Rh4CG310300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
57180618 .. 57185739
5122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG310300.1

Sequence Viewer

Length: 1431 bp
ATGGACCGGAGTCGACGGACCGATAGCCCGGTCTACACTCGCCAATGGACCAGCGAGTCCGGAGGAGGAGCCACATCTCCAGCAATGTCTCCGGTGCGTGGCCACCACGCGCGGTCCTCCTCCGCCAGCGGAATCTCCAACATCAAACGCACTCAGAACTTCGCCGCCAAGGCTGCTGCTCAGCGCCTCGCTCAGGTAATGGCCTCGCAGAACACCGGAGATGACGACGACGACGATGAGGACGATCTCGGATTCCGGTACAGTGCTCCGCCTCCATTCTCTCTGGTCAGGAATGCCAACAGTCCCGGTGCTAAACCTGCGGTTCCGTCCGGGAGGACTGGTTCTACTAGATCGGCTTCACCCGCGTTAGCTCGGAACTTAGAGGATACTGCATCAGTTCGCTCAACCTCAGCAGGAAGGGCTCTTCGTGCCGCACCTCCATTGGTACCACCTCGAACAACAGTGAAGACTGCAACATCTATTCCACCGCTGGACCCTCCTACCGTTAACAGGAAAAAAGAAAACCGATTCGTATCCGAAACAGGAAATTATAAATCAAAAGATTCAGGAGATCAACGTGAGGCTTCCGCACTGCGTGATGAACTCGAAATGCTACAAGAAGAGCATGAAAATAATCTTGATAAGCTCCGGCATGAAGAAGAGAGATGTGAGGAAGTAGAAGCCAGAGTTAGGGAACTTGAAAAACAGGTTGCTGCTCTTGGAGAAGGTGTGTCATTGGAAGCTAAACTTTTAAGCAGGAAAGAAGCTGCCTTCCGACAAAAAGAGGCTGCTCTCAAAGATTTAAAACAACCAAAGGTTGGAGTTGCTACACAGGCCGCATCTCTTCGCTCTAAAGTGCAGAAAGCAAAAGAAGCAAATGCAGCTATTATGAAACAACTTAATGGAGCTGAATCTGAAGTTAAAGCCCTTCGATCCATGACTCAAAGAATGGTGTTGACTCAAAAAGAGATGGAAGAAGTAGTTCTGAAGCGATGTTGGTTAGCACGTAACTGGGGCTTGGCTGCAAAATACGGTATATGTGCAGATATTGCGGTATCTAAGTACGAACATTGGTCGTCCTTAGCTCCTCTTCCATTTGAGGTGGTTGTATCTGCCGGACAAAAAGCCAAGGAAGAATCCTGGGAAAAAGCTGATGATGATCCTGACAAGAGAAACAATCTTGTTCAGGACTTGAACGATTTAACTGGAGAAGGAAACATTGAGAGTATGCTTGCAGTTGAAATGGGATTGAAGGAGCTTGCTTTCCTGAAGGTTGAGGAGAATATTGTGCTTGCATTAGCCCAACAACGACGACCAAACTCTGCTCGGCTATCCTTCTCGGATATGAAATCACCGGCTGATCCAAAGTTTATGGAGGCAATTGGTATGTCTTTCTTTTTCCTAGATATGGAACTGAATGTATTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

476

Amino Acids

52.33

Weight (kDa)

7.01

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 552
AasI GACNNNNNNGTC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 325
Acc65I GGTACC 1 cut(s) 445
AccB1I GGYRCC 1 cut(s) 445
AccB7I CCANNNNNTGG 1 cut(s) 818
AccI GTMKAC 2 cut(s) 13, 33
AccII CGCG 3 cut(s) 110, 112, 365
AccIII TCCGGA 1 cut(s) 59
AclWI GGATC 3 cut(s) 927, 1154, 1355
AcoI YGGCCR 1 cut(s) 100
AcuI CTGAAG 3 cut(s) 936, 1007, 1289
AdeI CACNNNGTG 1 cut(s) 596
AfaI GTAC 3 cut(s) 260, 447, 1064
AfiI CCNNNNNNNGG 6 cut(s) 98, 193, 510, 690, 818, 1408
AgsI TTSAA 5 cut(s) 701, 1195, 1241, 1252, 1427
AjnI CCWGG 1 cut(s) 1139
AloI GAACNNNNNNTCC 2 cut(s) 325, 357
AluBI AGCT 9 cut(s) 371, 646, 743, 767, 884, 908, 1085, 1151, 1258
AluI AGCT 9 cut(s) 371, 646, 743, 767, 884, 908, 1085, 1151, 1258
