Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015602

Physical Location & Seq

Genomic Coordinates Reverse (-)

9302201 .. 9304608

Gene Structure 2408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1125500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGATCTGGGTTTTGCTGTTTCATCTTGTTACTGTTGCCCTTGTTCTACTGTCACCCACAACTGCAAACCTAGAAGGAGATGCTTTGTTTGCTTTGAGACAAGCAGTGAAGGATCCGAATAGTGTTCTGCAGAGCTGGGATCCGACCTTGGTTGATCCCTGCACTTGGTTTCATGTCACCTGCGACGGCGACAATCGGGTTACTCGACTAGACCTTGGAAATGCGAACCTGTCGGGCAGTCTTGTACCCGAGTTGGGGAAGCTCGAGCGCCTTCAGTATCTGGAATTGTACATGAACAACTTGATGGGATCTCTACCAAAACAGCTTGGAGGATTGAAGAGCCTTGTGAGCTTGGATCTCTACCACAATAACTTCTCTGGGACCATCCCACCCTCCCTCTCCAACCTCTCCAATCTCAAATTCTTGAGACTGAATGGTAACGGACTGACTGGAAGAATACCTAGAGAGCTTACCAAACTTCAAAGCCTCAAGATACTTGATGTATCCAGCAACGATTTGTGTGGTACTTTCCCAACCTCAGGCTCCTTCTCCCAGTTATCTGAAGAAAGTTTCAAGAATAACCCAAGATTGGAAGGACCAGAACTGATGGGATTTGTGAGATATGATAGTACCAGAGGAAGCTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

218

Amino Acids

23.88

Weight (kDa)

