Rh4AG288700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
60243997 .. 60249154
5158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG288700.1

Sequence Viewer

Length: 1383 bp
ATGGACCGGAGTCGACGGACCGATAGCCCGGTCTACACTCGCCAATGGACCAGCGAGTCCGGAGGAGCCACATCTCCAGCAATGTCTCCGGTGCGTGGCCACCACGCGCGGTCCTCCTCCGCCAGCGGAATCTCCAACATCAAACGCACTCAGAACTTCGCCGCCAAGGCCGCTGCTCAGCGCCTCGCTCAGGTAATGGCCTCGCAGAACACCGGAGATGACGACGATGACGATGAGGACGATCTCGGATTCCGGTACAGTGCTCCGCCACCATTCTCTCTGGTCAGGAATGCCAACAGTCCCGGTGCTAAACCTGCGGTTCCGTCCGGGAGGACTGGTTCTACTAGATCGGCTTCACCCGCGTTAGCTCGGAACTTAGAGGACACTGCATCAGTTCGCTCAACCTCAGCTGGAAGGGCTCTTCGTGCAGCACCTCCATTGGTGCCACCTCGAACAACATTGAAGACTGCAACATCTATTCCACCGCTGGACCCTCCTACCATTAATAGGAAAAAAGAAAACCGATTCGTATCCGAAACAGGAAATTATAAATCAAAAGATTCAGGAGATCAACGTGAGGCTTCTGCACTGCGTGATGAACTCGAAATGCTACAAGAAGAGCATGAAAATAATCTTGATAAGCTCCGGCACGAAGAAGAGAGATGTGAGGAAGTAGAAGCCAGAGTTAGGGAACTTGAAAAACAGGTTGCTGCTCTTGGAGAAGGTGTGTCATTGGAAGCTAAACTTTTAAGCAGGAAAGAAGCTGCCTTACGACAAAAAGAGGCTGCTCTCAAAGATTTAAAACAACCAAAGGGTGGAGTTGCTACACAGGCCGCATCTCTTCACTCTAAAGTGCAGAAAGCAAAAGAAGCAAATGCAGCTATTATGAAACAACTTAATGGAGCTGAATCTGAAGTTAAAGCCCTTCGATCCATGACTCAAAGAATGGTGTTGACTCAAAAAGAGATGGAAGAAGTAGTTCTGAAGCGATGTTGGTTAGCACGTAACTGGGGCTTGGCTGCAAAATATGGTATATGTGCAGATATTGCAGTATCCAAGTACGAACATTGGTCGTCCTTAGCTCCTCTTCCATTTGAGGTGGTTGTATCTGCCGGACAAAAAGCCAAGGAAGAATCCTGGGAAAAAGGTGATGATGATCCTGACAAGAGAAACAATCTTGTTCAGGACTTGAACGATTTAACTGGAGAAGGAAACATTGAGAGTATGCTTGCAGTTGAAATGGGATTAAAGGAGCTTGCTTTCCTGAAGGTTGAGGAGAATATTGTGCTTGCATTAGCCCAACAACGACGACCAAACTCTGCTCGGCTATCCTTCTCGGGTATGCATTGTACTTCTATTACCTGTTGGGTATGTGTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

460

Amino Acids

50.34

Weight (kDa)

8.11

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
AasI GACNNNNNNGTC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 322
AccB1I GGYRCC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 815
AccI GTMKAC 2 cut(s) 13, 33
AccII CGCG 3 cut(s) 107, 109, 362
AccIII TCCGGA 1 cut(s) 59
AclWI GGATC 2 cut(s) 924, 1151
AcoI YGGCCR 1 cut(s) 97
AcuI CTGAAG 3 cut(s) 933, 1004, 1286
AdeI CACNNNGTG 1 cut(s) 593
AfaI GTAC 3 cut(s) 257, 1061, 1351
AfiI CCNNNNNNNGG 5 cut(s) 95, 190, 507, 687, 815
AgsI TTSAA 4 cut(s) 463, 698, 1192, 1238
AjnI CCWGG 1 cut(s) 1136
AloI GAACNNNNNNTCC 2 cut(s) 322, 354
AluBI AGCT 9 cut(s) 368, 410, 643, 740, 764, 881, 905, 1082, 1255
AluI AGCT 9 cut(s) 368, 410, 643, 740, 764, 881, 905, 1082, 1255
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 2 cut(s) 924, 1151