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 3 cut(s) 927, 1154, 1355
Aor13HI TCCGGA 1 cut(s) 59
AoxI GGCC 3 cut(s) 100, 201, 834
ApeKI GCWGC 7 cut(s) 173, 176, 713, 767, 788, 881, 1022
Asp700I GAANNNNTTC 1 cut(s) 981
Asp718I GGTACC 1 cut(s) 445
AspLEI GCGC 2 cut(s) 112, 186
AspS9I GGNCC 5 cut(s) 4, 18, 48, 114, 493
AsuC2I CCSGG 3 cut(s) 29, 306, 331
AsuHPI GGTGA 2 cut(s) 351, 1344
AvaII GGWCC 5 cut(s) 4, 18, 48, 114, 493
BalI TGGCCA 1 cut(s) 102
BanI GGYRCC 1 cut(s) 445
BanII GRGCYC 1 cut(s) 424
BbsI GAAGAC 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 409
BbvI GCAGC 7 cut(s) 160, 163, 700, 754, 775, 893, 1009
BccI CCATC 1 cut(s) 964
BciT130I CCWGG 1 cut(s) 1141
BciVI GTATCC 2 cut(s) 379, 544
BcnI CCSGG 3 cut(s) 29, 306, 331
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 2 cut(s) 348, 1403
BfoI RGCGCY 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 325
BfuI GTATCC 2 cut(s) 379, 544
BglI GCCNNNNNGGC 1 cut(s) 170
BlpI GCTNAGC 1 cut(s) 180
Bme1390I CCNGG 4 cut(s) 29, 306, 331, 1141
Bme18I GGWCC 5 cut(s) 4, 18, 48, 114, 493
BmgT120I GGNCC 5 cut(s) 4, 18, 48, 114, 493
BmiI GGNNCC 4 cut(s) 70, 324, 447, 495
BmrFI CCNGG 4 cut(s) 29, 306, 331, 1141
BmrI ACTGGG 1 cut(s) 1021
BmsI GCATC 2 cut(s) 401, 848
BmuI ACTGGG 1 cut(s) 1021
BoxI GACNNNNGTC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 473
BpmI CTGGAG 2 cut(s) 63, 1227
Bpu10I CCTNAGC 3 cut(s) 192, 409, 1081
Bpu1102I GCTNAGC 1 cut(s) 180
BpuMI CCSGG 3 cut(s) 29, 306, 331
BsaAI YACGTR 1 cut(s) 1007
BsaBI GATNNNNATC 2 cut(s) 532, 1158
BsaJI CCNNGG 3 cut(s) 168, 1128, 1140
BsaWI WCCGGW 5 cut(s) 6, 59, 91, 215, 255
BsaXI ACNNNNNCTCC 4 cut(s) 325, 355, 714, 744
Bsc4I CCNNNNNNNGG 6 cut(s) 98, 193, 510, 690, 818, 1408
Bse118I RCCGGY 1 cut(s) 1354
Bse1I ACTGG 3 cut(s) 343, 1016, 1210
Bse3DI GCAATG 1 cut(s) 90
Bse8I GATNNNNATC 2 cut(s) 532, 1158
BseAI TCCGGA 1 cut(s) 59
BseBI CCWGG 1 cut(s) 1141
BseDI CCNNGG 3 cut(s) 168, 1128, 1140
BseJI GATNNNNATC 2 cut(s) 532, 1158
BseLI CCNNNNNNNGG 6 cut(s) 98, 193, 510, 690, 818, 1408
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 4 cut(s) 167, 194, 206, 423
BseNI ACTGG 3 cut(s) 343, 1016, 1210
BseRI GAGGAG 5 cut(s) 78, 81, 109, 1077, 1292
BseXI GCAGC 7 cut(s) 160, 163, 700, 754, 775, 893, 1009
BsgI GTGCAG 2 cut(s) 878, 1062
Bsh1236I CGCG 3 cut(s) 110, 112, 365
BshFI GGCC 3 cut(s) 102, 203, 836
BshNI GGYRCC 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 268
