Rroxscaffold_5G00364650

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010192
Physical Location & Seq
Forward (+)
45861541 .. 45864869
3329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364650.1

Sequence Viewer

Length: 1056 bp
ATGGATGGTAACAAGGATGAAGCTTTGAGATGTGTTCGTATTGCGGAGGAGGCAATTGCAGCCGGTAACAAAGCGCGTGCTACCAAGTTTATCAAAATAGCCCAACGCCTTAATCAGAATTTGCAAGTTAATGAGCTCTTGGCTGCTTGCGAGAGGCTCGATTCGGGGTCTTCGGCATCTTCCACTCAGGAAAAGGGTGTTGGTGAGGCTAGTAAGGAGGTTGGGAAGGAGAAATTGGGGCAGGGGTTGAATGGGGAGAGGAGTTATACTGAAGAGCATGTTCAGTTGATTAGGCAGGTGAAGAGGAATAAAGATTATTATGCTATTCTCGGTGTGGAGAAGACTTGCTCGGTTGAGGATATTAGGAAGGCTTATAGGAAATTGTCGTTGAAAGTTCATCCTGACAAGAACAAGGCTCCTGGTTCGGAAGAGGCGTTTAAGATTGTGAGCAAGGCTTTTAAGTGTTTGAGTGACGTGAATTCGAGGAGGCAGTATGATCAGACTGGATTGGTTGAGGAGTTTGAGTACAACCAACAGCACGATGTGAGGAGGAGGCGGAGGAGGAGAACTGGGAATGACATGTTTGATGATGATTTTGACCCCGATGAGATATTCAGGGCATTCTTTGGTCAGTCAGACGTGTTTAGGACAGGTCAAGTTTACAGGACTAGAGGAACTGGTGGCCTTCATAGGGAGGAGGTTCAGCATGGGGGACTGAACATTATGCTTCTTATTCAAATATTACCTTTCTTCGTAATTTTATTGCTTGCATATCTGCCCTTTACAGAGCCCGAATATGCTTTGCATAAGAATTACAACTACCAGATTCCCAAGACAACTGAGAGACATGGAGTGGAGTTTTTTGTTAAATCACCAAGATTTGATGAGAGTTATCCTCTTGGAAGTTCTGCTCGAGCTAAAATTGAGGTCAGCGTGATCAAGGATTACAAAAATGTGCTTGTACACTACTGTCGTGTTGAGCTTCAGAGGCGTCACTGGAATAAGAAAATGTCTACTCCTCACTGCGATAAGTTAAGCGCCCTTGAAGTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DUF1977 DnaJ

Protein Analysis

351

Amino Acids

40.34

Weight (kDa)

