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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G08630 AT4G08630 AT5G13260 |
| fragaria_vesca | FvH4_4g22850 FvH4_4g22850 FvH4_4g22850 FvH4_4g22850 FvH4_4g22850 |
| malus_domestica | MD13G1129100.v1.1 MD16G1129000.v1.1 |
| prunus_persica | Prupe.1G217300_v2.0.a1 |
| pyrus_communis | pycom13g11210 pycom16g10940 |
| rosa_chinensis | RchiOBHm_Chr4g0429091 |
| rosa_laevigata | RLG00000007098 |
| rosa_multiflora | Rmu_sc0000846.1_g000019 Rmu_sc0008629.1_g000025 |
| rosa_roxburghii | Rroxscaffold_5G00370720 |
| rosa_rugosa | Rorug04G0233000 |
| rosa_samantha | Rh4AG288700 Rh4BG294800 Rh4CG310300 Rh4DG291800 |
| rosa_wichuraiana | Rw4G025020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 475 |
| Acc36I | ACCTGC | 1 cut(s) | 181 |
| AccB1I | GGYRCC | 1 cut(s) | 445 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 839 |
| AccBSI | CCGCTC | 1 cut(s) | 176 |
| AccI | GTMKAC | 1 cut(s) | 33 |
| AccII | CGCG | 5 cut(s) | 107, 109, 188, 362, 1636 |
| AclWI | GGATC | 3 cut(s) | 948, 1175, 1376 |
| AcoI | YGGCCR | 1 cut(s) | 97 |
| AcuI | CTGAAG | 6 cut(s) | 707, 894, 957, 1028, 1310, 1446 |
| AdeI | CACNNNGTG | 1 cut(s) | 596 |
| AfaI | GTAC | 2 cut(s) | 427, 1085 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 95, 190, 510, 690, 839 |
| AgeI | ACCGGT | 1 cut(s) | 212 |
| AgsI | TTSAA | 6 cut(s) | 701, 740, 1047, 1216, 1273, 1441 |
| AjnI | CCWGG | 1 cut(s) | 301 |
| AluBI | AGCT | 8 cut(s) | 386, 646, 709, 761, 905, 929, 1106, 1279 |
| AluI | AGCT | 8 cut(s) | 386, 646, 709, 761, 905, 929, 1106, 1279 |
| Alw21I | GWGCWC | 2 cut(s) | 265, 1617 |
| Alw26I | GTCTC | 1 cut(s) | 90 |
| AlwI | GGATC | 3 cut(s) | 948, 1175, 1376 |
| AoxI | GGCC | 4 cut(s) | 97, 168, 198, 855 |
| ApeKI | GCWGC | 4 cut(s) | 431, 731, 806, 902 |
| AsiGI | ACCGGT | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 337, 527, 1002, 1431, 1515 |
| AspLEI | GCGC | 6 cut(s) | 109, 111, 183, 190, 308, 1638 |
| AspS9I | GGNCC | 4 cut(s) | 4, 18, 468, 493 |
| AsuC2I | CCSGG | 2 cut(s) | 29, 328 |
| AsuHPI | GGTGA | 3 cut(s) | 227, 1184, 1365 |
| AvaII | GGWCC | 4 cut(s) | 4, 18, 468, 493 |
| BalI | TGGCCA | 1 cut(s) | 99 |
| BanI | GGYRCC | 1 cut(s) | 445 |
| BanII | GRGCYC | 1 cut(s) | 421 |
| BbsI | GAAGAC | 1 cut(s) | 1089 |
| Bbv12I | GWGCWC | 2 cut(s) | 265, 1617 |
| BbvI | GCAGC | 4 cut(s) | 443, 718, 793, 914 |
| BccI | CCATC | 4 cut(s) | 985, 1258, 1384, 1558 |
| BceAI | ACGGC | 2 cut(s) | 256, 302 |
| BciT130I | CCWGG | 1 cut(s) | 303 |
| BciVI | GTATCC | 1 cut(s) | 1087 |
| BcnI | CCSGG | 2 cut(s) | 29, 328 |