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 6 cut(s) 98, 193, 510, 690, 818, 1408
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 3 cut(s) 102, 203, 836
Bsp1286I GDGCHC 2 cut(s) 268, 424
Bsp13I TCCGGA 1 cut(s) 59
Bsp143I GATC 6 cut(s) 244, 350, 571, 932, 1159, 1360
Bsp1720I GCTNAGC 1 cut(s) 180
BspANI GGCC 3 cut(s) 102, 203, 836
BspCNI CTCAG 4 cut(s) 166, 193, 205, 422
BspEI TCCGGA 1 cut(s) 59
BspFNI CGCG 3 cut(s) 110, 112, 365
BspLI GGNNCC 4 cut(s) 70, 324, 447, 495
BspMI ACCTGC 1 cut(s) 325
BspPI GGATC 3 cut(s) 927, 1154, 1355
BspQI GCTCTTC 2 cut(s) 429, 615
BspT107I GGYRCC 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 1354
BsrI ACTGG 3 cut(s) 343, 1016, 1210
BssAI RCCGGY 1 cut(s) 1354
BssECI CCNNGG 3 cut(s) 168, 1128, 1140
BssMI GATC 6 cut(s) 244, 350, 571, 932, 1159, 1360
BssT1I CCWWGG 2 cut(s) 168, 1128
Bst2UI CCWGG 1 cut(s) 1141
Bst4CI ACNGT 5 cut(s) 263, 302, 463, 505, 1034
Bst6I CTCTTC 5 cut(s) 429, 615, 654, 849, 1095
BstAPI GCANNNNNTGC 1 cut(s) 1049
BstBAI YACGTR 1 cut(s) 1007
BstC8I GCNNGC 4 cut(s) 127, 1233, 1260, 1293
BstDEI CTNAG 7 cut(s) 153, 180, 192, 379, 409, 1059, 1081
BstENI CCTNNNNNAGG 1 cut(s) 191
BstFNI CGCG 3 cut(s) 110, 112, 365
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 2 cut(s) 112, 186
BstKTI GATC 6 cut(s) 247, 353, 574, 935, 1162, 1363
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 6 cut(s) 244, 350, 571, 932, 1159, 1360
BstNI CCWGG 1 cut(s) 1141
BstPAI GACNNNNGTC 1 cut(s) 9
BstSCI CCNGG 4 cut(s) 27, 304, 329, 1139
BstUI CGCG 3 cut(s) 110, 112, 365
BstV1I GCAGC 7 cut(s) 160, 163, 700, 754, 775, 893, 1009
BstV2I GAAGAC 1 cut(s) 473
BsuI GTATCC 2 cut(s) 379, 544
BsuRI GGCC 3 cut(s) 102, 203, 836
BtgZI GCGATG 1 cut(s) 1006
BtsI GCAGTG 1 cut(s) 590
BtsIMutI CAGTG 3 cut(s) 268, 468, 590
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 4 cut(s) 127, 1233, 1260, 1293
CfoI GCGC 2 cut(s) 112, 186
Cfr10I RCCGGY 1 cut(s) 1354
Cfr13I GGNCC 5 cut(s) 4, 18, 48, 114, 493
CpoI CGGWCCG 1 cut(s) 18
Csp6I GTAC 3 cut(s) 259, 446, 1063
CspI CGGWCCG 1 cut(s) 18
CviAII CATG 3 cut(s) 626, 653, 937
CviQI GTAC 3 cut(s) 259, 446, 1063
DdeI CTNAG 7 cut(s) 153, 180, 192, 379, 409, 1059, 1081
DpnI GATC 6 cut(s) 246, 352, 573, 934, 1161, 1362
DpnII GATC 6 cut(s) 244, 350, 571, 932, 1159, 1360
DraI TTTAAA 1 cut(s) 804
DraIII CACNNNGTG 1 cut(s) 596
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 5 cut(s) 429, 615, 654, 849, 1095
EarI CTCTTC 5 cut(s) 429, 615, 654, 849, 1095