9.1

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 105 - 166 6.2e-24 DnaJ domain
DUF1977 PF09320 262 - 332 5.8e-07 Domain of unknown function (DUF1977)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 286
AccI GTMKAC 1 cut(s) 1013
AccII CGCG 1 cut(s) 76
AciI CCGC 2 cut(s) 44, 556
AcsI RAATTY 2 cut(s) 118, 478
AcuI CTGAAG 2 cut(s) 291, 968
AcyI GRCGYC 1 cut(s) 991
AdeI CACNNNGTG 1 cut(s) 544
AfaI GTAC 2 cut(s) 527, 963
AfiI CCNNNNNNNGG 1 cut(s) 691
AflIII ACRYGT 2 cut(s) 579, 639
AgsI TTSAA 4 cut(s) 250, 391, 737, 1046
AjiI CACGTC 2 cut(s) 475, 640
AjnI CCWGG 1 cut(s) 418
AjuI GAANNNNNNNTTGG 4 cut(s) 183, 215, 218, 250
AluBI AGCT 5 cut(s) 23, 136, 917, 982, 1052
AluI AGCT 5 cut(s) 23, 136, 917, 982, 1052
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 838
Ama87I CYCGRG 1 cut(s) 912
AoxI GGCC 1 cut(s) 682
ApeKI GCWGC 2 cut(s) 59, 143
ApoI RAATTY 2 cut(s) 118, 478
AspLEI GCGC 2 cut(s) 76, 1040
AsuHPI GGTGA 3 cut(s) 215, 310, 864
AvaI CYCGRG 1 cut(s) 912
BanII GRGCYC 2 cut(s) 138, 792
BbsI GAAGAC 2 cut(s) 162, 347
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 71, 130
BciT130I CCWGG 1 cut(s) 420
BclI TGATCA 2 cut(s) 496, 936
BcoDI GTCTC 1 cut(s) 838
BfaI CTAG 2 cut(s) 210, 669
BfoI RGCGCY 1 cut(s) 1041
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 2 cut(s) 60, 144
BlsI GCNGC 2 cut(s) 61, 145
Bme1390I CCNGG 1 cut(s) 420
BmeT110I CYCGRG 1 cut(s) 912
BmgBI CACGTC 2 cut(s) 475, 640
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 420
BmrI ACTGGG 1 cut(s) 579
BmsI GCATC 1 cut(s) 185
BmuI ACTGGG 1 cut(s) 579
BpiI GAAGAC 2 cut(s) 162, 347
BplI GAGNNNNNCTC 2 cut(s) 880, 912
BsaHI GRCGYC 1 cut(s) 991
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 1 cut(s) 691
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 4 cut(s) 508, 574, 682, 1001
BseBI CCWGG 1 cut(s) 420
BseGI GGATG 3 cut(s) 10, 22, 397
BseLI CCNNNNNNNGG 1 cut(s) 691
BseMII CTCAG 2 cut(s) 200, 831
BseNI ACTGG 4 cut(s) 508, 574, 682, 1001
BseXI GCAGC 2 cut(s) 71, 130
Bsh1236I CGCG 1 cut(s) 76
BshFI GGCC 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 912
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 1 cut(s) 691
BsmAI GTCTC 1 cut(s) 838
BsmFI GGGAC 1 cut(s) 726
BsmI GAATGC 1 cut(s) 620
BsnI GGCC 1 cut(s) 684
BsoBI CYCGRG 1 cut(s) 912
Bsp1286I GDGCHC 2 cut(s) 138, 792
Bsp1407I TGTACA 1 cut(s) 961
Bsp143I GATC 2 cut(s) 496, 936
BspACI CCGC 2 cut(s) 44, 556
BspANI GGCC 1 cut(s) 684
BspCNI CTCAG 2 cut(s) 199, 832
BspFNI CGCG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 417
BspMI ACCTGC 1 cut(s) 286
BspQI GCTCTTC 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 961
BsrI ACTGG 4 cut(s) 508, 574, 682, 1001
BssAI RCCGGY 1 cut(s) 62
BssMI GATC 2 cut(s) 496, 936
BssNI GRCGYC 1 cut(s) 991
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 971
Bst6I CTCTTC 3 cut(s) 267, 296, 423
BstACI GRCGYC 1 cut(s) 991
BstAUI TGTACA 1 cut(s) 961
BstC8I GCNNGC 3 cut(s) 78, 148, 768
BstDEI CTNAG 2 cut(s) 186, 840
BstF5I GGATG 3 cut(s) 10, 22, 397
BstFNI CGCG 1 cut(s) 76
BstH2I RGCGCY 1 cut(s) 1041
BstHHI GCGC 2 cut(s) 76, 1040
BstKTI GATC 2 cut(s) 499, 939
BstMAI GTCTC 1 cut(s) 838
BstMBI GATC 2 cut(s) 496, 936
BstMWI GCNNNNNNNGC 3 cut(s) 50, 59, 988
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 2 cut(s) 281, 583
BstSCI CCNGG 1 cut(s) 418
BstUI CGCG 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 71, 130
BstV2I GAAGAC 2 cut(s) 162, 347
BsuRI GGCC 1 cut(s) 684
BtrI CACGTC 2 cut(s) 475, 640
BtsCI GGATG 3 cut(s) 10, 22, 397
BtsI GCAGTG 1 cut(s) 1021
BtsIMutI CAGTG 2 cut(s) 994, 1021
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 3 cut(s) 78, 148, 768
CfoI GCGC 2 cut(s) 76, 1040
Cfr10I RCCGGY 1 cut(s) 62
CseI GACGC 1 cut(s) 980
Csp6I GTAC 2 cut(s) 526, 962
CviAII CATG 4 cut(s) 278, 580, 707, 848
CviQI GTAC 2 cut(s) 526, 962
DdeI CTNAG 2 cut(s) 186, 840
DpnI GATC 2 cut(s) 498, 938
DpnII GATC 2 cut(s) 496, 936
DraIII CACNNNGTG 1 cut(s) 544
Eam1104I CTCTTC 3 cut(s) 267, 296, 423
EarI CTCTTC 3 cut(s) 267, 296, 423
EciI GGCGGA 1 cut(s) 571
