FvH4_4g24890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013289
Physical Location & Seq
Forward (+)
26850664 .. 26851411
748 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24890.t1

Sequence Viewer

Length: 384 bp
ATGGCTGCTCCTCTGGCATCGGCTGCTGCCGCTGCTACTCGAGTATTCTGTCTCCCTCAAAATCTAAAACCACGCACCAGTTTGAGATTTGGTACGTTTCGGTGCTCCAACAACAACAACAACGGCAACAACAAAGTAGCGCTCAGGACTTGCAAAAATTGCAAAACCCAGTTCGATCCATCTCTCAATCACCTCAGGGCTTGTCGATTTCACACCGCTCATTTTGGAGGAGAAACAAAGAGGAAGTTTGAAAGTGTGTACACGGGGGGCACCATGAGCACTCCCAACTCTGGCAAAGTTGTTCAATACTGGCATTGCTGTGGCTCTGAAGATCCCTTTGACCCTGGATGTACCGCTGCTCCTCACTCCTCCTATGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.88

Weight (kDa)

9.16

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38060 AT5G38060
fragaria_vesca FvH4_4g24890
prunus_persica Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1
pyrus_communis pycom09g17450
rosa_chinensis RchiOBHm_Chr3g0493581
rosa_laevigata RLG00000022702
rosa_multiflora Rmu_sc0000568.1_g000002
rosa_roxburghii Rroxscaffold_6G00391460
rosa_rugosa Rorug03G0262900
rosa_samantha Rh3AG311500 Rh3BG347500 Rh3CG345500 Rh3DG347700
rosa_wichuraiana Rw3G027350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 269
AccBSI CCGCTC 1 cut(s) 218
AciI CCGC 3 cut(s) 30, 216, 354
AclWI GGATC 2 cut(s) 170, 326
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 3 cut(s) 94, 260, 352
AfeI AGCGCT 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 2 cut(s) 251, 305
AjnI CCWGG 1 cut(s) 343
Alw21I GWGCWC 2 cut(s) 107, 281
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 2 cut(s) 170, 326
Ama87I CYCGRG 1 cut(s) 39
Aor51HI AGCGCT 1 cut(s) 141
ApeKI GCWGC 5 cut(s) 5, 23, 26, 32, 356
AspLEI GCGC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 182
AvaI CYCGRG 1 cut(s) 39
AxyI CCTNAGG 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 269
Bbv12I GWGCWC 2 cut(s) 107, 281
BbvI GCAGC 4 cut(s) 10, 13, 19, 343
BccI CCATC 1 cut(s) 187
BceAI ACGGC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 143
BisI GCNGC 6 cut(s) 6, 24, 27, 30, 33, 357
BlsI GCNGC 6 cut(s) 7, 25, 28, 31, 34, 358
Bme1390I CCNGG 1 cut(s) 345
BmeT110I CYCGRG 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 345
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 3 cut(s) 78, 169, 314
Bse21I CCTNAGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 157, 208
BseNI ACTGG 3 cut(s) 78, 169, 314
BseRI GAGGAG 3 cut(s) 243, 351, 358
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 4 cut(s) 10, 13, 19, 343
BshNI GGYRCC 1 cut(s) 269
BsiHKAI GWGCWC 2 cut(s) 107, 281
BsiHKCI CYCGRG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 56
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 3 cut(s) 107, 272, 281
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 2 cut(s) 175, 331
BspACI CCGC 3 cut(s) 30, 216, 354
BspCNI CTCAG 2 cut(s) 156, 207
BspLI GGNNCC 1 cut(s) 271
BspPI GGATC 2 cut(s) 170, 326
BspT107I GGYRCC 1 cut(s) 269
BsrBI CCGCTC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 313
BsrGI TGTACA 1 cut(s) 258
BsrI ACTGG 3 cut(s) 78, 169, 314
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 2 cut(s) 175, 331
Bst2UI CCWGG 1 cut(s) 345
BstAPI GCANNNNNTGC 2 cut(s) 23, 159
BstAUI TGTACA 1 cut(s) 258