6.29

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	24 - 63	2.1e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	71 - 171	1.9e-12	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23093
malus_domestica	MD13G1125500.v1.1 MD16G1126300.v1.1
prunus_persica	Prupe.1G219900_v2.0.a1
pyrus_communis	pycom13g10950 pycom16g10740
rosa_chinensis	RchiOBHm_Chr4g0429391
rosa_laevigata	RLG00000007074
rosa_multiflora	Rmu_sc0003708.1_g000021
rosa_roxburghii	Rroxscaffold_5G00371030
rosa_rugosa	Rorug04G0235700
rosa_samantha	Rh4AG291400 Rh4BG297100 Rh4CG312700 Rh4DG294200
rosa_wichuraiana	Rw4G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	191
AclWI	GGATC	7 cut(s)	110, 123, 137, 150, 152, 319, 366
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	2 cut(s)	260, 585
AfaI	GTAC	4 cut(s)	249, 293, 529, 634
AfiI	CCNNNNNNNGG	5 cut(s)	168, 257, 258, 542, 592
AgsI	TTSAA	3 cut(s)	340, 485, 577
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AluBI	AGCT	6 cut(s)	138, 265, 328, 354, 472, 645
AluI	AGCT	6 cut(s)	138, 265, 328, 354, 472, 645
Alw26I	GTCTC	2 cut(s)	94, 424
AlwI	GGATC	7 cut(s)	110, 123, 137, 150, 152, 319, 366
AlwNI	CAGNNNCTG	1 cut(s)	283
Ama87I	CYCGRG	2 cut(s)	251, 266
ApeKI	GCWGC	1 cut(s)	645
ApoI	RAATTY	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	384, 599
AsuHPI	GGTGA	2 cut(s)	48, 172
AvaI	CYCGRG	2 cut(s)	251, 266
AvaII	GGWCC	2 cut(s)	384, 599
AxyI	CCTNAGG	1 cut(s)	541
BamHI	GGATCC	2 cut(s)	115, 142
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	3 cut(s)	301, 395, 604
BceAI	ACGGC	1 cut(s)	205
BciVI	GTATCC	1 cut(s)	517
BcoDI	GTCTC	2 cut(s)	94, 424
BfaI	CTAG	3 cut(s)	74, 212, 465
BfmI	CTRYAG	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	517
BisI	GCNGC	1 cut(s)	646
BlsI	GCNGC	1 cut(s)	647
Bme18I	GGWCC	2 cut(s)	384, 599
BmeT110I	CYCGRG	2 cut(s)	251, 266
BmgT120I	GGNCC	2 cut(s)	384, 599
BmiI	GGNNCC	4 cut(s)	117, 144, 385, 547
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	1 cut(s)	73
BmuI	ACTGGG	1 cut(s)	550
BpuEI	CTTGAG	2 cut(s)	448, 476
BsaJI	CCNNGG	2 cut(s)	150, 217
Bsc4I	CCNNNNNNNGG	5 cut(s)	168, 257, 258, 542, 592
Bse1I	ACTGG	2 cut(s)	457, 556
Bse21I	CCTNAGG	1 cut(s)	541
BseDI	CCNNGG	2 cut(s)	150, 217
BseGI	GGATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	5 cut(s)	168, 257, 258, 542, 592
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	2 cut(s)	457, 556
BseXI	GCAGC	1 cut(s)	632
BseYI	CCCAGC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	148
BsiHKCI	CYCGRG	2 cut(s)	251, 266
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	5 cut(s)	168, 257, 258, 542, 592
BsmAI	GTCTC	2 cut(s)	94, 424
BsmFI	GGGAC	1 cut(s)	397
BsoBI	CYCGRG	2 cut(s)	251, 266
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	6 cut(s)	6, 115, 142, 157, 311, 358
BspCNI	CTCAG	1 cut(s)	554
BspLI	GGNNCC	4 cut(s)	117, 144, 385, 547
BspMAI	CTGCAG	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	7 cut(s)	110, 123, 137, 150, 152, 319, 366
BspQI	GCTCTTC	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	457, 556
BssECI	CCNNGG	2 cut(s)	150, 217
BssMI	GATC	6 cut(s)	6, 115, 142, 157, 311, 358
BssT1I	CCWWGG	2 cut(s)	150, 217
Bst4CI	ACNGT	2 cut(s)	37, 54
Bst6I	CTCTTC	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	541
BstF5I	GGATG	1 cut(s)	387
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	6 cut(s)	9, 118, 145, 160, 314, 361
BstMAI	GTCTC	2 cut(s)	94, 424
BstMBI	GATC	6 cut(s)	6, 115, 142, 157, 311, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 351
BstSFI	CTRYAG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	632
BstX2I	RGATCY	4 cut(s)	115, 142, 311, 358
BstYI	RGATCY	4 cut(s)	115, 142, 311, 358
Bsu36I	CCTNAGG	1 cut(s)	541
BsuI	GTATCC	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	387
