Prupe.1G219900_v2.0.a1

Somatic embryogenesis receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015602
Physical Location & Seq
Forward (+)
23431616 .. 23434177
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G219900.1

Sequence Viewer

Length: 660 bp
ATGGCGATCTGGGGTTTGCTTCATCTTGTTGCTGCTGCTGCCCTTGTTCTCTCCTGCCCTTTGGCACCCACAAGTGCAAACTTAGAAGGGGATGCTCTGTACGCGTTGAGAAGAGCTGTGAATGACCCAAAGAGTGTTCTGCAGAGCTGGGATCCCACCTTGGTTGATCCCTGCACTTGGTTTCATGTCACTTGCGACGCTGACAATCGGGTCACACGACTAGACCTTGGAAATGCAAACTTATCGGGCAGTCTAGTACCCGAGTTAGGGAAGCTCGAGCGCCTTCAGTATCTGGAATTGTACATGAACAACTTGATGGGTTGTATACCAAAAGAGCTTGGAGGATTGAAGAGCCTTGTGAGCTTGGATCTCTACCACAATAACTTCTCTGGGGCCATCCCACCCTCCCTTTCCAACCTCTCCAATCTTAAATTCTTGAGACTGAATGGTAACAGACTGACTGGAAGAATTCCAAGGGAACTTACCAAACTTCAGAATCTGAAGATCCTTGATGTATCCAACAACGATTTATGTGGTACTTTCCCAACCTCGGGCCCTTTCTCCAAGTTCTCAGAGGAAAGTTTCAAGAATAACCCAAGATTGGAAGGACCAGAACTGATGGGATTTGTGAGATACGATACCAGAGGGAGCTGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

220

Amino Acids

24.12

Weight (kDa)

