Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0018835

Physical Location & Seq

Genomic Coordinates Forward (+)

23702040 .. 23703061

Gene Structure 1022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGACACCTCTGACCCCATGCCCACAACCAACACCTTTGTTCGAACGAGTCATTGCAACGATCTTATTGATGACACATGCAAAGGGACACCAAAGCCCGTCCTCTGTGTCTCCGTTCTCAGAGCAGACCCCCGAAGTGAAGGGGGTGATGTGAATGATTTTGCCTTTATAATGGTCGGTGAAGTCGAAGTTAAGGCATCTGATGCCATGCAACAGATCGGTCGGCTAAGTAAAACCAAACCTGTAAGTGATTGTCGAGAAAATTATGTTGTCGTTGTTCGAGATGACATACCCCAAGCCGAGGATGCGGCTAAGGGCGGAGATGCCGGCAAGGCGACGCAACTCATGAATGACGTTGTTGGTAAGGCTGATTCATGCGAACGTGGTTTTCACGGCCGTTCTCTTCTAACTAAGTGGAACAATGCTGTAAAAGATTTCGCTTCTGTGGCTGCAGCATTATCAAGCAAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

158

Amino Acids

16.84

Weight (kDa)

5.15

Isoelectric Point (pI)

19.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	21 - 153	8.7e-16	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20430
rosa_multiflora	Rmu_sc0000603.1_g000004 Rmu_ssc0000351.1_g000004
rosa_roxburghii	Rroxscaffold_5G00344630 Rroxscaffold_5G00369080
rosa_rugosa	Rorug04G0018300
rosa_samantha	Rh2BG663500 Rh4CG294800 Rh4DG277000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AciI	CCGC	2 cut(s)	308, 318
AcoI	YGGCCR	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	449, 452
AsuHPI	GGTGA	2 cut(s)	158, 191
AsuII	TTCGAA	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	436, 464
BceAI	ACGGC	2 cut(s)	381, 409
BcoDI	GTCTC	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	450
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	3 cut(s)	309, 450, 453
BlsI	GCNGC	3 cut(s)	310, 451, 454
BmsI	GCATC	4 cut(s)	193, 206, 295, 313
Bpu10I	CCTNAGC	1 cut(s)	312
Bpu14I	TTCGAA	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	133
BseX3I	CGGCCG	1 cut(s)	394
BseXI	GCAGC	2 cut(s)	436, 464
Bsh1285I	CGRYCG	2 cut(s)	223, 397
BshFI	GGCC	1 cut(s)	396
BsiEI	CGRYCG	2 cut(s)	223, 397
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	396
Bsp119I	TTCGAA	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	61, 216
BspACI	CCGC	2 cut(s)	308, 318
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	345
BspMAI	CTGCAG	1 cut(s)	454
BspT104I	TTCGAA	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	2 cut(s)	61, 216
Bst6I	CTCTTC	1 cut(s)	408
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	4 cut(s)	119, 227, 312, 411
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	2 cut(s)	64, 219
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	61, 216
BstMCI	CGRYCG	2 cut(s)	223, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 305, 332, 446
BstNSI	RCATGY	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	436, 464
BstZI	CGGCCG	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	328
CciI	TCATGA	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	326
CseI	GACGC	1 cut(s)	346
CviAII	CATG	5 cut(s)	19, 78, 208, 346, 375
CviJI	RGCY	7 cut(s)	97, 226, 299, 311, 368, 396, 449
CviKI_1	RGCY	7 cut(s)	97, 226, 299, 311, 368, 396, 449
DdeI	CTNAG	4 cut(s)	119, 227, 312, 411
DpnI	GATC	2 cut(s)	63, 218
DpnII	GATC	2 cut(s)	61, 216
EaeI	YGGCCR	1 cut(s)	394
EagI	CGGCCG	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
EciI	GGCGGA	1 cut(s)	333
EclXI	CGGCCG	1 cut(s)	394
Eco52I	CGGCCG	1 cut(s)	394
FaeI	CATG	5 cut(s)	22, 81, 211, 349, 378
FaiI	YATR	8 cut(s)	20, 79, 170, 209, 267, 290, 347, 376
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	5 cut(s)	18, 77, 207, 345, 374
Fnu4HI	GCNGC	3 cut(s)	309, 450, 453
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	3 cut(s)	309, 450, 453
GluI	GCNGC	3 cut(s)	309, 450, 453
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	1 cut(s)	346
Hin1II	CATG	5 cut(s)	22, 81, 211, 349, 378
HinfI	GANTC	2 cut(s)	49, 371
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	2 cut(s)	158, 191
Hpy188I	TCNGA	3 cut(s)	13, 122, 202
Hpy188III	TCNNGA	3 cut(s)	257, 281, 346
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	1 cut(s)	134
HpyCH4IV	ACGT	2 cut(s)	354, 382
HpyCH4V	TGCA	4 cut(s)	57, 81, 211, 452
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 305, 332, 446
HpyF3I	CTNAG	4 cut(s)	119, 227, 312, 411
HpySE526I	ACGT	2 cut(s)	354, 382
Hsp92II	CATG	5 cut(s)	22, 81, 211, 349, 378
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	61, 216
LpnPI	CCDG	2 cut(s)	255, 340
Lsp1109I	GCAGC	2 cut(s)	436, 464
LweI	GCATC	4 cut(s)	193, 206, 295, 313
MaeII	ACGT	2 cut(s)	354, 382
MalI	GATC	2 cut(s)	63, 218
MboI	GATC	2 cut(s)	61, 216
MboII	GAAGA	1 cut(s)	395
MluCI	AATT	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	3 cut(s)	19, 113, 295
MroNI	GCCGGC	1 cut(s)	326
MseI	TTAA	2 cut(s)	192, 472
MspI	CCGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	4 cut(s)	203, 305, 332, 446
NaeI	GCCGGC	1 cut(s)	328
NdeII	GATC	2 cut(s)	61, 216
NgoMIV	GCCGGC	1 cut(s)	326
NlaIII	CATG	5 cut(s)	22, 81, 211, 349, 378
NmeAIII	GCCGAG	1 cut(s)	325
NspI	RCATGY	1 cut(s)	81
NspV	TTCGAA	1 cut(s)	43
PagI	TCATGA	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	310, 451, 454
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	454
SaqAI	TTAA	2 cut(s)	192, 472
SatI	GCNGC	3 cut(s)	309, 450, 453
Sau3AI	GATC	2 cut(s)	61, 216
SchI	GAGTC	1 cut(s)	58
SetI	ASST	5 cut(s)	11, 38, 244, 357, 385
SfaNI	GCATC	4 cut(s)	193, 206, 295, 313
SfcI	CTRYAG	1 cut(s)	450
SfuI	TTCGAA	1 cut(s)	43
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	2 cut(s)	308, 318
TaiI	ACGT	2 cut(s)	357, 385
TaqI	TCGA	4 cut(s)	43, 186, 256, 280
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	1 cut(s)	262
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	192, 472
Tru9I	TTAA	2 cut(s)	192, 472
TseI	GCWGC	2 cut(s)	449, 452
TspDTI	ATGAA	2 cut(s)	362, 363
TspGWI	ACGGA	1 cut(s)	103
XceI	RCATGY	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.