| BcoDI | GTCTC | 1 cut(s) | 90 |
| BfaI | CTAG | 3 cut(s) | 345, 510, 617 |
| BfmI | CTRYAG | 1 cut(s) | 256 |
| BfoI | RGCGCY | 2 cut(s) | 184, 309 |
| BfuAI | ACCTGC | 1 cut(s) | 181 |
| BfuI | GTATCC | 1 cut(s) | 1087 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 167 |
| BglII | AGATCT | 1 cut(s) | 571 |
| BlpI | GCTNAGC | 2 cut(s) | 177, 309 |
| Bme1390I | CCNGG | 3 cut(s) | 29, 303, 328 |
| Bme18I | GGWCC | 4 cut(s) | 4, 18, 468, 493 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 18, 468, 493 |
| BmiI | GGNNCC | 2 cut(s) | 447, 495 |
| BmrFI | CCNGG | 3 cut(s) | 29, 303, 328 |
| BmrI | ACTGGG | 2 cut(s) | 1042, 1613 |
| BmsI | GCATC | 3 cut(s) | 138, 869, 1552 |
| BmuI | ACTGGG | 2 cut(s) | 1042, 1613 |
| BpiI | GAAGAC | 1 cut(s) | 1089 |
| BpmI | CTGGAG | 2 cut(s) | 268, 1248 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1102 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 177, 309 |
| BpuEI | CTTGAG | 1 cut(s) | 484 |
| BpuMI | CCSGG | 2 cut(s) | 29, 328 |
| BsaAI | YACGTR | 2 cut(s) | 578, 1028 |
| BsaBI | GATNNNNATC | 2 cut(s) | 532, 1179 |
| BsaJI | CCNNGG | 3 cut(s) | 165, 1149, 1662 |
| BsaWI | WCCGGW | 3 cut(s) | 6, 88, 212 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 95, 125 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 95, 190, 510, 690, 839 |
| Bse118I | RCCGGY | 1 cut(s) | 212 |
| Bse1I | ACTGG | 3 cut(s) | 1037, 1231, 1608 |
| Bse3DI | GCAATG | 2 cut(s) | 87, 1500 |
| Bse8I | GATNNNNATC | 2 cut(s) | 532, 1179 |
| BseBI | CCWGG | 1 cut(s) | 303 |
| BseDI | CCNNGG | 3 cut(s) | 165, 1149, 1662 |
| BseGI | GGATG | 2 cut(s) | 71, 1376 |
| BseJI | GATNNNNATC | 2 cut(s) | 532, 1179 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 95, 190, 510, 690, 839 |
| BseMI | GCAATG | 2 cut(s) | 87, 1500 |
| BseMII | CTCAG | 3 cut(s) | 164, 191, 1609 |
| BseNI | ACTGG | 3 cut(s) | 1037, 1231, 1608 |
| BsePI | GCGCGC | 1 cut(s) | 107 |
| BseRI | GAGGAG | 6 cut(s) | 103, 106, 1098, 1313, 1433, 1508 |
| BseXI | GCAGC | 4 cut(s) | 443, 718, 793, 914 |
| BsgI | GTGCAG | 3 cut(s) | 573, 834, 1083 |
| Bsh1236I | CGCG | 5 cut(s) | 107, 109, 188, 362, 1636 |
| BshFI | GGCC | 4 cut(s) | 99, 170, 200, 857 |
| BshNI | GGYRCC | 1 cut(s) | 445 |
| BshTI | ACCGGT | 1 cut(s) | 212 |
| BsiHKAI | GWGCWC | 2 cut(s) | 265, 1617 |
| BsiSI | CCGG | 8 cut(s) | 7, 16, 29, 89, 213, 327, 649, 1137 |
| BslFI | GGGAC | 1 cut(s) | 305 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 95, 190, 510, 690, 839 |
| BsmAI | GTCTC | 1 cut(s) | 90 |
| BsmFI | GGGAC | 1 cut(s) | 305 |
