FvH4_4g23093

Somatic embryogenesis receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015602
Physical Location & Seq
Forward (+)
25679489 .. 25681768
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23093.t1

Sequence Viewer

Length: 657 bp
ATGGCGTTGTGGGCTCTGCTTCATCTTCTCACCACCGCCCTCCTTCTCTCTTGGCCATTGACACCCACAACTGCAAACTTAGAAGGGGATGCTCTCTTTGCCTTGAGAAGAGCTGTCAAGGACTCCAACAATGTCCTCCAGAGCTGGGATCCGACCCTGGTTGATCCCTGTACTTGGTTTCATGTCACCTGCGACGGCGATAACCGAGTCACTCGACTAGACCTTGGAAATGCAAACCTGGTCGGCAGTCTAGTGCCTGAACTGGGCAAGCTGGAACGGCTTCAGTATCTGGAATTGTACATGAACAACTTGACTGGTTCTATACCAAAGGAACTGGGAGGATTGAAGAGCCTTGTGAGCTTGGATCTCTACCACAACAACTTCACTGGGTCTATCCCTTCCTCACTTTCTAACCTCTCCAATCTTAACTTCTTGCGACTAAACGGCAACAGACTGACCGGAACAATTCCGAGGAAGCTTACCAAACTCGGAAGCCTCAAGATCTTTGATGTATCGGACAATGATTTATGTGGTACTTTCCCAACCTCAGGCTCCTTCTCCAAGTTCTCAGAAGAAAGTTTCAAGAATAACCCAAGATTGGAAGGACCAGAGCTGATGGGATTTGTCAGATATGATACTACAGGAAACTGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

219

Amino Acids

24.08

Weight (kDa)

6.29

Isoelectric Point (pI)