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 2 cut(s) 138, 792
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 2 cut(s) 291, 968
Eco88I CYCGRG 1 cut(s) 912
EcoICRI GAGCTC 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 418
EcoT38I GRGCYC 2 cut(s) 138, 792
FaeI CATG 4 cut(s) 281, 583, 710, 851
FaqI GGGAC 1 cut(s) 726
FatI CATG 4 cut(s) 277, 579, 706, 847
FbaI TGATCA 2 cut(s) 496, 936
FblI GTMKAC 1 cut(s) 1013
Fnu4HI GCNGC 2 cut(s) 60, 144
FokI GGATG 3 cut(s) 17, 29, 384
FriOI GRGCYC 2 cut(s) 138, 792
Fsp4HI GCNGC 2 cut(s) 60, 144
FspBI CTAG 2 cut(s) 210, 669
GlaI GCGC 2 cut(s) 75, 1039
GluI GCNGC 2 cut(s) 60, 144
HaeII RGCGCY 1 cut(s) 1041
HaeIII GGCC 1 cut(s) 684
HapII CCGG 1 cut(s) 63
HgaI GACGC 1 cut(s) 980
HhaI GCGC 2 cut(s) 76, 1040
Hin1I GRCGYC 1 cut(s) 991
Hin1II CATG 4 cut(s) 281, 583, 710, 851
Hin6I GCGC 2 cut(s) 74, 1038
HinP1I GCGC 2 cut(s) 74, 1038
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 2 cut(s) 161, 826
HpaII CCGG 1 cut(s) 63
HphI GGTGA 3 cut(s) 215, 310, 864
Hpy166II GTNNAC 3 cut(s) 661, 964, 1014
Hpy188I TCNGA 5 cut(s) 117, 427, 501, 637, 987
Hpy188III TCNNGA 2 cut(s) 188, 401
Hpy8I GTNNAC 3 cut(s) 661, 964, 1014
HpyAV CCTTC 3 cut(s) 220, 361, 695
HpyCH4III ACNGT 1 cut(s) 971
HpyCH4IV ACGT 2 cut(s) 474, 639
HpyCH4V TGCA 4 cut(s) 59, 124, 770, 805
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 59, 988
HpyF3I CTNAG 2 cut(s) 186, 840
HpySE526I ACGT 2 cut(s) 474, 639
Hsp92I GRCGYC 1 cut(s) 991
Hsp92II CATG 4 cut(s) 281, 583, 710, 851
HspAI GCGC 2 cut(s) 74, 1038
Ksp22I TGATCA 2 cut(s) 496, 936
Kzo9I GATC 2 cut(s) 496, 936
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 2 cut(s) 71, 130
LweI GCATC 1 cut(s) 185
MaeI CTAG 2 cut(s) 210, 669
MaeII ACGT 2 cut(s) 474, 639
MaeIII GTNAC 4 cut(s) 8, 65, 470, 992
MalI GATC 2 cut(s) 498, 938
MboI GATC 2 cut(s) 496, 936
MboII GAAGA 7 cut(s) 162, 171, 284, 313, 352, 440, 742
MfeI CAATTG 1 cut(s) 54
MhlI GDGCHC 2 cut(s) 138, 792
MluCI AATT 8 cut(s) 54, 118, 233, 380, 478, 756, 811, 921
MseI TTAA 6 cut(s) 111, 129, 438, 459, 867, 1034
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 420
MunI CAATTG 1 cut(s) 54
Mva1269I GAATGC 1 cut(s) 620
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 76
MwoI GCNNNNNNNGC 3 cut(s) 50, 59, 988
NdeII GATC 2 cut(s) 496, 936
NlaIII CATG 4 cut(s) 281, 583, 710, 851
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 470, 992
NspI RCATGY 2 cut(s) 281, 583
PaeR7I CTCGAG 1 cut(s) 912
PaqCI CACCTGC 1 cut(s) 286
PciI ACATGT 1 cut(s) 579
PciSI GCTCTTC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 431
PctI GAATGC 1 cut(s) 620
PfeI GAWTC 2 cut(s) 161, 826
PkrI GCNGC 2 cut(s) 61, 145
PscI ACATGT 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 417
PspXI VCTCGAGB 1 cut(s) 912
RsaI GTAC 2 cut(s) 527, 963
RsaNI GTAC 2 cut(s) 526, 962
SacI GAGCTC 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 6 cut(s) 111, 129, 438, 459, 867, 1034
SatI GCNGC 2 cut(s) 60, 144
Sau3AI GATC 2 cut(s) 496, 936
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 2 cut(s) 138, 792
SfaNI GCATC 1 cut(s) 185
Sfr274I CTCGAG 1 cut(s) 912
SlaI CTCGAG 1 cut(s) 912
SmlI CTYRAG 1 cut(s) 912
SmoI CTYRAG 1 cut(s) 912
Sse9I AATT 8 cut(s) 54, 118, 233, 380, 478, 756, 811, 921
SsiI CCGC 2 cut(s) 44, 556
SspI AATATT 1 cut(s) 741
SspMI CTAG 2 cut(s) 210, 669
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 971
TaiI ACGT 2 cut(s) 477, 642
TaqI TCGA 3 cut(s) 159, 482, 913
TasI AATT 8 cut(s) 54, 118, 233, 380, 478, 756, 811, 921
TatI WGTACW 2 cut(s) 525, 961
TfiI GAWTC 2 cut(s) 161, 826
Tru1I TTAA 6 cut(s) 111, 129, 438, 459, 867, 1034
Tru9I TTAA 6 cut(s) 111, 129, 438, 459, 867, 1034
TscAI CASTG 2 cut(s) 1001, 1028
TseFI GTSAC 2 cut(s) 470, 992
TseI GCWGC 2 cut(s) 59, 143
Tsp45I GTSAC 2 cut(s) 470, 992
TspDTI ATGAA 3 cut(s) 33, 386, 677
TspRI CASTG 2 cut(s) 1001, 1028
XapI RAATTY 2 cut(s) 118, 478
XceI RCATGY 2 cut(s) 281, 583
XhoI CTCGAG 1 cut(s) 912
XmiI GTMKAC 1 cut(s) 1013
XspI CTAG 2 cut(s) 210, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.