| BsnI | GGCC | 4 cut(s) | 99, 170, 200, 857 |
| Bsp1286I | GDGCHC | 3 cut(s) | 265, 421, 1617 |
| Bsp143I | GATC | 7 cut(s) | 241, 347, 571, 953, 1180, 1334, 1381 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 177, 309 |
| BspANI | GGCC | 4 cut(s) | 99, 170, 200, 857 |
| BspCNI | CTCAG | 3 cut(s) | 163, 190, 1608 |
| BspFNI | CGCG | 5 cut(s) | 107, 109, 188, 362, 1636 |
| BspLI | GGNNCC | 2 cut(s) | 447, 495 |
| BspMI | ACCTGC | 1 cut(s) | 181 |
| BspPI | GGATC | 3 cut(s) | 948, 1175, 1376 |
| BspQI | GCTCTTC | 2 cut(s) | 426, 1465 |
| BspT107I | GGYRCC | 1 cut(s) | 445 |
| BsrBI | CCGCTC | 1 cut(s) | 176 |
| BsrDI | GCAATG | 2 cut(s) | 87, 1500 |
| BsrFI | RCCGGY | 1 cut(s) | 212 |
| BsrI | ACTGG | 3 cut(s) | 1037, 1231, 1608 |
| BssAI | RCCGGY | 1 cut(s) | 212 |
| BssECI | CCNNGG | 3 cut(s) | 165, 1149, 1662 |
| BssHII | GCGCGC | 1 cut(s) | 107 |
| BssMI | GATC | 7 cut(s) | 241, 347, 571, 953, 1180, 1334, 1381 |
| BssT1I | CCWWGG | 2 cut(s) | 165, 1149 |
| Bst2UI | CCWGG | 1 cut(s) | 303 |
| Bst4CI | ACNGT | 5 cut(s) | 260, 299, 489, 1055, 1666 |
| Bst6I | CTCTTC | 6 cut(s) | 426, 615, 654, 870, 1465, 1663 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1070 |
| BstBAI | YACGTR | 2 cut(s) | 578, 1028 |
| BstC8I | GCNNGC | 7 cut(s) | 109, 124, 315, 1254, 1281, 1314, 1545 |
| BstDEI | CTNAG | 5 cut(s) | 150, 177, 309, 1102, 1595 |
| BstDSI | CCRYGG | 1 cut(s) | 1662 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 188 |
| BstF5I | GGATG | 2 cut(s) | 71, 1376 |
| BstFNI | CGCG | 5 cut(s) | 107, 109, 188, 362, 1636 |
| BstH2I | RGCGCY | 2 cut(s) | 184, 309 |
| BstHHI | GCGC | 6 cut(s) | 109, 111, 183, 190, 308, 1638 |
| BstKTI | GATC | 7 cut(s) | 244, 350, 574, 956, 1183, 1337, 1384 |
| BstMAI | GTCTC | 1 cut(s) | 90 |
| BstMBI | GATC | 7 cut(s) | 241, 347, 571, 953, 1180, 1334, 1381 |
| BstNI | CCWGG | 1 cut(s) | 303 |
| BstNSI | RCATGY | 1 cut(s) | 1547 |
| BstSCI | CCNGG | 3 cut(s) | 27, 301, 326 |
| BstSFI | CTRYAG | 1 cut(s) | 256 |
| BstUI | CGCG | 5 cut(s) | 107, 109, 188, 362, 1636 |
| BstV1I | GCAGC | 4 cut(s) | 443, 718, 793, 914 |
| BstV2I | GAAGAC | 1 cut(s) | 1089 |
| BstX2I | RGATCY | 1 cut(s) | 571 |
| BstYI | RGATCY | 1 cut(s) | 571 |
| BsuI | GTATCC | 1 cut(s) | 1087 |
| BsuRI | GGCC | 4 cut(s) | 99, 170, 200, 857 |
| BtgI | CCRYGG | 1 cut(s) | 1662 |
| BtgZI | GCGATG | 1 cut(s) | 1027 |
| BtsCI | GGATG | 2 cut(s) | 71, 1376 |
| BtsI | GCAGTG | 2 cut(s) | 590, 1543 |
| BtsIMutI | CAGTG | 3 cut(s) | 265, 590, 1543 |
| BveI | ACCTGC | 1 cut(s) | 181 |
| Cac8I | GCNNGC | 7 cut(s) | 109, 124, 315, 1254, 1281, 1314, 1545 |