23.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 26 - 65 1.2e-11 Leucine rich repeat N-terminal domain
LRR_8 PF13855 69 - 128 5.1e-07 Leucine rich repeat
LRR_14 PF23598 73 - 173 1.2e-11 Leucine-rich repeat region
LRR_4 PF12799 93 - 134 5e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23093
malus_domestica MD13G1125500.v1.1 MD16G1126300.v1.1
prunus_persica Prupe.1G219900_v2.0.a1
pyrus_communis pycom13g10950 pycom16g10740
rosa_chinensis RchiOBHm_Chr4g0429391
rosa_laevigata RLG00000007074
rosa_multiflora Rmu_sc0003708.1_g000021
rosa_roxburghii Rroxscaffold_5G00371030
rosa_rugosa Rorug04G0235700
rosa_samantha Rh4AG291400 Rh4BG297100 Rh4CG312700 Rh4DG294200
rosa_wichuraiana Rw4G025230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 197
Acc36I ACCTGC 1 cut(s) 197
AciI CCGC 1 cut(s) 36
AclWI GGATC 4 cut(s) 143, 156, 158, 372
AcoI YGGCCR 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 3 cut(s) 172, 299, 535
AfiI CCNNNNNNNGG 5 cut(s) 145, 174, 263, 548, 598
AgsI TTSAA 2 cut(s) 346, 583
AjnI CCWGG 2 cut(s) 156, 237
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AluBI AGCT 6 cut(s) 113, 144, 271, 360, 478, 613
AluI AGCT 6 cut(s) 113, 144, 271, 360, 478, 613
AlwI GGATC 4 cut(s) 143, 156, 158, 372
AlwNI CAGNNNCTG 1 cut(s) 289
AoxI GGCC 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 605
AsuHPI GGTGA 2 cut(s) 22, 178
AvaII GGWCC 1 cut(s) 605
AxyI CCTNAGG 1 cut(s) 547
BalI TGGCCA 1 cut(s) 55
BamHI GGATCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 16
BccI CCATC 1 cut(s) 610
BceAI ACGGC 3 cut(s) 211, 293, 460
BciT130I CCWGG 2 cut(s) 158, 239
BfaI CTAG 2 cut(s) 218, 251
BfmI CTRYAG 1 cut(s) 639
BfuAI ACCTGC 1 cut(s) 197
BglII AGATCT 1 cut(s) 501
Bme1390I CCNGG 2 cut(s) 158, 239
Bme18I GGWCC 1 cut(s) 605
BmgT120I GGNCC 1 cut(s) 605
BmiI GGNNCC 2 cut(s) 150, 553
BmrFI CCNGG 2 cut(s) 158, 239
BmrI ACTGGG 3 cut(s) 272, 344, 396
BmsI GCATC 1 cut(s) 79
BmuI ACTGGG 3 cut(s) 272, 344, 396
BpmI CTGGAG 1 cut(s) 122
BpuEI CTTGAG 2 cut(s) 124, 482
BsaJI CCNNGG 3 cut(s) 156, 223, 470
BsaWI WCCGGW 1 cut(s) 458
Bsc4I CCNNNNNNNGG 5 cut(s) 145, 174, 263, 548, 598
Bse1I ACTGG 4 cut(s) 267, 319, 339, 391
Bse21I CCTNAGG 1 cut(s) 547
BseBI CCWGG 2 cut(s) 158, 239
BseDI CCNNGG 3 cut(s) 156, 223, 470
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 5 cut(s) 145, 174, 263, 548, 598
BseMII CTCAG 2 cut(s) 561, 582
BseNI ACTGG 4 cut(s) 267, 319, 339, 391
BseYI CCCAGC 1 cut(s) 144
BshFI GGCC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 459
BslI CCNNNNNNNGG 5 cut(s) 145, 174, 263, 548, 598
BsnI GGCC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 16
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 4 cut(s) 148, 163, 364, 501
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 2 cut(s) 560, 581
BspLI GGNNCC 2 cut(s) 150, 553
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 4 cut(s) 143, 156, 158, 372
BspQI GCTCTTC 2 cut(s) 103, 341
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 4 cut(s) 267, 319, 339, 391
BssECI CCNNGG 3 cut(s) 156, 223, 470
BssMI GATC 4 cut(s) 148, 163, 364, 501
BssT1I CCWWGG 1 cut(s) 223
Bst2UI CCWGG 2 cut(s) 158, 239
Bst6I CTCTTC 2 cut(s) 103, 341
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 3 cut(s) 79, 547, 568
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 4 cut(s) 151, 166, 367, 504
BstMBI GATC 4 cut(s) 148, 163, 364, 501
BstMWI GCNNNNNNNGC 4 cut(s) 11, 98, 277, 357
BstNI CCWGG 2 cut(s) 158, 239
BstSCI CCNGG 2 cut(s) 156, 237
BstSFI CTRYAG 1 cut(s) 639
BstX2I RGATCY 3 cut(s) 148, 364, 501
BstYI RGATCY 3 cut(s) 148, 364, 501
Bsu36I CCTNAGG 1 cut(s) 547
BsuRI GGCC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 384