BstDEI CTNAG 2 cut(s) 143, 194
BstF5I GGATG 1 cut(s) 353
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 178, 334
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 2 cut(s) 175, 331
BstMWI GCNNNNNNNGC 6 cut(s) 14, 23, 29, 32, 159, 276
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 4 cut(s) 10, 13, 19, 343
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
Bsu36I CCTNAGG 1 cut(s) 194
BtsCI GGATG 1 cut(s) 353
CfoI GCGC 1 cut(s) 142
Csp6I GTAC 3 cut(s) 93, 259, 351
CviAII CATG 1 cut(s) 274
CviJI RGCY 4 cut(s) 5, 23, 200, 324
CviKI_1 RGCY 4 cut(s) 5, 23, 200, 324
CviQI GTAC 3 cut(s) 93, 259, 351
DdeI CTNAG 2 cut(s) 143, 194
DpnI GATC 2 cut(s) 177, 333
DpnII GATC 2 cut(s) 175, 331
Eco47III AGCGCT 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 348
Eco81I CCTNAGG 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 343
FaeI CATG 1 cut(s) 277
FaiI YATR 2 cut(s) 275, 375
FatI CATG 1 cut(s) 273
Fnu4HI GCNGC 6 cut(s) 6, 24, 27, 30, 33, 357
FokI GGATG 1 cut(s) 360
Fsp4HI GCNGC 6 cut(s) 6, 24, 27, 30, 33, 357
GlaI GCGC 1 cut(s) 141
GluI GCNGC 6 cut(s) 6, 24, 27, 30, 33, 357
HaeII RGCGCY 1 cut(s) 143
HhaI GCGC 1 cut(s) 142
Hin1II CATG 1 cut(s) 277
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 259, 261
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 2 cut(s) 259, 261
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 153, 162
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 23, 29, 32, 159, 276
HpyF3I CTNAG 2 cut(s) 143, 194
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 1 cut(s) 277
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 2 cut(s) 175, 331
LmnI GCTCC 3 cut(s) 13, 110, 364
LpnPI CCDG 8 cut(s) 91, 130, 181, 182, 276, 295, 330, 357
Lsp1109I GCAGC 4 cut(s) 10, 13, 19, 343
LweI GCATC 1 cut(s) 26
MaeII ACGT 1 cut(s) 95
MalI GATC 2 cut(s) 177, 333
MbiI CCGCTC 1 cut(s) 218
MboI GATC 2 cut(s) 175, 331
MboII GAAGA 1 cut(s) 341
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 3 cut(s) 107, 272, 281
MluCI AATT 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 7 cut(s) 21, 66, 203, 221, 234, 372, 379
MslI CAYNNNNRTG 1 cut(s) 318
MspA1I CMGCKG 2 cut(s) 32, 356
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 6 cut(s) 14, 23, 29, 32, 159, 276
NdeII GATC 2 cut(s) 175, 331
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 1 cut(s) 271
PaeR7I CTCGAG 1 cut(s) 39
PkrI GCNGC 6 cut(s) 7, 25, 28, 31, 34, 358
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 271
PspXI VCTCGAGB 1 cut(s) 39
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 3 cut(s) 94, 260, 352
RsaNI GTAC 3 cut(s) 93, 259, 351
RseI CAYNNNNRTG 1 cut(s) 318
SatI GCNGC 6 cut(s) 6, 24, 27, 30, 33, 357
Sau3AI GATC 2 cut(s) 175, 331
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 3 cut(s) 107, 272, 281
SetI ASST 2 cut(s) 98, 195
SfaNI GCATC 1 cut(s) 26
Sfr274I CTCGAG 1 cut(s) 39
SlaI CTCGAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 1 cut(s) 157
SsiI CCGC 3 cut(s) 30, 216, 354
StyD4I CCNGG 1 cut(s) 343
TaiI ACGT 1 cut(s) 98
TaqI TCGA 3 cut(s) 40, 174, 205
TasI AATT 1 cut(s) 157
TatI WGTACW 1 cut(s) 258
TauI GCSGC 1 cut(s) 32
TseI GCWGC 5 cut(s) 5, 23, 26, 32, 356
XhoI CTCGAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.