| CfoI | GCGC | 6 cut(s) | 109, 111, 183, 190, 308, 1638 |
| Cfr10I | RCCGGY | 1 cut(s) | 212 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 18, 468, 493 |
| CpoI | CGGWCCG | 1 cut(s) | 18 |
| Csp6I | GTAC | 2 cut(s) | 426, 1084 |
| CspAI | ACCGGT | 1 cut(s) | 212 |
| CspI | CGGWCCG | 1 cut(s) | 18 |
| CviAII | CATG | 7 cut(s) | 196, 653, 923, 958, 1161, 1544, 1559 |
| CviQI | GTAC | 2 cut(s) | 426, 1084 |
| DdeI | CTNAG | 5 cut(s) | 150, 177, 309, 1102, 1595 |
| DpnI | GATC | 7 cut(s) | 243, 349, 573, 955, 1182, 1336, 1383 |
| DpnII | GATC | 7 cut(s) | 241, 347, 571, 953, 1180, 1334, 1381 |
| DraI | TTTAAA | 1 cut(s) | 822 |
| DraIII | CACNNNGTG | 1 cut(s) | 596 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 475 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 475 |
| EaeI | YGGCCR | 1 cut(s) | 97 |
| Eam1104I | CTCTTC | 6 cut(s) | 426, 615, 654, 870, 1465, 1663 |
| EarI | CTCTTC | 6 cut(s) | 426, 615, 654, 870, 1465, 1663 |
| EciI | GGCGGA | 2 cut(s) | 109, 255 |
| Eco130I | CCWWGG | 2 cut(s) | 165, 1149 |
| Eco24I | GRGCYC | 1 cut(s) | 421 |
| Eco47I | GGWCC | 4 cut(s) | 4, 18, 468, 493 |
| Eco57I | CTGAAG | 6 cut(s) | 707, 894, 957, 1028, 1310, 1446 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 188 |
| EcoRII | CCWGG | 1 cut(s) | 301 |
| EcoT14I | CCWWGG | 2 cut(s) | 165, 1149 |
| EcoT38I | GRGCYC | 1 cut(s) | 421 |
| ErhI | CCWWGG | 2 cut(s) | 165, 1149 |
| FaeI | CATG | 7 cut(s) | 199, 656, 926, 961, 1164, 1547, 1562 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 750, 782 |
| FaqI | GGGAC | 1 cut(s) | 305 |
| FatI | CATG | 7 cut(s) | 195, 652, 922, 957, 1160, 1543, 1558 |
| FauI | CCCGC | 3 cut(s) | 85, 322, 367 |
| FblI | GTMKAC | 1 cut(s) | 33 |
| FokI | GGATG | 2 cut(s) | 58, 1363 |
| FriOI | GRGCYC | 1 cut(s) | 421 |
| FspBI | CTAG | 3 cut(s) | 345, 510, 617 |
| GlaI | GCGC | 6 cut(s) | 108, 110, 182, 189, 307, 1637 |
| GsuI | CTGGAG | 2 cut(s) | 268, 1248 |
| HaeII | RGCGCY | 2 cut(s) | 184, 309 |
| HaeIII | GGCC | 4 cut(s) | 99, 170, 200, 857 |
| HapII | CCGG | 8 cut(s) | 7, 16, 29, 89, 213, 327, 649, 1137 |
| HhaI | GCGC | 6 cut(s) | 109, 111, 183, 190, 308, 1638 |
| Hin1II | CATG | 7 cut(s) | 199, 656, 926, 961, 1164, 1547, 1562 |
| Hin6I | GCGC | 6 cut(s) | 107, 109, 181, 188, 306, 1636 |
| HinP1I | GCGC | 6 cut(s) | 107, 109, 181, 188, 306, 1636 |
| HpaII | CCGG | 8 cut(s) | 7, 16, 29, 89, 213, 327, 649, 1137 |
| HphI | GGTGA | 3 cut(s) | 227, 1184, 1365 |
| Hpy166II | GTNNAC | 1 cut(s) | 34 |
| Hpy188I | TCNGA | 9 cut(s) | 153, 372, 538, 874, 937, 1008, 1363, 1381, 1426 |