Ama87I CYCGRG 1 cut(s) 1336
Aor13HI TCCGGA 1 cut(s) 59
AoxI GGCC 4 cut(s) 97, 168, 198, 831
ApeKI GCWGC 7 cut(s) 173, 428, 710, 764, 785, 878, 1019
AseI ATTAAT 1 cut(s) 504
Asp700I GAANNNNTTC 1 cut(s) 978
AspLEI GCGC 2 cut(s) 109, 183
AspS9I GGNCC 5 cut(s) 4, 18, 48, 111, 490
AsuC2I CCSGG 3 cut(s) 29, 303, 328
AsuHPI GGTGA 2 cut(s) 348, 1160
AvaI CYCGRG 1 cut(s) 1336
AvaII GGWCC 5 cut(s) 4, 18, 48, 111, 490
BalI TGGCCA 1 cut(s) 99
BanI GGYRCC 1 cut(s) 442
BanII GRGCYC 1 cut(s) 421
BarI GAAGNNNNNNTAC 2 cut(s) 753, 785
BbsI GAAGAC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 265
BbvCI CCTCAGC 1 cut(s) 406
BbvI GCAGC 7 cut(s) 160, 440, 697, 751, 772, 890, 1006
BccI CCATC 1 cut(s) 961
BciT130I CCWGG 1 cut(s) 1138
BciVI GTATCC 2 cut(s) 541, 1063
BcnI CCSGG 3 cut(s) 29, 303, 328
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 184
BfuAI ACCTGC 1 cut(s) 322
BfuI GTATCC 2 cut(s) 541, 1063
BglI GCCNNNNNGGC 1 cut(s) 167
BlpI GCTNAGC 1 cut(s) 177
Bme1390I CCNGG 4 cut(s) 29, 303, 328, 1138
Bme18I GGWCC 5 cut(s) 4, 18, 48, 111, 490
BmeT110I CYCGRG 1 cut(s) 1336
BmgT120I GGNCC 5 cut(s) 4, 18, 48, 111, 490
BmiI GGNNCC 4 cut(s) 67, 321, 444, 492
BmrFI CCNGG 4 cut(s) 29, 303, 328, 1138
BmrI ACTGGG 1 cut(s) 1018
BmsI GCATC 2 cut(s) 398, 845
BmuI ACTGGG 1 cut(s) 1018
BoxI GACNNNNGTC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 470
BpmI CTGGAG 2 cut(s) 60, 1224
Bpu10I CCTNAGC 3 cut(s) 189, 406, 1078
Bpu1102I GCTNAGC 1 cut(s) 177
BpuMI CCSGG 3 cut(s) 29, 303, 328
BsaAI YACGTR 1 cut(s) 1004
BsaBI GATNNNNATC 2 cut(s) 529, 1155
BsaJI CCNNGG 3 cut(s) 165, 1125, 1137
BsaWI WCCGGW 5 cut(s) 6, 59, 88, 212, 252
BsaXI ACNNNNNCTCC 4 cut(s) 322, 352, 711, 741
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 190, 507, 687, 815
Bse1I ACTGG 3 cut(s) 340, 1013, 1207
Bse3DI GCAATG 1 cut(s) 87
Bse8I GATNNNNATC 2 cut(s) 529, 1155
BseAI TCCGGA 1 cut(s) 59
BseBI CCWGG 1 cut(s) 1138
BseDI CCNNGG 3 cut(s) 165, 1125, 1137
BseJI GATNNNNATC 2 cut(s) 529, 1155
BseLI CCNNNNNNNGG 5 cut(s) 95, 190, 507, 687, 815
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 4 cut(s) 164, 191, 203, 420
BseNI ACTGG 3 cut(s) 340, 1013, 1207
BseRI GAGGAG 4 cut(s) 78, 106, 1074, 1289
BseXI GCAGC 7 cut(s) 160, 440, 697, 751, 772, 890, 1006
BsgI GTGCAG 4 cut(s) 447, 570, 875, 1059
Bsh1236I CGCG 3 cut(s) 107, 109, 362
BshFI GGCC 4 cut(s) 99, 170, 200, 833
BshNI GGYRCC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 1336