7.59

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23093
malus_domestica MD13G1125500.v1.1 MD16G1126300.v1.1
prunus_persica Prupe.1G219900_v2.0.a1
pyrus_communis pycom13g10950 pycom16g10740
rosa_chinensis RchiOBHm_Chr4g0429391
rosa_laevigata RLG00000007074
rosa_multiflora Rmu_sc0003708.1_g000021
rosa_roxburghii Rroxscaffold_5G00371030
rosa_rugosa Rorug04G0235700
rosa_samantha Rh4AG291400 Rh4BG297100 Rh4CG312700 Rh4DG294200
rosa_wichuraiana Rw4G025230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 64
AccI GTMKAC 1 cut(s) 325
AccII CGCG 1 cut(s) 104
AclWI GGATC 5 cut(s) 146, 159, 161, 375, 499
AcsI RAATTY 2 cut(s) 431, 468
AcuI CTGAAG 3 cut(s) 269, 476, 521
AfaI GTAC 4 cut(s) 101, 258, 302, 538
AfiI CCNNNNNNNGG 6 cut(s) 177, 266, 267, 550, 551, 601
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 2 cut(s) 349, 586
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AluBI AGCT 6 cut(s) 116, 147, 274, 337, 363, 651
AluI AGCT 6 cut(s) 116, 147, 274, 337, 363, 651
Alw26I GTCTC 1 cut(s) 433
AlwI GGATC 5 cut(s) 146, 159, 161, 375, 499
AlwNI CAGNNNCTG 2 cut(s) 292, 499
Ama87I CYCGRG 3 cut(s) 260, 275, 550
AoxI GGCC 2 cut(s) 393, 553
ApaI GGGCCC 1 cut(s) 557
ApeKI GCWGC 4 cut(s) 32, 35, 38, 651
ApoI RAATTY 2 cut(s) 431, 468
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 4 cut(s) 393, 553, 554, 608
AvaI CYCGRG 3 cut(s) 260, 275, 550
AvaII GGWCC 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 557
BamHI GGATCC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 557
BbvI GCAGC 4 cut(s) 19, 22, 25, 638
BccI CCATC 3 cut(s) 310, 404, 613
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciVI GTATCC 1 cut(s) 526
BcoDI GTCTC 1 cut(s) 433
BfaI CTAG 2 cut(s) 221, 254
BfmI CTRYAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 283
BfuI GTATCC 1 cut(s) 526
BisI GCNGC 4 cut(s) 33, 36, 39, 652
BlsI GCNGC 4 cut(s) 34, 37, 40, 653
Bme18I GGWCC 1 cut(s) 608
BmeT110I CYCGRG 3 cut(s) 260, 275, 550
BmgT120I GGNCC 4 cut(s) 393, 553, 554, 608
BmiI GGNNCC 4 cut(s) 66, 153, 394, 555
BmsI GCATC 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 457
BsaJI CCNNGG 4 cut(s) 159, 226, 473, 549
Bsc4I CCNNNNNNNGG 6 cut(s) 177, 266, 267, 550, 551, 601
Bse1I ACTGG 1 cut(s) 466
BseDI CCNNGG 4 cut(s) 159, 226, 473, 549
BseGI GGATG 2 cut(s) 97, 396
BseLI CCNNNNNNNGG 6 cut(s) 177, 266, 267, 550, 551, 601
BseMII CTCAG 1 cut(s) 585
BseNI ACTGG 1 cut(s) 466
BseSI GKGCMC 1 cut(s) 557
BseXI GCAGC 4 cut(s) 19, 22, 25, 638
BseYI CCCAGC 1 cut(s) 147
BsgI GTGCAG 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 2 cut(s) 395, 555
BshNI GGYRCC 1 cut(s) 64
BsiHKCI CYCGRG 3 cut(s) 260, 275, 550
BslI CCNNNNNNNGG 6 cut(s) 177, 266, 267, 550, 551, 601
BsmAI GTCTC 1 cut(s) 433
BsnI GGCC 2 cut(s) 395, 555
BsoBI CYCGRG 3 cut(s) 260, 275, 550
Bsp120I GGGCCC 1 cut(s) 553
Bsp1286I GDGCHC 1 cut(s) 557
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 5 cut(s) 6, 151, 166, 367, 504
BspANI GGCC 2 cut(s) 395, 555
BspCNI CTCAG 1 cut(s) 584
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 4 cut(s) 66, 153, 394, 555
BspMAI CTGCAG 1 cut(s) 144
BspPI GGATC 5 cut(s) 146, 159, 161, 375, 499
BspQI GCTCTTC 2 cut(s) 106, 344
BspT107I GGYRCC 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 4 cut(s) 159, 226, 473, 549
BssMI GATC 5 cut(s) 6, 151, 166, 367, 504
BssNAI GTATAC 1 cut(s) 326
BssT1I CCWWGG 3 cut(s) 159, 226, 473
Bst1107I GTATAC 1 cut(s) 326
Bst6I CTCTTC 2 cut(s) 106, 344
BstAUI TGTACA 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 82, 571
BstF5I GGATG 2 cut(s) 97, 396
BstFNI CGCG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 5 cut(s) 9, 154, 169, 370, 507
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 5 cut(s) 6, 151, 166, 367, 504
BstMWI GCNNNNNNNGC 3 cut(s) 38, 101, 360
BstSFI CTRYAG 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 557
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 4 cut(s) 19, 22, 25, 638
BstX2I RGATCY 3 cut(s) 151, 367, 504
BstYI RGATCY 3 cut(s) 151, 367, 504
BstZ17I GTATAC 1 cut(s) 326
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 2 cut(s) 395, 555
BtsCI GGATG 2 cut(s) 97, 396
CaiI CAGNNNCTG 2 cut(s) 292, 499
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 4 cut(s) 393, 553, 554, 608
CseI GACGC 1 cut(s) 206