| Hpy8I | GTNNAC | 1 cut(s) | 34 |
| Hpy99I | CGWCG | 5 cut(s) | 227, 230, 242, 409, 1335 |
| HpyCH4III | ACNGT | 5 cut(s) | 260, 299, 489, 1055, 1666 |
| HpyCH4IV | ACGT | 4 cut(s) | 404, 476, 577, 1027 |
| HpyCH4V | TGCA | 9 cut(s) | 590, 716, 851, 902, 1064, 1073, 1256, 1316, 1547 |
| HpyF3I | CTNAG | 5 cut(s) | 150, 177, 309, 1102, 1595 |
| HpySE526I | ACGT | 4 cut(s) | 404, 476, 577, 1027 |
| Hsp92II | CATG | 7 cut(s) | 199, 656, 926, 961, 1164, 1547, 1562 |
| HspAI | GCGC | 6 cut(s) | 107, 109, 181, 188, 306, 1636 |
| Kzo9I | GATC | 7 cut(s) | 241, 347, 571, 953, 1180, 1334, 1381 |
| LguI | GCTCTTC | 2 cut(s) | 426, 1465 |
| LmnI | GCTCC | 6 cut(s) | 116, 268, 651, 926, 1111, 1276 |
| Lsp1109I | GCAGC | 4 cut(s) | 443, 718, 793, 914 |
| LweI | GCATC | 3 cut(s) | 138, 869, 1552 |
| MaeI | CTAG | 3 cut(s) | 345, 510, 617 |
| MaeII | ACGT | 4 cut(s) | 404, 476, 577, 1027 |
| MaeIII | GTNAC | 1 cut(s) | 1028 |
| MalI | GATC | 7 cut(s) | 243, 349, 573, 955, 1182, 1336, 1383 |
| MbiI | CCGCTC | 1 cut(s) | 176 |
| MboI | GATC | 7 cut(s) | 241, 347, 571, 953, 1180, 1334, 1381 |
| MfeI | CAATTG | 2 cut(s) | 1401, 1644 |
| MflI | RGATCY | 1 cut(s) | 571 |
| MhlI | GDGCHC | 3 cut(s) | 265, 421, 1617 |
| MlsI | TGGCCA | 1 cut(s) | 99 |
| MluCI | AATT | 2 cut(s) | 1401, 1644 |
| MluNI | TGGCCA | 1 cut(s) | 99 |
| MlyI | GAGTC | 7 cut(s) | 4, 50, 955, 973, 1420, 1430, 1649 |
| MmeI | TCCRAC | 2 cut(s) | 159, 471 |
| Mox20I | TGGCCA | 1 cut(s) | 99 |
| MroXI | GAANNNNTTC | 5 cut(s) | 337, 527, 1002, 1431, 1515 |
| MscI | TGGCCA | 1 cut(s) | 99 |
| MseI | TTAA | 5 cut(s) | 770, 821, 942, 1223, 1530 |
| Msp20I | TGGCCA | 1 cut(s) | 99 |
| MspA1I | CMGCKG | 2 cut(s) | 126, 709 |
| MspI | CCGG | 8 cut(s) | 7, 16, 29, 89, 213, 327, 649, 1137 |
| MspR9I | CCNGG | 3 cut(s) | 29, 303, 328 |
| MunI | CAATTG | 2 cut(s) | 1401, 1644 |
| MvaI | CCWGG | 1 cut(s) | 303 |
| MvnI | CGCG | 5 cut(s) | 107, 109, 188, 362, 1636 |
| NciI | CCSGG | 2 cut(s) | 29, 328 |
| NdeII | GATC | 7 cut(s) | 241, 347, 571, 953, 1180, 1334, 1381 |
| NlaIII | CATG | 7 cut(s) | 199, 656, 926, 961, 1164, 1547, 1562 |
| NlaIV | GGNNCC | 2 cut(s) | 447, 495 |
| NmeAIII | GCCGAG | 1 cut(s) | 1327 |
| NspI | RCATGY | 1 cut(s) | 1547 |
| PaeI | GCATGC | 1 cut(s) | 1547 |
| PauI | GCGCGC | 1 cut(s) | 107 |
| PciSI | GCTCTTC | 2 cut(s) | 426, 1465 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 234 |
| PdmI | GAANNNNTTC | 5 cut(s) | 337, 527, 1002, 1431, 1515 |
| PfeI | GAWTC | 5 cut(s) | 528, 563, 932, 1157, 1631 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 839 |
| PfoI | TCCNGGA | 1 cut(s) | 326 |