EciI GGCGGA 2 cut(s) 112, 258
Eco130I CCWWGG 2 cut(s) 168, 1128
Eco24I GRGCYC 1 cut(s) 424
Eco47I GGWCC 5 cut(s) 4, 18, 48, 114, 493
Eco57I CTGAAG 3 cut(s) 936, 1007, 1289
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 1139
EcoT14I CCWWGG 2 cut(s) 168, 1128
EcoT38I GRGCYC 1 cut(s) 424
ErhI CCWWGG 2 cut(s) 168, 1128
FaeI CATG 3 cut(s) 629, 656, 940
FalI AAGNNNNNCTT 2 cut(s) 732, 764
FaqI GGGAC 1 cut(s) 288
FatI CATG 3 cut(s) 625, 652, 936
FauI CCCGC 1 cut(s) 370
FblI GTMKAC 2 cut(s) 13, 33
FriOI GRGCYC 1 cut(s) 424
FspBI CTAG 2 cut(s) 348, 1403
GlaI GCGC 2 cut(s) 111, 185
GsuI CTGGAG 2 cut(s) 63, 1227
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 3 cut(s) 102, 203, 836
HhaI GCGC 2 cut(s) 112, 186
Hin1II CATG 3 cut(s) 629, 656, 940
Hin6I GCGC 2 cut(s) 110, 184
HinP1I GCGC 2 cut(s) 110, 184
HincII GTYRAC 3 cut(s) 14, 508, 957
HindII GTYRAC 3 cut(s) 14, 508, 957
HpaI GTTAAC 1 cut(s) 508
HphI GGTGA 2 cut(s) 351, 1344
Hpy166II GTNNAC 4 cut(s) 14, 34, 508, 957
Hpy188I TCNGA 8 cut(s) 156, 251, 375, 538, 776, 916, 987, 1342
Hpy188III TCNNGA 7 cut(s) 60, 289, 567, 638, 1163, 1187, 1267
Hpy8I GTNNAC 4 cut(s) 14, 34, 508, 957
Hpy99I CGWCG 5 cut(s) 18, 230, 233, 236, 1314
HpyAV CCTTC 8 cut(s) 411, 719, 781, 938, 1205, 1246, 1264, 1345
HpyCH4III ACNGT 5 cut(s) 263, 302, 463, 505, 1034
HpyCH4IV ACGT 2 cut(s) 577, 1006
HpyCH4V TGCA 8 cut(s) 392, 473, 859, 881, 1025, 1043, 1235, 1295
HpyF3I CTNAG 7 cut(s) 153, 180, 192, 379, 409, 1059, 1081
HpySE526I ACGT 2 cut(s) 577, 1006
Hsp92II CATG 3 cut(s) 629, 656, 940
HspAI GCGC 2 cut(s) 110, 184
Kpn2I TCCGGA 1 cut(s) 59
KpnI GGTACC 1 cut(s) 449
KspAI GTTAAC 1 cut(s) 508
Kzo9I GATC 6 cut(s) 244, 350, 571, 932, 1159, 1360
LguI GCTCTTC 2 cut(s) 429, 615
LmnI GCTCC 6 cut(s) 68, 271, 651, 905, 1090, 1255
Lsp1109I GCAGC 7 cut(s) 160, 163, 700, 754, 775, 893, 1009
LweI GCATC 2 cut(s) 401, 848
MaeI CTAG 2 cut(s) 348, 1403
MaeII ACGT 2 cut(s) 577, 1006
MaeIII GTNAC 1 cut(s) 1007
MalI GATC 6 cut(s) 246, 352, 573, 934, 1161, 1362
MboI GATC 6 cut(s) 244, 350, 571, 932, 1159, 1360
MboII GAAGA 9 cut(s) 416, 478, 632, 668, 671, 836, 986, 1082, 1145
MfeI CAATTG 1 cut(s) 1380
MhlI GDGCHC 2 cut(s) 268, 424
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 2 cut(s) 547, 1380
MluNI TGGCCA 1 cut(s) 102
MlyI GAGTC 4 cut(s) 19, 65, 934, 952
MmeI TCCRAC 3 cut(s) 162, 799, 799
Mox20I TGGCCA 1 cut(s) 102
MroI TCCGGA 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 981
MscI TGGCCA 1 cut(s) 102
