AT5G49060

Domain of unknown function (DUF1977)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
19886308 .. 19888571
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G49060.1

Sequence Viewer

Length: 1065 bp
ATGGATGGTAATAAGGATGATGCGTCTCGGTGTTTGAGAATCGCCGAAGACGCCATTGTTTCTGGTGATAAAGAACGAGCGTTGAAATTCATCAATATGGCGAAACGGCTTAATCCAAGTCTCTCTGTTGATGAACTTGTTGCTGCTTGTGACAATCTGGATTCAGTTTCGAGGAATTCTTCTGTTAGCGAGAAGCTTAAAACTATGGACGGTGATGATGATAAGCTTGAGACTGGGAAAATGAAGTATACTGAGGAAAATGTGGATTTGGTTAGGAATATTATAAGAAACAATGATTATTATGCGATTTTGGGTTTGGAAAAGAATTGTTCTGTTGATGAGATTAGAAAAGCTTATAGGAAGTTGTCTTTGAAAGTTCATCCAGATAAGAACAAGGCACCTGGTTCAGAGGAGGCGTTTAAGAAAGTTTCGAAAGCGTTTACTTGTTTGAGTGATGGTAACTCGAGAAGACAGTTTGATCAGGTGGGGATTGTTGATGAGTTTGATCATGTTCAGAGGCGGAATCGTAGGCCGAGGAGGAGATATAATACGCGGAATGATTTCTTTGATGATGAGTTTGATCCTGAAGAGATATTCAGGACGGTTTTTGGTCAACAACGAGAGGTGTTTCGTGCTTCTCATGCTTATAGGACTAGACAACCACGTAACCAATTCCGAGAGGAGGAGATTAATGTTGCTGGACCAAGTTGTTTGACGATTATTCAGATTTTGCCATTCTTTCTGCTTTTGTTGCTGGCTTATTTACCCTTTTCTGAGCCTGACTATTCTCTGCACAAGAACCAGTCTTATCAGATACCAAAGACGACACAGAATACGGAGATTAGTTTTTATGTTAGATCAGCATCAGCCTTTGATGAGAAGTTTCCGCTCAGTAGCTCAGCCCGAGCTAACCTTGAGGGCAACGTGATCAAAGAGTACAAACACTTTCTTTTCCAGTCTTGTCGCATTGAGCTTCAAAAACGTCGGTGGAACAAGAAGATACCAACCCCTCACTGCATCGAACTTCAAGATCGCGGATTTGTTGACAGGCATATACCGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

354

Amino Acids

41.22

Weight (kDa)

8.69

Isoelectric Point (pI)

