MD13G1167200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0017546
Physical Location & Seq
Forward (+)
13532332 .. 13532697
366 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1167200.v1.1.491

Sequence Viewer

Length: 366 bp
ATGATAGATCAAGAGAGGCCAGCCGGAACTCCCCCCCACGGGATTCTGCTAGCGGTGGTGGTCGTGGCGGTGATCATGGTGCCGTACTTTCTAGGTGACCAAGGCGAGGCCATAACGGAAGCCATCTCCGAGCTTTTGAGCCCGTTGGGTCTTCTCCTTCTCCCCATTATTCTCCTACTCACCATTCAGTTTCTGTCATCGGACAGCGGCTCATTCGTCTCCTCCTTGTTCTCGACCGGAGAGCCCGACACCATCCACAGAGTCAGTGGCTCCCCGGTTGGGGTTGCATTGTTTCTCGTCCTTGTCATATTCCTTCTTTACAATAGGGTTTCGATCTTTGGCGGCGGCGACGACGGGGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

12.74

Weight (kDa)

4.09

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06890
fragaria_vesca FvH4_4g18340
malus_domestica MD13G1167200.v1.1
prunus_persica Prupe.1G134500_v2.0.a1
pyrus_communis pycom13g14300
rosa_chinensis RchiOBHm_Chr4g0422811
rosa_laevigata RLG00000007603
rosa_multiflora Rmu_co8147480.1_g000001 Rmu_sc0000830.1_g000047
rosa_roxburghii Rroxscaffold_5G00364660
rosa_rugosa Rorug04G0181600
rosa_wichuraiana Rw4G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AciI CCGC 5 cut(s) 53, 68, 207, 342, 345
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 5 cut(s) 38, 39, 106, 279, 280
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 223
AlwNI CAGNNNCTG 1 cut(s) 193
AoxI GGCC 2 cut(s) 17, 108
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 82, 107, 172
AsuNHI GCTAGC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 2 cut(s) 143, 246
BbsI GAAGAC 1 cut(s) 143
BccI CCATC 2 cut(s) 131, 260
BceAI ACGGC 1 cut(s) 67
BclI TGATCA 1 cut(s) 72
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 2 cut(s) 50, 92
BisI GCNGC 3 cut(s) 208, 343, 346
BlsI GCNGC 3 cut(s) 209, 344, 347
Bme1390I CCNGG 1 cut(s) 275
BmiI GGNNCC 2 cut(s) 81, 271
BmrFI CCNGG 1 cut(s) 275
BmtI GCTAGC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 275
BsaJI CCNNGG 3 cut(s) 37, 100, 273
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 39, 106, 279, 280
BseDI CCNNGG 3 cut(s) 37, 100, 273
BseGI GGATG 2 cut(s) 252, 364
BseLI CCNNNNNNNGG 5 cut(s) 38, 39, 106, 279, 280
BseRI GAGGAG 1 cut(s) 211
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 2 cut(s) 19, 110
BshNI GGYRCC 1 cut(s) 79
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 3 cut(s) 24, 237, 275
BslI CCNNNNNNNGG 5 cut(s) 38, 39, 106, 279, 280
BsmAI GTCTC 1 cut(s) 223
BsmBI CGTCTC 1 cut(s) 223
BsnI GGCC 2 cut(s) 19, 110
Bsp1286I GDGCHC 2 cut(s) 143, 246
Bsp143I GATC 3 cut(s) 7, 72, 333
BspACI CCGC 5 cut(s) 53, 68, 207, 342, 345
BspANI GGCC 2 cut(s) 19, 110
BspLI GGNNCC 2 cut(s) 81, 271
BspOI GCTAGC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 79
BssECI CCNNGG 3 cut(s) 37, 100, 273
BssMI GATC 3 cut(s) 7, 72, 333
BssT1I CCWWGG 1 cut(s) 100
BstC8I GCNNGC 2 cut(s) 21, 51
BstDSI CCRYGG 1 cut(s) 37
BstEII GGTNACC 1 cut(s) 95
BstF5I GGATG 2 cut(s) 252, 364
BstKTI GATC 3 cut(s) 10, 75, 336
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 3 cut(s) 7, 72, 333
BstMCI CGRYCG 1 cut(s) 237
BstPI GGTNACC 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 143
BsuRI GGCC 2 cut(s) 19, 110
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 2 cut(s) 252, 364
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 21, 51
CaiI CAGNNNCTG 1 cut(s) 193
Csp6I GTAC 1 cut(s) 85
CviAII CATG 1 cut(s) 76
CviJI RGCY 9 cut(s) 19, 23, 110, 122, 133, 141, 210, 244, 270
CviKI_1 RGCY 9 cut(s) 19, 23, 110, 122, 133, 141, 210, 244, 270
CviQI GTAC 1 cut(s) 85
DpnI GATC 3 cut(s) 9, 74, 335
DpnII GATC 3 cut(s) 7, 72, 333
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 2 cut(s) 143, 246
Eco91I GGTNACC 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 2 cut(s) 143, 246
ErhI CCWWGG 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 1 cut(s) 79
FaiI YATR 3 cut(s) 77, 113, 308
FatI CATG 1 cut(s) 75
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 208, 343, 346
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 2 cut(s) 143, 246
Fsp4HI GCNGC 3 cut(s) 208, 343, 346
FspBI CTAG 2 cut(s) 50, 92
GluI GCNGC 3 cut(s) 208, 343, 346
HaeIII GGCC 2 cut(s) 19, 110
HapII CCGG 3 cut(s) 24, 237, 275
Hin1II CATG 1 cut(s) 79
HinfI GANTC 2 cut(s) 43, 261
HpaII CCGG 3 cut(s) 24, 237, 275
HphI GGTGA 3 cut(s) 82, 107, 172
Hpy188I TCNGA 2 cut(s) 130, 202
Hpy188III TCNNGA 2 cut(s) 11, 232
Hpy99I CGWCG 2 cut(s) 353, 356
HpyAV CCTTC 2 cut(s) 167, 323
HpyCH4V TGCA 1 cut(s) 287
Hsp92II CATG 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 3 cut(s) 7, 72, 333
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 4 cut(s) 33, 37, 250, 288
MaeI CTAG 2 cut(s) 50, 92
MaeIII GTNAC 1 cut(s) 95
MalI GATC 3 cut(s) 9, 74, 335
MboI GATC 3 cut(s) 7, 72, 333
MboII GAAGA 1 cut(s) 143
MhlI GDGCHC 2 cut(s) 143, 246
MlyI GAGTC 1 cut(s) 270
MnlI CCTC 3 cut(s) 9, 100, 232
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 3 cut(s) 24, 237, 275
MspR9I CCNGG 1 cut(s) 275
NciI CCSGG 1 cut(s) 275
NdeII GATC 3 cut(s) 7, 72, 333
NheI GCTAGC 1 cut(s) 49
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 81, 271
NmuCI GTSAC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 3 cut(s) 209, 344, 347
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PspEI GGTNACC 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 81, 271
PstNI CAGNNNCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SatI GCNGC 3 cut(s) 208, 343, 346
Sau3AI GATC 3 cut(s) 7, 72, 333
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 2 cut(s) 143, 246
SetI ASST 2 cut(s) 97, 135
SsiI CCGC 5 cut(s) 53, 68, 207, 342, 345
SspMI CTAG 2 cut(s) 50, 92
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 100
TaqI TCGA 2 cut(s) 233, 332
TauI GCSGC 3 cut(s) 210, 345, 348
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 263
XspI CTAG 2 cut(s) 50, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.