| PinAI | ACCGGT | 1 cut(s) | 212 |
| PleI | GAGTC | 7 cut(s) | 4, 50, 955, 973, 1419, 1429, 1649 |
| PpsI | GAGTC | 7 cut(s) | 4, 50, 955, 973, 1419, 1429, 1649 |
| Ppu21I | YACGTR | 2 cut(s) | 578, 1028 |
| Psp6I | CCWGG | 1 cut(s) | 301 |
| PspGI | CCWGG | 1 cut(s) | 301 |
| PspN4I | GGNNCC | 2 cut(s) | 447, 495 |
| PspPI | GGNCC | 4 cut(s) | 4, 18, 468, 493 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 325, 357 |
| PsuI | RGATCY | 1 cut(s) | 571 |
| PteI | GCGCGC | 1 cut(s) | 107 |
| PvuII | CAGCTG | 1 cut(s) | 709 |
| RsaI | GTAC | 2 cut(s) | 427, 1085 |
| RsaNI | GTAC | 2 cut(s) | 426, 1084 |
| Rsr2I | CGGWCCG | 1 cut(s) | 18 |
| RsrII | CGGWCCG | 1 cut(s) | 18 |
| SapI | GCTCTTC | 2 cut(s) | 426, 1465 |
| SaqAI | TTAA | 5 cut(s) | 770, 821, 942, 1223, 1530 |
| Sau3AI | GATC | 7 cut(s) | 241, 347, 571, 953, 1180, 1334, 1381 |
| Sau96I | GGNCC | 4 cut(s) | 4, 18, 468, 493 |
| SchI | GAGTC | 7 cut(s) | 4, 50, 955, 973, 1420, 1430, 1649 |
| ScrFI | CCNGG | 3 cut(s) | 29, 303, 328 |
| SduI | GDGCHC | 3 cut(s) | 265, 421, 1617 |
| SfaNI | GCATC | 3 cut(s) | 138, 869, 1552 |
| SfcI | CTRYAG | 1 cut(s) | 256 |
| SgrAI | CRCCGGYG | 1 cut(s) | 212 |
| SinI | GGWCC | 4 cut(s) | 4, 18, 468, 493 |
| SmlI | CTYRAG | 1 cut(s) | 463 |
| SmoI | CTYRAG | 1 cut(s) | 463 |
| SphI | GCATGC | 1 cut(s) | 1547 |
| Sse9I | AATT | 2 cut(s) | 1401, 1644 |
| SspI | AATATT | 1 cut(s) | 1306 |
| SspMI | CTAG | 3 cut(s) | 345, 510, 617 |
| StyD4I | CCNGG | 3 cut(s) | 27, 301, 326 |
| StyI | CCWWGG | 2 cut(s) | 165, 1149 |
| TaaI | ACNGT | 5 cut(s) | 260, 299, 489, 1055, 1666 |
| TaiI | ACGT | 4 cut(s) | 407, 479, 580, 1030 |
| TaqI | TCGA | 3 cut(s) | 454, 952, 1296 |
| TaqII | GACCGA | 2 cut(s) | 35, 858 |
| TasI | AATT | 2 cut(s) | 1401, 1644 |
| TauI | GCSGC | 7 cut(s) | 129, 164, 173, 176, 271, 860, 1676 |
| TfiI | GAWTC | 5 cut(s) | 528, 563, 932, 1157, 1631 |
| Tru1I | TTAA | 5 cut(s) | 770, 821, 942, 1223, 1530 |
| Tru9I | TTAA | 5 cut(s) | 770, 821, 942, 1223, 1530 |
| TscAI | CASTG | 3 cut(s) | 265, 597, 1543 |
| TseI | GCWGC | 4 cut(s) | 431, 731, 806, 902 |
| TspDTI | ATGAA | 4 cut(s) | 615, 669, 1382, 1668 |
| TspGWI | ACGGA | 1 cut(s) | 429 |
| TspRI | CASTG | 3 cut(s) | 265, 597, 1543 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 839 |
| VpaK11BI | GGWCC | 4 cut(s) | 4, 18, 468, 493 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 188 |
| XceI | RCATGY | 1 cut(s) | 1547 |
| XmiI | GTMKAC | 1 cut(s) | 33 |
| XmnI | GAANNNNTTC | 5 cut(s) | 337, 527, 1002, 1431, 1515 |
| XspI | CTAG | 3 cut(s) | 345, 510, 617 |