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 1 cut(s) 269
CaiI CAGNNNCTG 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 605
CsiI ACCWGGT 1 cut(s) 237
Csp6I GTAC 3 cut(s) 171, 298, 534
CviAII CATG 2 cut(s) 182, 301
CviQI GTAC 3 cut(s) 171, 298, 534
DdeI CTNAG 3 cut(s) 79, 547, 568
DpnI GATC 4 cut(s) 150, 165, 366, 503
DpnII GATC 4 cut(s) 148, 163, 364, 501
EaeI YGGCCR 1 cut(s) 53
Eam1104I CTCTTC 2 cut(s) 103, 341
EarI CTCTTC 2 cut(s) 103, 341
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 605
Eco57I CTGAAG 1 cut(s) 266
Eco81I CCTNAGG 1 cut(s) 547
EcoRII CCWGG 2 cut(s) 156, 237
EcoT14I CCWWGG 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 185, 304
FaiI YATR 5 cut(s) 183, 302, 323, 529, 633
FatI CATG 2 cut(s) 181, 300
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 16
FspBI CTAG 2 cut(s) 218, 251
GsaI CCCAGC 1 cut(s) 148
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 55
HapII CCGG 1 cut(s) 459
Hin1II CATG 2 cut(s) 185, 304
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 2 cut(s) 122, 207
HpaII CCGG 1 cut(s) 459
HphI GGTGA 2 cut(s) 22, 178
Hpy188I TCNGA 6 cut(s) 153, 471, 491, 517, 571, 629
Hpy188III TCNNGA 4 cut(s) 139, 290, 499, 583
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 5 cut(s) 53, 77, 408, 565, 596
HpyCH4V TGCA 3 cut(s) 74, 233, 651
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 98, 277, 357
HpyF3I CTNAG 3 cut(s) 79, 547, 568
Hsp92II CATG 2 cut(s) 185, 304
Kzo9I GATC 4 cut(s) 148, 163, 364, 501
LguI GCTCTTC 2 cut(s) 103, 341
LmnI GCTCC 1 cut(s) 557
LweI GCATC 1 cut(s) 79
MabI ACCWGGT 1 cut(s) 237
MaeI CTAG 2 cut(s) 218, 251
MaeIII GTNAC 2 cut(s) 184, 208
MalI GATC 4 cut(s) 150, 165, 366, 503
MboI GATC 4 cut(s) 148, 163, 364, 501
MboII GAAGA 4 cut(s) 17, 120, 358, 584
MflI RGATCY 3 cut(s) 148, 364, 501
MhlI GDGCHC 1 cut(s) 16
MlsI TGGCCA 1 cut(s) 55
MluCI AATT 2 cut(s) 293, 465
MluNI TGGCCA 1 cut(s) 55
MlyI GAGTC 2 cut(s) 116, 216
MmeI TCCRAC 2 cut(s) 150, 176
MnlI CCTC 8 cut(s) 50, 146, 332, 412, 425, 465, 506, 556
Mox20I TGGCCA 1 cut(s) 55
MroXI GAANNNNTTC 1 cut(s) 279
MscI TGGCCA 1 cut(s) 55
MseI TTAA 1 cut(s) 426
Msp20I TGGCCA 1 cut(s) 55
MspI CCGG 1 cut(s) 459
MspR9I CCNGG 2 cut(s) 158, 239
MvaI CCWGG 2 cut(s) 158, 239
MwoI GCNNNNNNNGC 4 cut(s) 11, 98, 277, 357
NdeII GATC 4 cut(s) 148, 163, 364, 501
NlaIII CATG 2 cut(s) 185, 304
NlaIV GGNNCC 2 cut(s) 150, 553
NmuCI GTSAC 2 cut(s) 184, 208
PaqCI CACCTGC 1 cut(s) 197
PciSI GCTCTTC 2 cut(s) 103, 341
PdmI GAANNNNTTC 1 cut(s) 279
PleI GAGTC 2 cut(s) 116, 215
PpsI GAGTC 2 cut(s) 116, 215
Psp6I CCWGG 2 cut(s) 156, 237
PspFI CCCAGC 1 cut(s) 144
PspGI CCWGG 2 cut(s) 156, 237
PspN4I GGNNCC 2 cut(s) 150, 553
PspPI GGNCC 1 cut(s) 605
PstNI CAGNNNCTG 1 cut(s) 289
PsuI RGATCY 3 cut(s) 148, 364, 501
RsaI GTAC 3 cut(s) 172, 299, 535
RsaNI GTAC 3 cut(s) 171, 298, 534
SapI GCTCTTC 2 cut(s) 103, 341
SaqAI TTAA 1 cut(s) 426
Sau3AI GATC 4 cut(s) 148, 163, 364, 501
Sau96I GGNCC 1 cut(s) 605
SchI GAGTC 2 cut(s) 116, 216
ScrFI CCNGG 2 cut(s) 158, 239
SduI GDGCHC 1 cut(s) 16
SexAI ACCWGGT 1 cut(s) 237
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 639
SinI GGWCC 1 cut(s) 605
SmlI CTYRAG 2 cut(s) 103, 497
SmoI CTYRAG 2 cut(s) 103, 497
Sse9I AATT 2 cut(s) 293, 465
SsiI CCGC 1 cut(s) 36
SspMI CTAG 2 cut(s) 218, 251
StyD4I CCNGG 2 cut(s) 156, 237
StyI CCWWGG 1 cut(s) 223
TaqI TCGA 1 cut(s) 214
TasI AATT 2 cut(s) 293, 465
TatI WGTACW 2 cut(s) 170, 297
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 2 cut(s) 184, 208
Tsp45I GTSAC 2 cut(s) 184, 208
TspDTI ATGAA 3 cut(s) 11, 170, 317
TspRI CASTG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 2 cut(s) 218, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.