AATT	9 cut(s)	15, 30, 94, 209, 356, 454, 732, 787, 897
SseBI	AGGCCT	1 cut(s)	660
SsiI	CCGC	3 cut(s)	20, 532, 885
SspI	AATATT	1 cut(s)	717
SspMI	CTAG	2 cut(s)	186, 645
SstI	GAGCTC	1 cut(s)	114
StuI	AGGCCT	1 cut(s)	660
StyD4I	CCNGG	2 cut(s)	309, 394
TaaI	ACNGT	1 cut(s)	947
TaqI	TCGA	4 cut(s)	13, 135, 458, 889
TaqII	GACCGA	1 cut(s)	706
TasI	AATT	9 cut(s)	15, 30, 94, 209, 356, 454, 732, 787, 897
TatI	WGTACW	2 cut(s)	501, 937
TfiI	GAWTC	2 cut(s)	137, 802
Tru1I	TTAA	6 cut(s)	87, 105, 414, 435, 843, 1010
Tru9I	TTAA	6 cut(s)	87, 105, 414, 435, 843, 1010
TscAI	CASTG	2 cut(s)	977, 1004
TseFI	GTSAC	1 cut(s)	968
TseI	GCWGC	3 cut(s)	35, 119, 511
Tsp45I	GTSAC	1 cut(s)	968
TspDTI	ATGAA	2 cut(s)	362, 653
TspRI	CASTG	2 cut(s)	977, 1004
VpaK11BI	GGWCC	1 cut(s)	689
XagI	CCTNNNNNAGG	1 cut(s)	127
XapI	RAATTY	3 cut(s)	94, 454, 787
XceI	RCATGY	3 cut(s)	257, 559, 619
XhoI	CTCGAG	1 cut(s)	888
XmiI	GTMKAC	1 cut(s)	989
XspI	CTAG	2 cut(s)	186, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.