MseI TTAA 6 cut(s) 507, 752, 803, 900, 921, 1202
Msp20I TGGCCA 1 cut(s) 102
MspA1I CMGCKG 2 cut(s) 129, 490
MspR9I CCNGG 4 cut(s) 29, 306, 331, 1141
MunI CAATTG 1 cut(s) 1380
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 1141
MvnI CGCG 3 cut(s) 110, 112, 365
NciI CCSGG 3 cut(s) 29, 306, 331
NdeII GATC 6 cut(s) 244, 350, 571, 932, 1159, 1360
NlaIII CATG 3 cut(s) 629, 656, 940
NlaIV GGNNCC 4 cut(s) 70, 324, 447, 495
NmeAIII GCCGAG 1 cut(s) 1306
PciSI GCTCTTC 2 cut(s) 429, 615
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 240
PctI GAATGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 981
PfeI GAWTC 6 cut(s) 132, 252, 528, 563, 911, 1136
PflMI CCANNNNNTGG 1 cut(s) 818
PfoI TCCNGGA 1 cut(s) 329
PleI GAGTC 4 cut(s) 18, 64, 934, 952
PpsI GAGTC 4 cut(s) 18, 64, 934, 952
Ppu21I YACGTR 1 cut(s) 1007
PshAI GACNNNNGTC 1 cut(s) 9
PsiI TTATAA 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 1139
PspGI CCWGG 1 cut(s) 1139
PspN4I GGNNCC 4 cut(s) 70, 324, 447, 495
PspPI GGNCC 5 cut(s) 4, 18, 48, 114, 493
RsaI GTAC 3 cut(s) 260, 447, 1064
RsaNI GTAC 3 cut(s) 259, 446, 1063
Rsr2I CGGWCCG 1 cut(s) 18
RsrII CGGWCCG 1 cut(s) 18
SalI GTCGAC 1 cut(s) 12
SapI GCTCTTC 2 cut(s) 429, 615
SaqAI TTAA 6 cut(s) 507, 752, 803, 900, 921, 1202
Sau3AI GATC 6 cut(s) 244, 350, 571, 932, 1159, 1360
Sau96I GGNCC 5 cut(s) 4, 18, 48, 114, 493
SchI GAGTC 4 cut(s) 19, 65, 934, 952
ScrFI CCNGG 4 cut(s) 29, 306, 331, 1141
SduI GDGCHC 2 cut(s) 268, 424
SfaNI GCATC 2 cut(s) 401, 848
SinI GGWCC 5 cut(s) 4, 18, 48, 114, 493
Sse9I AATT 2 cut(s) 547, 1380
SspI AATATT 1 cut(s) 1285
SspMI CTAG 2 cut(s) 348, 1403
StyD4I CCNGG 4 cut(s) 27, 304, 329, 1139
StyI CCWWGG 2 cut(s) 168, 1128
TaaI ACNGT 5 cut(s) 263, 302, 463, 505, 1034
TaiI ACGT 2 cut(s) 580, 1009
TaqI TCGA 4 cut(s) 13, 454, 606, 931
TaqII GACCGA 1 cut(s) 35
TasI AATT 2 cut(s) 547, 1380
TauI GCSGC 3 cut(s) 167, 434, 839
TfiI GAWTC 6 cut(s) 132, 252, 528, 563, 911, 1136
Tru1I TTAA 6 cut(s) 507, 752, 803, 900, 921, 1202
Tru9I TTAA 6 cut(s) 507, 752, 803, 900, 921, 1202
TscAI CASTG 3 cut(s) 268, 468, 597
TseI GCWGC 7 cut(s) 173, 176, 713, 767, 788, 881, 1022
TspDTI ATGAA 5 cut(s) 615, 642, 669, 905, 1361
TspGWI ACGGA 2 cut(s) 31, 315
TspRI CASTG 3 cut(s) 268, 468, 597
Van91I CCANNNNNTGG 1 cut(s) 818
VpaK11BI GGWCC 5 cut(s) 4, 18, 48, 114, 493
XagI CCTNNNNNAGG 1 cut(s) 191
XmiI GTMKAC 2 cut(s) 13, 33
XmnI GAANNNNTTC 1 cut(s) 981
XspI CTAG 2 cut(s) 348, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.