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 5 cut(s) 95, 190, 507, 687, 815
BsmAI GTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 285
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 4 cut(s) 99, 170, 200, 833
BsoBI CYCGRG 1 cut(s) 1336
Bsp1286I GDGCHC 2 cut(s) 265, 421
Bsp13I TCCGGA 1 cut(s) 59
Bsp143I GATC 5 cut(s) 241, 347, 568, 929, 1156
Bsp1720I GCTNAGC 1 cut(s) 177
BspANI GGCC 4 cut(s) 99, 170, 200, 833
BspCNI CTCAG 4 cut(s) 163, 190, 202, 419
BspEI TCCGGA 1 cut(s) 59
BspFNI CGCG 3 cut(s) 107, 109, 362
BspLI GGNNCC 4 cut(s) 67, 321, 444, 492
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 2 cut(s) 924, 1151
BspQI GCTCTTC 2 cut(s) 426, 612
BspT107I GGYRCC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 87
BsrI ACTGG 3 cut(s) 340, 1013, 1207
BssECI CCNNGG 3 cut(s) 165, 1125, 1137
BssMI GATC 5 cut(s) 241, 347, 568, 929, 1156
BssT1I CCWWGG 2 cut(s) 165, 1125
Bst2UI CCWGG 1 cut(s) 1138
Bst4CI ACNGT 2 cut(s) 260, 299
Bst6I CTCTTC 5 cut(s) 426, 612, 651, 846, 1092
BstAPI GCANNNNNTGC 1 cut(s) 1046
BstBAI YACGTR 1 cut(s) 1004
BstC8I GCNNGC 4 cut(s) 124, 1230, 1257, 1290
BstDEI CTNAG 6 cut(s) 150, 177, 189, 376, 406, 1078
BstENI CCTNNNNNAGG 1 cut(s) 188
BstFNI CGCG 3 cut(s) 107, 109, 362
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 2 cut(s) 109, 183
BstKTI GATC 5 cut(s) 244, 350, 571, 932, 1159
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 5 cut(s) 241, 347, 568, 929, 1156
BstNI CCWGG 1 cut(s) 1138
BstPAI GACNNNNGTC 1 cut(s) 9
BstSCI CCNGG 4 cut(s) 27, 301, 326, 1136
BstUI CGCG 3 cut(s) 107, 109, 362
BstV1I GCAGC 7 cut(s) 160, 440, 697, 751, 772, 890, 1006
BstV2I GAAGAC 1 cut(s) 470
BsuI GTATCC 2 cut(s) 541, 1063
BsuRI GGCC 4 cut(s) 99, 170, 200, 833
BtgZI GCGATG 1 cut(s) 1003
BtsI GCAGTG 2 cut(s) 384, 587
BtsIMutI CAGTG 3 cut(s) 265, 384, 587
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 4 cut(s) 124, 1230, 1257, 1290
CfoI GCGC 2 cut(s) 109, 183
Cfr13I GGNCC 5 cut(s) 4, 18, 48, 111, 490
CpoI CGGWCCG 1 cut(s) 18
Csp6I GTAC 3 cut(s) 256, 1060, 1350
CspI CGGWCCG 1 cut(s) 18
CviAII CATG 2 cut(s) 623, 934
CviQI GTAC 3 cut(s) 256, 1060, 1350
DdeI CTNAG 6 cut(s) 150, 177, 189, 376, 406, 1078
DpnI GATC 5 cut(s) 243, 349, 570, 931, 1158
DpnII GATC 5 cut(s) 241, 347, 568, 929, 1156
DraI TTTAAA 1 cut(s) 801
DraIII CACNNNGTG 1 cut(s) 593
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 5 cut(s) 426, 612, 651, 846, 1092
EarI CTCTTC 5 cut(s) 426, 612, 651, 846, 1092
