Rmu_sc0000603.1_g000004

Cell wall vacuolar inhibitor of fructosidase 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000603.1
Physical Location & Seq
Forward (+)
9030 .. 9449
420 bp
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UTR
Exon/CDS
Intron
Rmu_sc0000603.1_g000004.1.cds

Sequence Viewer

Length: 420 bp
atgatcttgttgacgacacatgcaaacagacaccacaccccgacctctgtgtctccattctcaatgcagaccggcggactgaagggtctgatgcatgtggatgggttagccaccataatggttggtgaagttgagcctaaggcatctgatgccattgccaaaatcaaacagctacttagccagagccttgcagacaaaccattaagcgattgtcaggaatattatgttgtagttgttcgagataatgtgccccaagccactgaagcaattggtgcaagtgatggtggcaaggcggagcaactcttgaatgatgttgtgggtaaggctgattcatgcgaaaaggagtttaagagctctcctctgaacaatgccgtaaaagttgtttcatttgtggcttcaacaatatcgagattaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

14.77

Weight (kDa)

6.05

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018835)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 49, 84
AciI CCGC 2 cut(s) 75, 293
AcuI CTGAAG 2 cut(s) 101, 282
AgsI TTSAA 2 cut(s) 307, 399
AluBI AGCT 2 cut(s) 172, 354
AluI AGCT 2 cut(s) 172, 354
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 137
AxyI CCTNAGG 1 cut(s) 138
BaeGI GKGCMC 1 cut(s) 252
BanII GRGCYC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 356
BccI CCATC 2 cut(s) 95, 275
BceAI ACGGC 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 57
BmsI GCATC 3 cut(s) 81, 139, 152
BplI GAGNNNNNCTC 2 cut(s) 343, 375
Bse118I RCCGGY 1 cut(s) 71
Bse21I CCTNAGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 153
BseGI GGATG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 356
BsiSI CCGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 252, 356
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 75, 293
BsrDI GCAATG 1 cut(s) 153
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 1 cut(s) 3
BstAPI GCANNNNNTGC 2 cut(s) 149, 272
BstDEI CTNAG 2 cut(s) 138, 176
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 149, 263, 272
BstNSI RCATGY 2 cut(s) 23, 98
BstSLI GKGCMC 1 cut(s) 252
BstXI CCANNNNNNTGG 1 cut(s) 118
Bsu36I CCTNAGG 1 cut(s) 138
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 71
CviAII CATG 3 cut(s) 20, 95, 333
CviJI RGCY 9 cut(s) 110, 136, 172, 180, 186, 257, 326, 354, 395
CviKI_1 RGCY 9 cut(s) 110, 136, 172, 180, 186, 257, 326, 354, 395
DdeI CTNAG 2 cut(s) 138, 176
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DrdI GACNNNNNNGTC 2 cut(s) 49, 84
DseDI GACNNNNNNGTC 2 cut(s) 49, 84
EciI GGCGGA 2 cut(s) 90, 308
Ecl136II GAGCTC 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 356
Eco53kI GAGCTC 1 cut(s) 354
Eco57I CTGAAG 2 cut(s) 101, 282
Eco81I CCTNAGG 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 356
FaeI CATG 3 cut(s) 23, 98, 336
FaiI YATR 5 cut(s) 21, 96, 116, 225, 334
FatI CATG 3 cut(s) 19, 94, 332
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 356
HapII CCGG 1 cut(s) 72
Hin1II CATG 3 cut(s) 23, 98, 336
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 329
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 3 cut(s) 90, 148, 363
Hpy188III TCNNGA 4 cut(s) 215, 239, 304, 408
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 5 cut(s) 23, 67, 94, 191, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 263, 272
HpyF3I CTNAG 2 cut(s) 138, 176
Hsp92II CATG 3 cut(s) 23, 98, 336
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 3 cut(s) 85, 194, 200
LweI GCATC 3 cut(s) 81, 139, 152
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MfeI CAATTG 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 252, 356
MluCI AATT 1 cut(s) 267
MnlI CCTC 2 cut(s) 55, 369
Mph1103I ATGCAT 1 cut(s) 96
MseI TTAA 3 cut(s) 203, 348, 413
MslI CAYNNNNRTG 2 cut(s) 99, 116
MspI CCGG 1 cut(s) 72
MunI CAATTG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 149, 263, 272
NdeII GATC 1 cut(s) 3
NlaIII CATG 3 cut(s) 23, 98, 336
NsiI ATGCAT 1 cut(s) 96
NspI RCATGY 2 cut(s) 23, 98
PfeI GAWTC 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 356
RseI CAYNNNNRTG 2 cut(s) 99, 116
SacI GAGCTC 1 cut(s) 356
SaqAI TTAA 3 cut(s) 203, 348, 413
Sau3AI GATC 1 cut(s) 3
SduI GDGCHC 2 cut(s) 252, 356
SetI ASST 3 cut(s) 47, 174, 356
SfaNI GCATC 3 cut(s) 81, 139, 152
SmiMI CAYNNNNRTG 2 cut(s) 99, 116
Sse9I AATT 1 cut(s) 267
SsiI CCGC 2 cut(s) 75, 293
SspI AATATT 1 cut(s) 221
SstI GAGCTC 1 cut(s) 356
TaqI TCGA 2 cut(s) 238, 407
TasI AATT 1 cut(s) 267
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 3 cut(s) 203, 348, 413
Tru9I TTAA 3 cut(s) 203, 348, 413
TscAI CASTG 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 321, 375
TspRI CASTG 1 cut(s) 265
XceI RCATGY 2 cut(s) 23, 98
Zsp2I ATGCAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.