60.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 99 - 160 1.7e-23 DnaJ domain
DUF1977 PF09320 258 - 329 3.4e-08 Domain of unknown function (DUF1977)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 397
AccBSI CCGCTC 1 cut(s) 889
AccI GTMKAC 1 cut(s) 248
AccII CGCG 2 cut(s) 553, 1035
AciI CCGC 4 cut(s) 520, 553, 887, 1035
AclWI GGATC 1 cut(s) 575
AcsI RAATTY 2 cut(s) 86, 175
AcuI CTGAAG 1 cut(s) 606
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 1 cut(s) 938
AfiI CCNNNNNNNGG 1 cut(s) 682
AgsI TTSAA 4 cut(s) 85, 373, 977, 1028
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 6 cut(s) 196, 226, 353, 897, 908, 973
AluI AGCT 6 cut(s) 196, 226, 353, 897, 908, 973
Alw26I GTCTC 3 cut(s) 30, 125, 224
AlwI GGATC 1 cut(s) 575
Ama87I CYCGRG 2 cut(s) 463, 903
AoxI GGCC 1 cut(s) 530
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 2 cut(s) 86, 175
AseI ATTAAT 1 cut(s) 690
Asp700I GAANNNNTTC 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 701
AsuHPI GGTGA 2 cut(s) 77, 224
AsuII TTCGAA 1 cut(s) 431
AvaI CYCGRG 2 cut(s) 463, 903
AvaII GGWCC 1 cut(s) 701
BanI GGYRCC 1 cut(s) 397
BbsI GAAGAC 2 cut(s) 54, 475
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 449
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 402
BclI TGATCA 3 cut(s) 478, 505, 927
BcoDI GTCTC 3 cut(s) 30, 125, 224
BfaI CTAG 1 cut(s) 654
BisI GCNGC 1 cut(s) 144
BlpI GCTNAGC 1 cut(s) 898
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 402
Bme18I GGWCC 1 cut(s) 701
BmeT110I CYCGRG 2 cut(s) 463, 903
BmgT120I GGNCC 1 cut(s) 701
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 402
BmrI ACTGGG 1 cut(s) 243
BmsI GCATC 3 cut(s) 10, 872, 1026
BmuI ACTGGG 1 cut(s) 243
BpiI GAAGAC 2 cut(s) 54, 475
Bpu1102I GCTNAGC 1 cut(s) 898
Bpu14I TTCGAA 1 cut(s) 431
BpuEI CTTGAG 2 cut(s) 248, 935
BsaAI YACGTR 1 cut(s) 665
BsaBI GATNNNNATC 1 cut(s) 862
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 533
Bsc4I CCNNNNNNNGG 1 cut(s) 682
Bse1I ACTGG 3 cut(s) 238, 802, 955
Bse8I GATNNNNATC 1 cut(s) 862
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 533
BseGI GGATG 3 cut(s) 10, 22, 379
BseJI GATNNNNATC 1 cut(s) 862
BseLI CCNNNNNNNGG 1 cut(s) 682
BseMII CTCAG 4 cut(s) 243, 765, 904, 912
BseNI ACTGG 3 cut(s) 238, 802, 955
BseRI GAGGAG 5 cut(s) 425, 550, 553, 695, 698
BseXI GCAGC 1 cut(s) 130
BsgI GTGCAG 1 cut(s) 776
Bsh1236I CGCG 2 cut(s) 553, 1035
BshFI GGCC 1 cut(s) 532
BshNI GGYRCC 1 cut(s) 397
BsiHKCI CYCGRG 2 cut(s) 463, 903
BslI CCNNNNNNNGG 1 cut(s) 682
BsmAI GTCTC 3 cut(s) 30, 125, 224
BsmBI CGTCTC 1 cut(s) 30
BsnI GGCC 1 cut(s) 532
BsoBI CYCGRG 2 cut(s) 463, 903
Bsp119I TTCGAA 1 cut(s) 431
Bsp143I GATC 6 cut(s) 478, 505, 580, 857, 927, 1030
Bsp1720I GCTNAGC 1 cut(s) 898
BspACI CCGC 4 cut(s) 520, 553, 887, 1035
BspANI GGCC 1 cut(s) 532
BspCNI CTCAG 4 cut(s) 244, 766, 903, 911
BspFNI CGCG 2 cut(s) 553, 1035
BspLI GGNNCC 1 cut(s) 399
BspPI GGATC 1 cut(s) 575
BspT104I TTCGAA 1 cut(s) 431
BspT107I GGYRCC 1 cut(s) 397
BsrBI CCGCTC 1 cut(s) 889
BsrI ACTGG 3 cut(s) 238, 802, 955
BssECI CCNNGG 1 cut(s) 533
BssMI GATC 6 cut(s) 478, 505, 580, 857, 927, 1030
BssNAI GTATAC 1 cut(s) 249
BssNI GRCGYC 1 cut(s) 51
Bst1107I GTATAC 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 3 cut(s) 212, 474, 604
Bst6I CTCTTC 1 cut(s) 582
BstACI GRCGYC 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 665
BstBI TTCGAA 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 756
BstDEI CTNAG 4 cut(s) 252, 774, 890, 898
BstF5I GGATG 3 cut(s) 10, 22, 379
BstFNI CGCG 2 cut(s) 553, 1035
BstKTI GATC 6 cut(s) 481, 508, 583, 860, 930, 1033
BstMAI GTCTC 3 cut(s) 30, 125, 224
BstMBI GATC 6 cut(s) 478, 505, 580, 857, 927, 1030
BstMWI GCNNNNNNNGC 3 cut(s) 50, 641, 751
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 400
BstUI CGCG 2 cut(s) 553, 1035
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 2 cut(s) 54, 475
BstZ17I GTATAC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 532
BtsCI GGATG 3 cut(s) 10, 22, 379
BtsI GCAGTG 1 cut(s) 1012
BtsIMutI CAGTG 1 cut(s) 1012
Cac8I GCNNGC 1 cut(s) 756
Cfr13I GGNCC 1 cut(s) 701