EciI GGCGGA 2 cut(s) 109, 255
Eco130I CCWWGG 2 cut(s) 165, 1125
Eco24I GRGCYC 1 cut(s) 421
Eco47I GGWCC 5 cut(s) 4, 18, 48, 111, 490
Eco57I CTGAAG 3 cut(s) 933, 1004, 1286
Eco88I CYCGRG 1 cut(s) 1336
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 1136
EcoT14I CCWWGG 2 cut(s) 165, 1125
EcoT22I ATGCAT 1 cut(s) 1347
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 2 cut(s) 165, 1125
FaeI CATG 2 cut(s) 626, 937
FalI AAGNNNNNCTT 2 cut(s) 729, 761
FaqI GGGAC 1 cut(s) 285
FatI CATG 2 cut(s) 622, 933
FauI CCCGC 1 cut(s) 367
FblI GTMKAC 2 cut(s) 13, 33
FriOI GRGCYC 1 cut(s) 421
FspBI CTAG 1 cut(s) 345
GlaI GCGC 2 cut(s) 108, 182
GsuI CTGGAG 2 cut(s) 60, 1224
HaeII RGCGCY 1 cut(s) 184
HaeIII GGCC 4 cut(s) 99, 170, 200, 833
HhaI GCGC 2 cut(s) 109, 183
Hin1II CATG 2 cut(s) 626, 937
Hin6I GCGC 2 cut(s) 107, 181
HinP1I GCGC 2 cut(s) 107, 181
HincII GTYRAC 2 cut(s) 14, 954
HindII GTYRAC 2 cut(s) 14, 954
HphI GGTGA 2 cut(s) 348, 1160
Hpy166II GTNNAC 3 cut(s) 14, 34, 954
Hpy188I TCNGA 6 cut(s) 153, 248, 372, 535, 913, 984
Hpy188III TCNNGA 7 cut(s) 60, 286, 564, 635, 1160, 1184, 1264
Hpy8I GTNNAC 3 cut(s) 14, 34, 954
Hpy99I CGWCG 3 cut(s) 18, 227, 1311
HpyAV CCTTC 6 cut(s) 408, 716, 935, 1202, 1261, 1342
HpyCH4III ACNGT 2 cut(s) 260, 299
HpyCH4IV ACGT 2 cut(s) 574, 1003
HpyF3I CTNAG 6 cut(s) 150, 177, 189, 376, 406, 1078
HpySE526I ACGT 2 cut(s) 574, 1003
Hsp92II CATG 2 cut(s) 626, 937
HspAI GCGC 2 cut(s) 107, 181
Kpn2I TCCGGA 1 cut(s) 59
Kzo9I GATC 5 cut(s) 241, 347, 568, 929, 1156
LguI GCTCTTC 2 cut(s) 426, 612
LmnI GCTCC 6 cut(s) 65, 268, 648, 902, 1087, 1252
Lsp1109I GCAGC 7 cut(s) 160, 440, 697, 751, 772, 890, 1006
LweI GCATC 2 cut(s) 398, 845
MaeI CTAG 1 cut(s) 345
MaeII ACGT 2 cut(s) 574, 1003
MaeIII GTNAC 1 cut(s) 1004
MalI GATC 5 cut(s) 243, 349, 570, 931, 1158
MboI GATC 5 cut(s) 241, 347, 568, 929, 1156
MboII GAAGA 9 cut(s) 413, 475, 629, 665, 668, 833, 983, 1079, 1142
MhlI GDGCHC 2 cut(s) 265, 421
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 1 cut(s) 544
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 4 cut(s) 19, 65, 931, 949
MmeI TCCRAC 1 cut(s) 159
Mox20I TGGCCA 1 cut(s) 99
Mph1103I ATGCAT 1 cut(s) 1347
MroI TCCGGA 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 978
MscI TGGCCA 1 cut(s) 99
MseI TTAA 7 cut(s) 504, 749, 800, 897, 918, 1199, 1247
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 4 cut(s) 126, 173, 410, 487
MspR9I CCNGG 4 cut(s) 29, 303, 328, 1138
