RLG00000007603

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017546
Physical Location & Seq
Forward (+)
18897103 .. 18897465
363 bp
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UTR
Exon/CDS
Intron
RLM00000007603

Sequence Viewer

Length: 363 bp
ATGATAGATCAAGACAGGCAAGGAGCAGGAGCACCCCATGGAGTTCTACTAGTAGTTGTGGTGGTGTTGGTGATATTCGTCCCCTTCTTCCTCGGTGAGCAAGGCGAGGCCATAACTGAAGGCATCGCCGAGCTTCTCAGCCCCGTCGGGCTTCTCCTCCTCCCCATCATCCTCCTCCTCACCATCCAGTTCTTGTCCTCGCCTCACGGCTCTTTTGTCTCCTCCATCTTCTCCACTGGAGAGCCCGACACCATCCACAGGGTCAGTGGCTCCCCGGTGGGCGTCGCATTGTTTCTTCTACTCGTCTTGTTTCTTCTCTACAATCGCATGTCGATCTTCGGTGGCGGCGACGATGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.74

Weight (kDa)

4.35

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06890
fragaria_vesca FvH4_4g18340
malus_domestica MD13G1167200.v1.1
prunus_persica Prupe.1G134500_v2.0.a1
pyrus_communis pycom13g14300
rosa_chinensis RchiOBHm_Chr4g0422811
rosa_laevigata RLG00000007603
rosa_multiflora Rmu_co8147480.1_g000001 Rmu_sc0000830.1_g000047
rosa_roxburghii Rroxscaffold_5G00364660
rosa_rugosa Rorug04G0181600
rosa_wichuraiana Rw4G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 258
AhlI ACTAGT 1 cut(s) 49
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 223
AoxI GGCC 1 cut(s) 108
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 82, 107, 172
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 34
BccI CCATC 4 cut(s) 173, 191, 233, 260
BceAI ACGGC 1 cut(s) 223
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 223
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 1 cut(s) 50
BisI GCNGC 1 cut(s) 346
BlsI GCNGC 1 cut(s) 347
Bme1390I CCNGG 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 37, 91, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 187, 241
BseDI CCNNGG 3 cut(s) 37, 91, 273
BseGI GGATG 3 cut(s) 168, 183, 252
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 151
BseNI ACTGG 2 cut(s) 187, 241
BseRI GAGGAG 5 cut(s) 146, 149, 164, 167, 211
BshFI GGCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 34, 246
Bsp143I GATC 2 cut(s) 7, 333
Bsp19I CCATGG 1 cut(s) 37
BspACI CCGC 1 cut(s) 345
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 271
BsrI ACTGG 2 cut(s) 187, 241
BssECI CCNNGG 3 cut(s) 37, 91, 273
BssMI GATC 2 cut(s) 7, 333
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 137
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 3 cut(s) 168, 183, 252
BstKTI GATC 2 cut(s) 10, 336
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 2 cut(s) 7, 333
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 273
BsuRI GGCC 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 37
BtgZI GCGATG 1 cut(s) 109
BtsCI GGATG 3 cut(s) 168, 183, 252
BtsIMutI CAGTG 2 cut(s) 234, 271
CseI GACGC 1 cut(s) 271
CviAII CATG 2 cut(s) 38, 328
CviJI RGCY 7 cut(s) 110, 133, 141, 151, 210, 244, 270
CviKI_1 RGCY 7 cut(s) 110, 133, 141, 151, 210, 244, 270
DdeI CTNAG 1 cut(s) 137
DpnI GATC 2 cut(s) 9, 335
DpnII GATC 2 cut(s) 7, 333
Eco130I CCWWGG 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 2 cut(s) 41, 331
FaiI YATR 3 cut(s) 39, 113, 329
FaqI GGGAC 1 cut(s) 65
FatI CATG 2 cut(s) 37, 327
Fnu4HI GCNGC 1 cut(s) 346
FokI GGATG 3 cut(s) 155, 170, 239
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 346
FspBI CTAG 1 cut(s) 50
GluI GCNGC 1 cut(s) 346
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 110
HapII CCGG 1 cut(s) 275
HgaI GACGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 2 cut(s) 41, 331
HpaII CCGG 1 cut(s) 275
HphI GGTGA 3 cut(s) 82, 107, 172
Hpy188III TCNNGA 1 cut(s) 11
Hpy99I CGWCG 3 cut(s) 149, 287, 353
HpyAV CCTTC 2 cut(s) 94, 113
HpyF3I CTNAG 1 cut(s) 137
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 2 cut(s) 41, 331
Kzo9I GATC 2 cut(s) 7, 333
LmnI GCTCC 3 cut(s) 23, 29, 275
LpnPI CCDG 5 cut(s) 12, 200, 222, 244, 288
LweI GCATC 1 cut(s) 132
MaeI CTAG 1 cut(s) 50
MalI GATC 2 cut(s) 9, 335
MboI GATC 2 cut(s) 7, 333
MboII GAAGA 5 cut(s) 79, 220, 287, 305, 328
MhlI GDGCHC 2 cut(s) 34, 246
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 275
NciI CCSGG 1 cut(s) 275
NcoI CCATGG 1 cut(s) 37
NdeII GATC 2 cut(s) 7, 333
NlaIII CATG 2 cut(s) 41, 331
NlaIV GGNNCC 1 cut(s) 271
NmeAIII GCCGAG 1 cut(s) 154
NspI RCATGY 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PkrI GCNGC 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 271
SatI GCNGC 1 cut(s) 346
Sau3AI GATC 2 cut(s) 7, 333
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 2 cut(s) 34, 246
SetI ASST 1 cut(s) 135
SfaNI GCATC 1 cut(s) 132
SpeI ACTAGT 1 cut(s) 49
SsiI CCGC 1 cut(s) 345
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 37
TaqI TCGA 1 cut(s) 332
TauI GCSGC 1 cut(s) 348
TscAI CASTG 2 cut(s) 241, 271
TspRI CASTG 2 cut(s) 241, 271
XceI RCATGY 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 263
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.