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	191
CaiI	CAGNNNCTG	1 cut(s)	283
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	384, 599
Csp6I	GTAC	4 cut(s)	248, 292, 528, 633
CviAII	CATG	2 cut(s)	176, 295
CviJI	RGCY	9 cut(s)	138, 265, 328, 345, 354, 472, 489, 546, 645
CviKI_1	RGCY	9 cut(s)	138, 265, 328, 345, 354, 472, 489, 546, 645
CviQI	GTAC	4 cut(s)	248, 292, 528, 633
DdeI	CTNAG	1 cut(s)	541
DpnI	GATC	6 cut(s)	8, 117, 144, 159, 313, 360
DpnII	GATC	6 cut(s)	6, 115, 142, 157, 311, 358
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco130I	CCWWGG	2 cut(s)	150, 217
Eco47I	GGWCC	2 cut(s)	384, 599
Eco57I	CTGAAG	2 cut(s)	260, 585
Eco81I	CCTNAGG	1 cut(s)	541
Eco88I	CYCGRG	2 cut(s)	251, 266
EcoT14I	CCWWGG	2 cut(s)	150, 217
ErhI	CCWWGG	2 cut(s)	150, 217
FaeI	CATG	2 cut(s)	179, 298
FaiI	YATR	3 cut(s)	177, 296, 627
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	2 cut(s)	175, 294
Fnu4HI	GCNGC	1 cut(s)	646
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	646
FspBI	CTAG	3 cut(s)	74, 212, 465
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	646
GsaI	CCCAGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	274
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	179, 298
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HphI	GGTGA	2 cut(s)	48, 172
Hpy188I	TCNGA	3 cut(s)	120, 147, 565
Hpy188III	TCNNGA	4 cut(s)	284, 427, 493, 577
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	5 cut(s)	71, 106, 284, 559, 590
HpyCH4III	ACNGT	2 cut(s)	37, 54
HpyCH4V	TGCA	4 cut(s)	68, 133, 165, 648
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 351
HpyF3I	CTNAG	1 cut(s)	541
Hsp92II	CATG	2 cut(s)	179, 298
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	6 cut(s)	6, 115, 142, 157, 311, 358
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	1 cut(s)	632
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	3 cut(s)	74, 212, 465
MaeIII	GTNAC	5 cut(s)	31, 54, 178, 202, 440
MalI	GATC	6 cut(s)	8, 117, 144, 159, 313, 360
MboI	GATC	6 cut(s)	6, 115, 142, 157, 311, 358
MboII	GAAGA	3 cut(s)	352, 468, 578
MflI	RGATCY	4 cut(s)	115, 142, 311, 358
MluCI	AATT	2 cut(s)	287, 422
MmeI	TCCRAC	2 cut(s)	170, 429
MnlI	CCTC	7 cut(s)	326, 406, 410, 419, 500, 550, 632
MwoI	GCNNNNNNNGC	2 cut(s)	92, 351
NdeII	GATC	6 cut(s)	6, 115, 142, 157, 311, 358
NlaIII	CATG	2 cut(s)	179, 298
NlaIV	GGNNCC	4 cut(s)	117, 144, 385, 547
NmuCI	GTSAC	2 cut(s)	54, 178
PaeR7I	CTCGAG	1 cut(s)	266
PaqCI	CACCTGC	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	647
PspFI	CCCAGC	1 cut(s)	138
PspN4I	GGNNCC	4 cut(s)	117, 144, 385, 547
PspPI	GGNCC	2 cut(s)	384, 599
PspXI	VCTCGAGB	1 cut(s)	266
PstI	CTGCAG	1 cut(s)	135
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	4 cut(s)	115, 142, 311, 358
RsaI	GTAC	4 cut(s)	249, 293, 529, 634
RsaNI	GTAC	4 cut(s)	248, 292, 528, 633
SapI	GCTCTTC	1 cut(s)	335
SatI	GCNGC	1 cut(s)	646
Sau3AI	GATC	6 cut(s)	6, 115, 142, 157, 311, 358
Sau96I	GGNCC	2 cut(s)	384, 599
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	131
Sfr274I	CTCGAG	1 cut(s)	266
SinI	GGWCC	2 cut(s)	384, 599
SlaI	CTCGAG	1 cut(s)	266
SmlI	CTYRAG	3 cut(s)	266, 427, 491
SmoI	CTYRAG	3 cut(s)	266, 427, 491
Sse9I	AATT	2 cut(s)	287, 422
SspMI	CTAG	3 cut(s)	74, 212, 465
StyI	CCWWGG	2 cut(s)	150, 217
TaaI	ACNGT	2 cut(s)	37, 54
TaqI	TCGA	2 cut(s)	208, 267
TasI	AATT	2 cut(s)	287, 422
TatI	WGTACW	1 cut(s)	291
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	2 cut(s)	54, 178
TseI	GCWGC	1 cut(s)	645
Tsp45I	GTSAC	2 cut(s)	54, 178
TspDTI	ATGAA	3 cut(s)	14, 164, 311
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	114
VpaK11BI	GGWCC	2 cut(s)	384, 599
XapI	RAATTY	1 cut(s)	422
XhoI	CTCGAG	1 cut(s)	266
XspI	CTAG	3 cut(s)	74, 212, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.