CseI GACGC 2 cut(s) 12, 59
CsiI ACCWGGT 1 cut(s) 400
Csp6I GTAC 1 cut(s) 937
CviAII CATG 2 cut(s) 509, 641
CviQI GTAC 1 cut(s) 937
DdeI CTNAG 4 cut(s) 252, 774, 890, 898
DpnI GATC 6 cut(s) 480, 507, 582, 859, 929, 1032
DpnII GATC 6 cut(s) 478, 505, 580, 857, 927, 1030
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
EciI GGCGGA 1 cut(s) 535
Eco47I GGWCC 1 cut(s) 701
Eco57I CTGAAG 1 cut(s) 606
Eco88I CYCGRG 2 cut(s) 463, 903
EcoRI GAATTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 400
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 2 cut(s) 512, 644
FatI CATG 2 cut(s) 508, 640
FbaI TGATCA 3 cut(s) 478, 505, 927
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 3 cut(s) 17, 29, 366
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 654
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 532
HgaI GACGC 2 cut(s) 12, 59
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 2 cut(s) 512, 644
HincII GTYRAC 2 cut(s) 614, 1045
HindII GTYRAC 2 cut(s) 614, 1045
HindIII AAGCTT 3 cut(s) 194, 224, 351
HinfI GANTC 3 cut(s) 39, 161, 523
HphI GGTGA 2 cut(s) 77, 224
Hpy166II GTNNAC 4 cut(s) 249, 441, 614, 1045
Hpy188I TCNGA 6 cut(s) 409, 516, 677, 726, 775, 813
Hpy188III TCNNGA 6 cut(s) 158, 383, 465, 584, 598, 1028
Hpy8I GTNNAC 4 cut(s) 249, 441, 614, 1045
Hpy99I CGWCG 1 cut(s) 987
HpyCH4III ACNGT 3 cut(s) 212, 474, 604
HpyCH4IV ACGT 3 cut(s) 664, 924, 982
HpyCH4V TGCA 2 cut(s) 793, 1017
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 641, 751
HpyF3I CTNAG 4 cut(s) 252, 774, 890, 898
HpySE526I ACGT 3 cut(s) 664, 924, 982
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 2 cut(s) 512, 644
Ksp22I TGATCA 3 cut(s) 478, 505, 927
Kzo9I GATC 6 cut(s) 478, 505, 580, 857, 927, 1030
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 3 cut(s) 10, 872, 1026
MabI ACCWGGT 1 cut(s) 400
MaeI CTAG 1 cut(s) 654
MaeII ACGT 3 cut(s) 664, 924, 982
MaeIII GTNAC 3 cut(s) 149, 458, 665
MalI GATC 6 cut(s) 480, 507, 582, 859, 929, 1032
MbiI CCGCTC 1 cut(s) 889
MboI GATC 6 cut(s) 478, 505, 580, 857, 927, 1030
MboII GAAGA 5 cut(s) 59, 171, 480, 599, 1009
MluCI AATT 4 cut(s) 86, 175, 325, 671
MroXI GAANNNNTTC 1 cut(s) 560
MseI TTAA 4 cut(s) 111, 198, 420, 690
MslI CAYNNNNRTG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
MvnI CGCG 2 cut(s) 553, 1035
MwoI GCNNNNNNNGC 3 cut(s) 50, 641, 751
NdeII GATC 6 cut(s) 478, 505, 580, 857, 927, 1030
NlaIII CATG 2 cut(s) 512, 644
NlaIV GGNNCC 1 cut(s) 399
NmeAIII GCCGAG 1 cut(s) 558
NmuCI GTSAC 1 cut(s) 149
NspV TTCGAA 1 cut(s) 431
PaeR7I CTCGAG 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 3 cut(s) 39, 161, 523
PkrI GCNGC 1 cut(s) 145
Ppu21I YACGTR 1 cut(s) 665
PshBI ATTAAT 1 cut(s) 690
PsiI TTATAA 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 1 cut(s) 701
RsaI GTAC 1 cut(s) 938
RsaNI GTAC 1 cut(s) 937
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 4 cut(s) 111, 198, 420, 690
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 6 cut(s) 478, 505, 580, 857, 927, 1030
Sau96I GGNCC 1 cut(s) 701
ScrFI CCNGG 1 cut(s) 402
SexAI ACCWGGT 1 cut(s) 400
SfaNI GCATC 3 cut(s) 10, 872, 1026
Sfr274I CTCGAG 1 cut(s) 463
SfuI TTCGAA 1 cut(s) 431
SinI GGWCC 1 cut(s) 701
SlaI CTCGAG 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 3 cut(s) 227, 463, 914
SmoI CTYRAG 3 cut(s) 227, 463, 914
Sse9I AATT 4 cut(s) 86, 175, 325, 671
SsiI CCGC 4 cut(s) 520, 553, 887, 1035
SspI AATATT 1 cut(s) 280
SspMI CTAG 1 cut(s) 654
StyD4I CCNGG 1 cut(s) 400
TaaI ACNGT 3 cut(s) 212, 474, 604
TaiI ACGT 3 cut(s) 667, 927, 985
TaqI TCGA 4 cut(s) 170, 431, 464, 1020
TasI AATT 4 cut(s) 86, 175, 325, 671
TatI WGTACW 1 cut(s) 936
TfiI GAWTC 3 cut(s) 39, 161, 523
Tru1I TTAA 4 cut(s) 111, 198, 420, 690
Tru9I TTAA 4 cut(s) 111, 198, 420, 690
TscAI CASTG 1 cut(s) 1019
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 4 cut(s) 79, 147, 257, 368
TspGWI ACGGA 1 cut(s) 851
TspRI CASTG 1 cut(s) 1019
VpaK11BI GGWCC 1 cut(s) 701
VspI ATTAAT 1 cut(s) 690
XapI RAATTY 2 cut(s) 86, 175
XhoI CTCGAG 1 cut(s) 463
XmiI GTMKAC 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.