Csp6I GTAC 4 cut(s) 100, 257, 301, 537
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviAII CATG 2 cut(s) 185, 304
CviJI RGCY 9 cut(s) 116, 147, 274, 337, 354, 363, 395, 555, 651
CviKI_1 RGCY 9 cut(s) 116, 147, 274, 337, 354, 363, 395, 555, 651
CviQI GTAC 4 cut(s) 100, 257, 301, 537
DdeI CTNAG 2 cut(s) 82, 571
DpnI GATC 5 cut(s) 8, 153, 168, 369, 506
DpnII GATC 5 cut(s) 6, 151, 166, 367, 504
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 2 cut(s) 106, 344
EarI CTCTTC 2 cut(s) 106, 344
Eco130I CCWWGG 3 cut(s) 159, 226, 473
Eco24I GRGCYC 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 608
Eco57I CTGAAG 3 cut(s) 269, 476, 521
Eco88I CYCGRG 3 cut(s) 260, 275, 550
EcoO109I RGGNCCY 1 cut(s) 554
EcoRI GAATTC 1 cut(s) 468
EcoT14I CCWWGG 3 cut(s) 159, 226, 473
EcoT38I GRGCYC 1 cut(s) 557
ErhI CCWWGG 3 cut(s) 159, 226, 473
FaeI CATG 2 cut(s) 188, 307
FaiI YATR 4 cut(s) 186, 305, 326, 532
FatI CATG 2 cut(s) 184, 303
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 4 cut(s) 33, 36, 39, 652
FokI GGATG 2 cut(s) 104, 383
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 4 cut(s) 33, 36, 39, 652
FspBI CTAG 2 cut(s) 221, 254
GlaI GCGC 1 cut(s) 281
GluI GCNGC 4 cut(s) 33, 36, 39, 652
GsaI CCCAGC 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 2 cut(s) 395, 555
HgaI GACGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 282
Hin1II CATG 2 cut(s) 188, 307
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HinfI GANTC 1 cut(s) 496
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 3 cut(s) 495, 501, 574
Hpy188III TCNNGA 3 cut(s) 293, 436, 586
Hpy8I GTNNAC 1 cut(s) 326
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 3 cut(s) 80, 293, 599
HpyCH4V TGCA 5 cut(s) 77, 142, 174, 236, 654
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 101, 360
HpyF3I CTNAG 2 cut(s) 82, 571
Hsp92II CATG 2 cut(s) 188, 307
HspAI GCGC 1 cut(s) 280
Kzo9I GATC 5 cut(s) 6, 151, 166, 367, 504
LguI GCTCTTC 2 cut(s) 106, 344
LmnI GCTCC 1 cut(s) 648
LpnPI CCDG 8 cut(s) 67, 133, 184, 278, 375, 447, 624, 655
Lsp1109I GCAGC 4 cut(s) 19, 22, 25, 638
LweI GCATC 1 cut(s) 82
MaeI CTAG 2 cut(s) 221, 254
MaeIII GTNAC 3 cut(s) 187, 211, 449
MalI GATC 5 cut(s) 8, 153, 168, 369, 506
MboI GATC 5 cut(s) 6, 151, 166, 367, 504
MboII GAAGA 4 cut(s) 123, 361, 477, 514
MflI RGATCY 3 cut(s) 151, 367, 504
MhlI GDGCHC 1 cut(s) 557
MluCI AATT 3 cut(s) 296, 431, 468
MluI ACGCGT 1 cut(s) 102
MmeI TCCRAC 2 cut(s) 438, 543
MnlI CCTC 6 cut(s) 335, 415, 428, 559, 568, 638
MseI TTAA 1 cut(s) 429
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 38, 101, 360
NdeII GATC 5 cut(s) 6, 151, 166, 367, 504
NlaIII CATG 2 cut(s) 188, 307
NlaIV GGNNCC 4 cut(s) 66, 153, 394, 555
NmuCI GTSAC 2 cut(s) 187, 211
PaeR7I CTCGAG 1 cut(s) 275
PciSI GCTCTTC 2 cut(s) 106, 344
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PfeI GAWTC 1 cut(s) 496
PkrI GCNGC 4 cut(s) 34, 37, 40, 653
PspFI CCCAGC 1 cut(s) 147
PspN4I GGNNCC 4 cut(s) 66, 153, 394, 555
PspOMI GGGCCC 1 cut(s) 553
PspPI GGNCC 4 cut(s) 393, 553, 554, 608
PspXI VCTCGAGB 1 cut(s) 275
PstI CTGCAG 1 cut(s) 144
PstNI CAGNNNCTG 2 cut(s) 292, 499
PsuI RGATCY 3 cut(s) 151, 367, 504
RsaI GTAC 4 cut(s) 101, 258, 302, 538
RsaNI GTAC 4 cut(s) 100, 257, 301, 537
SapI GCTCTTC 2 cut(s) 106, 344
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 4 cut(s) 33, 36, 39, 652
Sau3AI GATC 5 cut(s) 6, 151, 166, 367, 504
Sau96I GGNCC 4 cut(s) 393, 553, 554, 608
SduI GDGCHC 1 cut(s) 557
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 140
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 608
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 275, 436
SmoI CTYRAG 2 cut(s) 275, 436
Sse9I AATT 3 cut(s) 296, 431, 468
SspMI CTAG 2 cut(s) 221, 254
StyI CCWWGG 3 cut(s) 159, 226, 473
TaqI TCGA 1 cut(s) 276
TasI AATT 3 cut(s) 296, 431, 468
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 1 cut(s) 496
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseFI GTSAC 2 cut(s) 187, 211
TseI GCWGC 4 cut(s) 32, 35, 38, 651
Tsp45I GTSAC 2 cut(s) 187, 211
TspDTI ATGAA 3 cut(s) 11, 173, 320
VpaK11BI GGWCC 1 cut(s) 608
XapI RAATTY 2 cut(s) 431, 468
XhoI CTCGAG 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 325
XspI CTAG 2 cut(s) 221, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.