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 1 cut(s) 1138
MvnI CGCG 3 cut(s) 107, 109, 362
NciI CCSGG 3 cut(s) 29, 303, 328
NdeII GATC 5 cut(s) 241, 347, 568, 929, 1156
NlaIII CATG 2 cut(s) 626, 937
NlaIV GGNNCC 4 cut(s) 67, 321, 444, 492
NmeAIII GCCGAG 1 cut(s) 1303
NsiI ATGCAT 1 cut(s) 1347
PciSI GCTCTTC 2 cut(s) 426, 612
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 237
PctI GAATGC 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 978
PfeI GAWTC 6 cut(s) 129, 249, 525, 560, 908, 1133
PflMI CCANNNNNTGG 1 cut(s) 815
PfoI TCCNGGA 1 cut(s) 326
PleI GAGTC 4 cut(s) 18, 64, 931, 949
PpsI GAGTC 4 cut(s) 18, 64, 931, 949
Ppu21I YACGTR 1 cut(s) 1004
PshAI GACNNNNGTC 1 cut(s) 9
PshBI ATTAAT 1 cut(s) 504
PsiI TTATAA 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 1136
PspGI CCWGG 1 cut(s) 1136
PspN4I GGNNCC 4 cut(s) 67, 321, 444, 492
PspPI GGNCC 5 cut(s) 4, 18, 48, 111, 490
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 3 cut(s) 257, 1061, 1351
RsaNI GTAC 3 cut(s) 256, 1060, 1350
Rsr2I CGGWCCG 1 cut(s) 18
RsrII CGGWCCG 1 cut(s) 18
SalI GTCGAC 1 cut(s) 12
SapI GCTCTTC 2 cut(s) 426, 612
SaqAI TTAA 7 cut(s) 504, 749, 800, 897, 918, 1199, 1247
Sau3AI GATC 5 cut(s) 241, 347, 568, 929, 1156
Sau96I GGNCC 5 cut(s) 4, 18, 48, 111, 490
SchI GAGTC 4 cut(s) 19, 65, 931, 949
ScrFI CCNGG 4 cut(s) 29, 303, 328, 1138
SduI GDGCHC 2 cut(s) 265, 421
SfaNI GCATC 2 cut(s) 398, 845
SinI GGWCC 5 cut(s) 4, 18, 48, 111, 490
Sse9I AATT 1 cut(s) 544
SspI AATATT 1 cut(s) 1282
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 4 cut(s) 27, 301, 326, 1136
StyI CCWWGG 2 cut(s) 165, 1125
TaaI ACNGT 2 cut(s) 260, 299
TaiI ACGT 2 cut(s) 577, 1006
TaqI TCGA 4 cut(s) 13, 451, 603, 928
TaqII GACCGA 1 cut(s) 35
TasI AATT 1 cut(s) 544
TatI WGTACW 1 cut(s) 1349
TauI GCSGC 3 cut(s) 164, 173, 836
TfiI GAWTC 6 cut(s) 129, 249, 525, 560, 908, 1133
Tru1I TTAA 7 cut(s) 504, 749, 800, 897, 918, 1199, 1247
Tru9I TTAA 7 cut(s) 504, 749, 800, 897, 918, 1199, 1247
TscAI CASTG 3 cut(s) 265, 391, 594
TseI GCWGC 7 cut(s) 173, 428, 710, 764, 785, 878, 1019
TspDTI ATGAA 3 cut(s) 612, 639, 902
TspGWI ACGGA 2 cut(s) 31, 312
TspRI CASTG 3 cut(s) 265, 391, 594
Van91I CCANNNNNTGG 1 cut(s) 815
VpaK11BI GGWCC 5 cut(s) 4, 18, 48, 111, 490
VspI ATTAAT 1 cut(s) 504
XagI CCTNNNNNAGG 1 cut(s) 188
XmiI GTMKAC 2 cut(s) 13, 33
XmnI GAANNNNTTC 1 cut(s) 978
XspI CTAG 1 cut(s) 345
Zsp2I ATGCAT 1 cut(s) 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.